Microarray experiments to specifically-expressed genes

GSM ID GSM299323
Assay name Wild Type Germinating Seeds With Solvent Treatment Only Set 3 of 6
GSE experiment GSE11852: Effect of uniconazole on wt and pkl mutant germinating seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
88.699.9104.3At4g21490828234NDB3F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAMO.I.C.G.H.G.
65.399.897.9At5g13870831233EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)EXGT-A4, endoxyloglucan transferase,O.I.C.G.H.G.
64.799.854.8At3g48700824031ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
61.199.838.2At2g34080817969cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
60.199.818.0At1g65340842842CYP96A3member of CYP96AO.I.C.G.H.G.
58.499.8122.7At1g33790840271jacalin lectin family proteinF:unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
56.899.878.1At2g46740819287FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMAO.I.C.G.H.G.
53.499.8131.1At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
48.799.843.4At5g67060836841HEC1 (HECATE 1)F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFAO.I.C.G.H.G.
48.299.8320.6At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
47.399.8236.4At4g12910826903scpl20 (serine carboxypeptidase-like 20)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
45.099.8128.4At5g02260831736ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
44.199.860.7At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
42.899.8254.2At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
42.799.826.5At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.O.I.C.G.H.G.
41.699.8229.4At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
40.499.8151.3At1g29090839784peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
38.799.846.0At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFO.I.C.G.H.G.
38.599.8233.7At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
35.299.7133.4At1g64970842805G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leavesO.I.C.G.H.G.
34.699.746.8At1g29080839783peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
33.199.7165.1At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.199.783.3At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVO.I.C.G.H.G.
32.999.753.2At5g59130836031subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
32.499.778.6At5g63810836501BGAL10 (beta-galactosidase 10)member of Glycoside Hydrolase Family 35O.I.C.G.H.G.
32.299.7221.7At2g42790818879CSY3 (citrate synthase 3)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.O.I.C.G.H.G.
31.499.7113.8At1g17020838272SRG1 (SENESCENCE-RELATED GENE 1)Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.O.I.C.G.H.G.
29.999.762.2At3g23800821962SBP3 (selenium-binding protein 3)F:selenium binding;P:unknown;C:cellular_component unknown;OMBPAO.I.C.G.H.G.
28.699.7196.3At5g14450831296GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOMO.I.C.G.H.G.
28.299.7254.4At3g06860819870MFP2 (MULTIFUNCTIONAL PROTEIN 2)Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.O.I.C.G.H.G.
27.899.715.5At1g01380838096ETC1 (ENHANCER OF TRY AND CPC 1)ETC1 is involved in trichome and root hair patterning in Arabidopsis.O.I.C.G.H.G.
27.199.730.6At2g26040817145Bet v I allergen family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
26.999.793.8At2g24280816963serine carboxypeptidase S28 family proteinF:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPBO.I.C.G.H.G.
26.299.7284.3At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.O.I.C.G.H.G.
26.199.7162.3At4g01700828131chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:cell wall;PBOMVFO.I.C.G.H.G.
26.199.733.7At4g16230827317carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
25.699.722.9At2g03590814888ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1)Encodes a member of a class of allantoin transporters.O.I.C.G.H.G.
24.999.67.9At1g47620841171CYP96A8member of CYP96AO.I.C.G.H.G.
24.599.671.6At5g14570831308ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.O.I.C.G.H.G.
24.399.613.3At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
23.199.623.8At5g44700834499GSO2 (GASSHO 2)Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.O.I.C.G.H.G.
22.499.6213.3At2g30970817648ASP1 (ASPARTATE AMINOTRANSFERASE 1)ASPARTATE AMINOTRANSFERASE 1O.I.C.G.H.G.
22.399.6190.6At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.C.G.H.G.
22.199.6243.1At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBO.I.C.G.H.G.
21.399.6169.6At1g73120843643unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
21.399.6162.6At2g02040814735PTR2 (PEPTIDE TRANSPORTER 2)Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.O.I.C.G.H.G.
20.899.6104.4At4g16210827314ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPAO.I.C.G.H.G.
20.799.626.3At5g27410832800aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
20.599.618.6At1g80340844374GA3OX2 (GIBBERELLIN 3-OXIDASE 2)Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.O.I.C.G.H.G.
20.499.6122.4At5g66920836826sks17 (SKU5 Similar 17)F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOAO.I.C.G.H.G.
19.799.622.3At4g38210829977ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
19.599.624.6At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFO.I.C.G.H.G.
