CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM305284

Assay name estradiol induced, biological replicate 2

GSE experiment GSE12137: LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2373.5 100.0 569.9 At1g21970 838800 LEC1 (LEAFY COTYLEDON 1) Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis. O.I. C.G. H.G.
271.8 100.0 243.4 At2g34870 818052 MEE26 (maternal effect embryo arrest 26) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA O.I. C.G. H.G.
250.6 100.0 404.1 At3g63040 825479 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
246.5 100.0 594.5 At4g27150 828823 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
240.8 100.0 782.0 At4g27160 828824 AT2S3 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
237.4 100.0 972.3 At4g27170 828825 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO O.I. C.G. H.G.
237.3 100.0 1069.6 At5g44120 834435 CRA1 (CRUCIFERINA) Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
227.5 100.0 413.3 At2g34700 818035 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
213.2 100.0 501.2 At5g51210 835196 OLEO3 (OLEOSIN3) Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation. O.I. C.G. H.G.
201.7 100.0 747.0 At4g25140 828617 OLEO1 (OLEOSIN 1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
181.5 100.0 982.5 At1g03880 839383 CRU2 (CRUCIFERIN 2) Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
179.3 100.0 166.5 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
156.5 99.9 953.8 At4g28520 828970 CRU3 (CRUCIFERIN 3) Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
152.1 99.9 568.5 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
143.7 99.9 29.0 At1g65880 842900 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds. O.I. C.G. H.G.
134.6 99.9 618.1 At4g27140 828822 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO O.I. C.G. H.G.
128.3 99.9 383.2 At1g03890 839379 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO O.I. C.G. H.G.
109.9 99.9 329.0 At5g07190 830610 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function. O.I. C.G. H.G.
98.9 99.9 261.2 At4g36700 829823 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVA O.I. C.G. H.G.
94.0 99.9 462.5 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM O.I. C.G. H.G.
88.2 99.9 235.3 At1g04660 839454 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
77.5 99.9 37.5 At4g25980 828704 cationic peroxidase, putative F:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOM O.I. C.G. H.G.
77.3 99.9 87.3 At1g18100 838390 E12A11 E12A11 protein (E12A11) O.I. C.G. H.G.
74.9 99.9 131.2 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. O.I. C.G. H.G.
72.8 99.9 397.4 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. O.I. C.G. H.G.
71.3 99.9 288.2 At1g62290 842526 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPB O.I. C.G. H.G.
66.2 99.8 414.4 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
64.9 99.8 329.0 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner O.I. C.G. H.G.
55.3 99.8 125.5 At5g15530 831406 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2) biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA, O.I. C.G. H.G.
52.0 99.8 47.6 At5g09640 830823 SCPL19 encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase. O.I. C.G. H.G.
51.5 99.8 313.7 At2g28490 817397 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
49.7 99.8 368.3 At1g62500 842547 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
40.7 99.8 45.9 At5g47670 834818 NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6) F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOA O.I. C.G. H.G.
39.0 99.8 157.5 At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. O.I. C.G. H.G.
38.1 99.8 79.7 At5g07200 830611 YAP169 encodes a gibberellin 20-oxidase. O.I. C.G. H.G.
37.2 99.7 161.3 At3g05020 819664 ACP1 (acyl carrier protein 1) encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light. O.I. C.G. H.G.
35.0 99.7 51.3 At3g12203 820399 scpl17 (serine carboxypeptidase-like 17) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
33.4 99.7 23.5 At5g03800 831717 EMB175 (EMBRYO DEFECTIVE 175) Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality. O.I. C.G. H.G.
32.5 99.7 92.1 At1g65090 842817 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
31.2 99.7 52.6 At5g62800 836401 seven in absentia (SINA) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF O.I. C.G. H.G.
31.1 99.7 179.4 At1g54860 841925 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
26.9 99.7 199.7 At1g48130 841231 ATPER1 encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought. O.I. C.G. H.G.
25.6 99.7 141.8 At1g47540 841163 trypsin inhibitor, putative F:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;PO O.I. C.G. H.G.
24.6 99.6 15.9 At5g07500 830642 PEI1 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation. O.I. C.G. H.G.
23.3 99.6 24.2 At5g08360 830734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
22.8 99.6 133.7 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete O.I. C.G. H.G.
22.2 99.6 21.9 At5g22810 832344 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
21.4 99.6 238.7 At3g05500 819715 rubber elongation factor (REF) family protein F:unknown;P:biological_process unknown;C:vacuole;P O.I. C.G. H.G.
20.9 99.6 19.8 At5g66100 836742 La domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPVA O.I. C.G. H.G.
20.8 99.6 170.7 At5g50600 835129 AtHSD1 (hydroxysteroid dehydrogenase 1) F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
20.3 99.6 14.5 At3g10200 820182 dehydration-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
18.2 99.5 181.6 At2g27380 817282 ATEPR1 Encodes an extensin like gene involved in seed germination. O.I. C.G. H.G.
18.2 99.5 37.0 At5g08460 830745 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
17.1 99.5 32.3 At1g09960 837530 SUT4 (SUCROSE TRANSPORTER 4) low affinity (10mM) sucrose transporter in sieve elements (phloem) O.I. C.G. H.G.
17.0 99.5 379.1 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). O.I. C.G. H.G.
16.6 99.5 23.1 At1g22170 838822 phosphoglycerate/bisphosphoglycerate mutase family protein F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:glycolysis, metabolic process;C:chloroplast;BOMFPA O.I. C.G. H.G.
16.6 99.5 16.4 At1g78500 844186 pentacyclic triterpene synthase, putative Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin. O.I. C.G. H.G.
15.6 99.5 29.2 At2g20750 816604 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
15.5 99.5 105.4 At1g62710 842569 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. O.I. C.G. H.G.
15.4 99.5 777.5 At2g38530 818435 LTP2 (LIPID TRANSFER PROTEIN 2) Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
15.4 99.5 169.6 At5g59170 836035 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
14.7 99.4 134.7 At1g01300 839375 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFO O.I. C.G. H.G.
14.6 99.4 27.1 At3g24650 822061 ABI3 (ABA INSENSITIVE 3) Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. O.I. C.G. H.G.
13.6 99.4 119.8 At3g54940 824659 - - O.I. C.G. H.G.
13.5 99.4 154.4 At1g71695 843498 peroxidase 12 (PER12) (P12) (PRXR6) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane, plant-type cell wall;PFOB O.I. C.G. H.G.
13.1 99.4 190.9 At5g64080 836529 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;PB O.I. C.G. H.G.
12.4 99.3 22.4 At5g43770 834399 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA O.I. C.G. H.G.
11.9 99.3 52.3 At5g55480 835641 SVL1 (SHV3-LIKE 1) Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. O.I. C.G. H.G.
11.8 99.3 132.6 At3g54590 824624 ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN) Encodes a hydroxyproline-rich glycoprotein. O.I. C.G. H.G.
11.3 99.3 180.8 At1g30120 839891 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit. O.I. C.G. H.G.
11.2 99.2 62.1 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
10.9 99.2 16.3 At3g54320 824599 WRI1 (WRINKLED 1) WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. O.I. C.G. H.G.
10.6 99.2 41.0 At3g18570 821388 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P O.I. C.G. H.G.
10.5 99.2 223.5 At2g29980 817548 FAD3 (FATTY ACID DESATURASE 3) Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. O.I. C.G. H.G.
10.2 99.2 191.6 At5g54740 835563 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO O.I. C.G. H.G.
10.0 99.2 49.9 At2g47930 819405 AGP26 (ARABINOGALACTAN PROTEIN 26) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA O.I. C.G. H.G.
10.0 99.2 13.1 At5g44360 834462 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
9.6 99.1 23.7 At5g01075 831885 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:endomembrane system, beta-galactosidase complex;P O.I. C.G. H.G.
9.5 99.1 189.4 At5g46290 834671 KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA, O.I. C.G. H.G.
9.5 99.1 130.5 At5g07030 830594 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, plant-type cell wall;PMFO O.I. C.G. H.G.
9.3 99.1 76.4 At1g80530 844392 nodulin family protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;BPOFMA O.I. C.G. H.G.
9.3 99.1 16.5 At3g25160 822107 ER lumen protein retaining receptor family protein F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPF O.I. C.G. H.G.