18.999.5112.1At2g37640818341EXP3member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
18.899.542.4At3g05190819683aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
18.699.557.8At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
18.599.580.1At5g46180834660delta-OATornithine delta-aminotransferaseO.I.C.G.H.G.
18.499.544.3At2g22840816815AtGRF1 (GROWTH-REGULATING FACTOR 1)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerO.I.C.G.H.G.
18.099.5160.4At5g08260830722scpl35 (serine carboxypeptidase-like 35)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
18.099.529.2At5g45920834632carboxylesterase/ hydrolase/ hydrolase, acting on ester bondsF:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMOO.I.C.G.H.G.
17.999.527.6At5g05880830473UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
17.999.525.5At1g76500843983SOB3 (SUPPRESSOR OF PHYB-4#3)Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to lightO.I.C.G.H.G.
17.699.571.8At5g45650834605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
17.499.57.7At2g43860818990polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
17.199.524.6At1g72070843538DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAVO.I.C.G.H.G.
16.899.5112.0At5g45670834606GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
16.899.517.9At4g39500830104CYP96A11member of CYP96AO.I.C.G.H.G.
16.799.5134.7At4g30810829204scpl29 (serine carboxypeptidase-like 29)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
16.799.534.8At2g46950819309CYP709B2member of CYP709BO.I.C.G.H.G.
16.499.522.2At1g71960843527ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
16.299.5369.3At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).O.I.C.G.H.G.
16.099.530.2At3g23790821961AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAVO.I.C.G.H.G.
15.999.575.1At5g50370835104adenylate kinase, putativeF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:mitochondrion, plasma membrane, plastid;BOMFPAO.I.C.G.H.G.
15.799.5113.5At1g55020841944LOX1lipoxygenase, a defense gene conferring resistance Xanthomonas campestrisO.I.C.G.H.G.
15.799.595.4At3g5749082491640S ribosomal protein S2 (RPS2D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFPO.I.C.G.H.G.
15.599.5140.3At5g0951083081040S ribosomal protein S15 (RPS15D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane;BOPMAFO.I.C.G.H.G.
15.399.4143.4At3g61070825279PEX11Emember of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.O.I.C.G.H.G.
15.099.421.4At3g09520820109ATEXO70H4 (exocyst subunit EXO70 family protein H4)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
14.899.447.6At5g08370830735AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:positive regulation of flower development, leaf morphogenesis;C:plant-type cell wall;MBFOPO.I.C.G.H.G.
14.799.450.1At4g08290826383nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;BPOAMFO.I.C.G.H.G.
14.699.420.1At2g32560817817F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
14.599.480.5At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
14.599.417.3At5g55340835627long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFO.I.C.G.H.G.
14.499.429.8At5g57390835845AIL5 (AINTEGUMENTA-LIKE 5)Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.O.I.C.G.H.G.
14.399.4218.8At1g54000841838myrosinase-associated protein, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFMO.I.C.G.H.G.
14.099.4195.1At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
14.099.497.0At1g13080837865CYP71B2 (CYTOCHROME P450 71B2)cytochrome P450 monooxygenaseO.I.C.G.H.G.
13.899.415.4At5g44500834477small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MPFBOVAO.I.C.G.H.G.
13.799.432.9At5g24130832478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO.I.C.G.H.G.
13.599.4176.8At3g44990823634XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)xyloglucan endo-transglycosylaseO.I.C.G.H.G.
13.599.4104.7At5g56260835725dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
13.499.449.5At5g13360831177auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFO.I.C.G.H.G.
13.199.4387.3At2g05710815120aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
13.099.434.4At2g27420817287cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
12.799.3118.0At5g01040831877LAC8 (laccase 8)putative laccase, knockout mutant showed early floweringO.I.C.G.H.G.
12.799.318.4At5g24990832569unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
12.599.3105.4At3g14220820640GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuole;PBOFMO.I.C.G.H.G.
12.599.314.5At2g29760817526pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBVAO.I.C.G.H.G.
12.099.349.4At5g65410836666HB25 (HOMEOBOX PROTEIN 25)Encodes ZFHD2, a member of the zinc finger homeodomain transcriptional factor family.O.I.C.G.H.G.
12.099.325.4At4g04940825833transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.C.G.H.G.
11.999.353.6At2g17630816270phosphoserine aminotransferase, putativeF:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPAO.I.C.G.H.G.



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