9.3 99.1 16.2 At3g53370 824505 DNA-binding S1FA family protein F:DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
9.2 99.1 267.7 At1g01090 839429 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) pyruvate dehydrogenase E1 alpha subunit O.I. C.G. H.G.
9.0 99.1 23.5 At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. O.I. C.G. H.G.
8.9 99.0 81.0 At4g03050 828104 AOP3 Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. O.I. C.G. H.G.
8.8 99.0 151.5 At1g04560 839491 AWPM-19-like membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
8.7 99.0 102.1 At2g22660 816797 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPBOM O.I. C.G. H.G.
8.6 99.0 578.6 At3g52930 824459 fructose-bisphosphate aldolase, putative F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:in 7 components;OMBPF O.I. C.G. H.G.
8.6 99.0 196.3 At1g21750 838779 ATPDIL1-1 (PDI-LIKE 1-1) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2373.5	100.0	569.9	At1g21970	838800	LEC1 (LEAFY COTYLEDON 1)	Transcriptional activator of genes required for both embryo maturation and cellular differentiation. Sequence is similar to HAP3 subunit of the CCAAT-box binding factor. HAP3 subunit is divided into three domains: an amino-terminal A domain, a central B domain, and a carboxyl-terminal C domain. LEC1 shared high similarity with other HAP3 homologs only in central, B domain. LEC1 is required for the specification of cotyledon identity and the completion of embryo maturation. It was sufficient to induce embryogenic programs in vegetative cells, suggesting that LEC1 is a major embryonic regulator that mediates the switch between embryo and vegetative development. Mutants are desiccation intolerant, have trichomes on cotyledons and exhibit precocious meristem activation. Levels of the ABI3 and FUS3 transcripts were significantly reduced in developing siliques of the lec1-1 mutants, indicating that LEC1 down-regulates FUS3 and ABI3.When LEC1 is overexpressed from an inducible promoter, the expression of numerous genes involved in fatty acid biosynthesis is increased suggesting a role in positive regulation of FA biosynthesis.	O.I.	C.G.	H.G.
271.8	100.0	243.4	At2g34870	818052	MEE26 (maternal effect embryo arrest 26)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA	O.I.	C.G.	H.G.
250.6	100.0	404.1	At3g63040	825479	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
246.5	100.0	594.5	At4g27150	828823	2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
240.8	100.0	782.0	At4g27160	828824	AT2S3	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
237.4	100.0	972.3	At4g27170	828825	2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PO	O.I.	C.G.	H.G.
237.3	100.0	1069.6	At5g44120	834435	CRA1 (CRUCIFERINA)	Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
227.5	100.0	413.3	At2g34700	818035	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
213.2	100.0	501.2	At5g51210	835196	OLEO3 (OLEOSIN3)	Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.	O.I.	C.G.	H.G.
201.7	100.0	747.0	At4g25140	828617	OLEO1 (OLEOSIN 1)	Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
181.5	100.0	982.5	At1g03880	839383	CRU2 (CRUCIFERIN 2)	Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
179.3	100.0	166.5	At4g34520	829603	KCS18	Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
156.5	99.9	953.8	At4g28520	828970	CRU3 (CRUCIFERIN 3)	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
152.1	99.9	568.5	At3g01570	821106	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
143.7	99.9	29.0	At1g65880	842900	BZO1 (BENZOYLOXYGLUCOSINOLATE 1)	Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.	O.I.	C.G.	H.G.
134.6	99.9	618.1	At4g27140	828822	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO	O.I.	C.G.	H.G.
128.3	99.9	383.2	At1g03890	839379	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;PBMO	O.I.	C.G.	H.G.
109.9	99.9	329.0	At5g07190	830610	ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)	Gene is expressed preferentially in the embryo and encodes a unique protein of unknown function.	O.I.	C.G.	H.G.
98.9	99.9	261.2	At4g36700	829823	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVA	O.I.	C.G.	H.G.
94.0	99.9	462.5	At3g22640	821835	PAP85	F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM	O.I.	C.G.	H.G.
88.2	99.9	235.3	At1g04660	839454	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
77.5	99.9	37.5	At4g25980	828704	cationic peroxidase, putative	F:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	C.G.	H.G.
77.3	99.9	87.3	At1g18100	838390	E12A11	E12A11 protein (E12A11)	O.I.	C.G.	H.G.
74.9	99.9	131.2	At5g49190	834978	SUS2 (SUCROSE SYNTHASE 2)	Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.	O.I.	C.G.	H.G.
72.8	99.9	397.4	At3g27660	822388	OLEO4 (OLEOSIN 4)	Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.	O.I.	C.G.	H.G.
71.3	99.9	288.2	At1g62290	842526	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPB	O.I.	C.G.	H.G.
66.2	99.8	414.4	At5g40420	834040	OLEO2 (OLEOSIN 2)	Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
64.9	99.8	329.0	At1g73190	843653	TIP3	Moves to the Protein Storage Vacuole in a Golgi independent manner	O.I.	C.G.	H.G.
55.3	99.8	125.5	At5g15530	831406	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	biotin carboxyl carrier protein isoform 2 (BCCP2) mRNA,	O.I.	C.G.	H.G.
52.0	99.8	47.6	At5g09640	830823	SCPL19	encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.	O.I.	C.G.	H.G.
51.5	99.8	313.7	At2g28490	817397	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
49.7	99.8	368.3	At1g62500	842547	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
40.7	99.8	45.9	At5g47670	834818	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOA	O.I.	C.G.	H.G.
39.0	99.8	157.5	At4g26740	828781	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.	O.I.	C.G.	H.G.
38.1	99.8	79.7	At5g07200	830611	YAP169	encodes a gibberellin 20-oxidase.	O.I.	C.G.	H.G.
37.2	99.7	161.3	At3g05020	819664	ACP1 (acyl carrier protein 1)	encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light.	O.I.	C.G.	H.G.
35.0	99.7	51.3	At3g12203	820399	scpl17 (serine carboxypeptidase-like 17)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
33.4	99.7	23.5	At5g03800	831717	EMB175 (EMBRYO DEFECTIVE 175)	Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality.	O.I.	C.G.	H.G.
32.5	99.7	92.1	At1g65090	842817	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
31.2	99.7	52.6	At5g62800	836401	seven in absentia (SINA) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOF	O.I.	C.G.	H.G.
31.1	99.7	179.4	At1g54860	841925	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
26.9	99.7	199.7	At1g48130	841231	ATPER1	encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.	O.I.	C.G.	H.G.
25.6	99.7	141.8	At1g47540	841163	trypsin inhibitor, putative	F:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;PO	O.I.	C.G.	H.G.
24.6	99.6	15.9	At5g07500	830642	PEI1	Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.	O.I.	C.G.	H.G.
23.3	99.6	24.2	At5g08360	830734	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
22.8	99.6	133.7	At1g17810	838359	BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)	beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete	O.I.	C.G.	H.G.
22.2	99.6	21.9	At5g22810	832344	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
21.4	99.6	238.7	At3g05500	819715	rubber elongation factor (REF) family protein	F:unknown;P:biological_process unknown;C:vacuole;P	O.I.	C.G.	H.G.
20.9	99.6	19.8	At5g66100	836742	La domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBFPVA	O.I.	C.G.	H.G.
20.8	99.6	170.7	At5g50600	835129	AtHSD1 (hydroxysteroid dehydrogenase 1)	F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
20.3	99.6	14.5	At3g10200	820182	dehydration-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
18.2	99.5	181.6	At2g27380	817282	ATEPR1	Encodes an extensin like gene involved in seed germination.	O.I.	C.G.	H.G.
18.2	99.5	37.0	At5g08460	830745	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
17.1	99.5	32.3	At1g09960	837530	SUT4 (SUCROSE TRANSPORTER 4)	low affinity (10mM) sucrose transporter in sieve elements (phloem)	O.I.	C.G.	H.G.
17.0	99.5	379.1	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	O.I.	C.G.	H.G.
16.6	99.5	23.1	At1g22170	838822	phosphoglycerate/bisphosphoglycerate mutase family protein	F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:glycolysis, metabolic process;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
16.6	99.5	16.4	At1g78500	844186	pentacyclic triterpene synthase, putative	Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin.	O.I.	C.G.	H.G.
15.6	99.5	29.2	At2g20750	816604	ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)	member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
15.5	99.5	105.4	At1g62710	842569	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.	O.I.	C.G.	H.G.
15.4	99.5	777.5	At2g38530	818435	LTP2 (LIPID TRANSFER PROTEIN 2)	Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
15.4	99.5	169.6	At5g59170	836035	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
14.7	99.4	134.7	At1g01300	839375	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFO	O.I.	C.G.	H.G.
14.6	99.4	27.1	At3g24650	822061	ABI3 (ABA INSENSITIVE 3)	Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.	O.I.	C.G.	H.G.
13.6	99.4	119.8	At3g54940	824659	-	-	O.I.	C.G.	H.G.
13.5	99.4	154.4	At1g71695	843498	peroxidase 12 (PER12) (P12) (PRXR6)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane, plant-type cell wall;PFOB	O.I.	C.G.	H.G.
13.1	99.4	190.9	At5g64080	836529	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;PB	O.I.	C.G.	H.G.
12.4	99.3	22.4	At5g43770	834399	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA	O.I.	C.G.	H.G.
11.9	99.3	52.3	At5g55480	835641	SVL1 (SHV3-LIKE 1)	Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.	O.I.	C.G.	H.G.
11.8	99.3	132.6	At3g54590	824624	ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)	Encodes a hydroxyproline-rich glycoprotein.	O.I.	C.G.	H.G.
11.3	99.3	180.8	At1g30120	839891	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit.	O.I.	C.G.	H.G.
11.2	99.2	62.1	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
10.9	99.2	16.3	At3g54320	824599	WRI1 (WRINKLED 1)	WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.	O.I.	C.G.	H.G.
10.6	99.2	41.0	At3g18570	821388	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P	O.I.	C.G.	H.G.
10.5	99.2	223.5	At2g29980	817548	FAD3 (FATTY ACID DESATURASE 3)	Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor.	O.I.	C.G.	H.G.
10.2	99.2	191.6	At5g54740	835563	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO	O.I.	C.G.	H.G.
10.0	99.2	49.9	At2g47930	819405	AGP26 (ARABINOGALACTAN PROTEIN 26)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OPMVBFA	O.I.	C.G.	H.G.
10.0	99.2	13.1	At5g44360	834462	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
9.6	99.1	23.7	At5g01075	831885	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:endomembrane system, beta-galactosidase complex;P	O.I.	C.G.	H.G.
9.5	99.1	189.4	At5g46290	834671	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,	O.I.	C.G.	H.G.
9.5	99.1	130.5	At5g07030	830594	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:cell wall, plant-type cell wall;PMFO	O.I.	C.G.	H.G.
9.3	99.1	76.4	At1g80530	844392	nodulin family protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;BPOFMA	O.I.	C.G.	H.G.
9.3	99.1	16.5	At3g25160	822107	ER lumen protein retaining receptor family protein	F:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPF	O.I.	C.G.	H.G.
9.3	99.1	16.2	At3g53370	824505	DNA-binding S1FA family protein	F:DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
9.2	99.1	267.7	At1g01090	839429	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	pyruvate dehydrogenase E1 alpha subunit	O.I.	C.G.	H.G.
9.0	99.1	23.5	At5g57390	835845	AIL5 (AINTEGUMENTA-LIKE 5)	Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.	O.I.	C.G.	H.G.
8.9	99.0	81.0	At4g03050	828104	AOP3	Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
8.8	99.0	151.5	At1g04560	839491	AWPM-19-like membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
8.7	99.0	102.1	At2g22660	816797	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPBOM	O.I.	C.G.	H.G.
8.6	99.0	578.6	At3g52930	824459	fructose-bisphosphate aldolase, putative	F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:in 7 components;OMBPF	O.I.	C.G.	H.G.
8.6	99.0	196.3	At1g21750	838779	ATPDIL1-1 (PDI-LIKE 1-1)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.

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GSM ID	GSM305284
Assay name	estradiol induced, biological replicate 2
GSE experiment	GSE12137: LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana

Microarray experiments to specifically-expressed genes

GSM ID GSM305284 Assay name estradiol induced, biological replicate 2 GSE experiment GSE12137: LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana

GSM ID GSM305284

Assay name estradiol induced, biological replicate 2

GSE experiment GSE12137: LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana