Microarray experiments to specifically-expressed genes

GSM ID GSM299322
Assay name Wild Type Germinating Seeds With Solvent Treatment Only Set 2 of 6
GSE experiment GSE11852: Effect of uniconazole on wt and pkl mutant germinating seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
71.299.9102.2At5g13870831233EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)EXGT-A4, endoxyloglucan transferase,O.I.C.G.H.G.
61.199.8140.1At1g43780840974scpl44 (serine carboxypeptidase-like 44)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
54.999.850.5At3g48700824031ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVO.I.C.G.H.G.
48.299.8111.4At1g33790840271jacalin lectin family proteinF:unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
46.999.8154.0At1g64970842805G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leavesO.I.C.G.H.G.
45.199.874.4At4g21490828234NDB3F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAMO.I.C.G.H.G.
40.099.8224.8At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.O.I.C.G.H.G.
38.999.8288.3At4g36880829841CP1 (CYSTEINE PROTEINASE1)F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
38.799.8119.2At5g02260831736ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
37.299.756.6At5g59130836031subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
36.999.724.7At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.O.I.C.G.H.G.
35.699.713.8At1g65340842842CYP96A3member of CYP96AO.I.C.G.H.G.
33.899.760.3At2g46740819287FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMAO.I.C.G.H.G.
33.199.7216.8At3g45310823669cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
32.899.752.3At1g60090842304BGLU4 (BETA GLUCOSIDASE 4)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
32.799.742.3At2g34020817963calcium ion bindingF:calcium ion binding;P:biological_process unknown;C:unknown;POMBFO.I.C.G.H.G.
32.399.7195.3At4g12910826903scpl20 (serine carboxypeptidase-like 20)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
31.499.7217.6At5g05290830411ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
30.999.763.2At3g23800821962SBP3 (selenium-binding protein 3)F:selenium binding;P:unknown;C:cellular_component unknown;OMBPAO.I.C.G.H.G.
30.499.727.0At2g34080817969cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
29.899.733.9At5g67060836841HEC1 (HECATE 1)F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFAO.I.C.G.H.G.
28.599.7153.3At2g47780819390rubber elongation factor (REF) protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
28.399.773.5At5g63810836501BGAL10 (beta-galactosidase 10)member of Glycoside Hydrolase Family 35O.I.C.G.H.G.
28.199.7254.3At3g06860819870MFP2 (MULTIFUNCTIONAL PROTEIN 2)Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.O.I.C.G.H.G.
28.099.7194.0At5g14450831296GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOMO.I.C.G.H.G.
26.699.774.7At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVO.I.C.G.H.G.
25.599.7280.3At5g03860831690MLS (MALATE SYNTHASE)Encodes a protein with malate synthase activity.O.I.C.G.H.G.
24.799.6194.4At2g42790818879CSY3 (citrate synthase 3)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.O.I.C.G.H.G.
24.799.666.6At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
23.999.620.0At2g29760817526pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBVAO.I.C.G.H.G.
23.499.670.0At5g14570831308ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.O.I.C.G.H.G.
23.399.638.4At1g29080839783peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
22.999.697.2At1g17020838272SRG1 (SENESCENCE-RELATED GENE 1)Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.O.I.C.G.H.G.
22.599.6128.2At5g66920836826sks17 (SKU5 Similar 17)F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOAO.I.C.G.H.G.
21.699.619.0At1g80340844374GA3OX2 (GIBBERELLIN 3-OXIDASE 2)Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.O.I.C.G.H.G.
21.099.647.4At2g22840816815AtGRF1 (GROWTH-REGULATING FACTOR 1)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerO.I.C.G.H.G.
20.699.626.7At2g26040817145Bet v I allergen family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
20.099.6180.4At2g22780816808PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.O.I.C.G.H.G.
20.099.633.8At3g23790821961AMP-binding protein, putativeF:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAVO.I.C.G.H.G.
20.099.627.0At1g76500843983SOB3 (SUPPRESSOR OF PHYB-4#3)Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to lightO.I.C.G.H.G.
19.399.675.0At5g45650834605subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
19.399.643.0At3g05190819683aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
18.999.5164.3At5g08260830722scpl35 (serine carboxypeptidase-like 35)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
18.699.5142.2At4g30810829204scpl29 (serine carboxypeptidase-like 29)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.C.G.H.G.
18.699.5102.6At1g29090839784peptidase C1A papain family proteinF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
18.599.529.7At5g45920834632carboxylesterase/ hydrolase/ hydrolase, acting on ester bondsF:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMOO.I.C.G.H.G.
18.499.521.2At5g44700834499GSO2 (GASSHO 2)Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.O.I.C.G.H.G.
18.399.517.7At5g44500834477small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MPFBOVAO.I.C.G.H.G.
17.899.518.8At4g37580829913HLS1 (HOOKLESS 1)involved in apical hook development. putative N-acetyltransferaseO.I.C.G.H.G.
17.699.5216.8At5g42890834300SCP2 (STEROL CARRIER PROTEIN 2)F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPBO.I.C.G.H.G.
17.499.512.6At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionO.I.C.G.H.G.
17.299.5146.1At2g02040814735PTR2 (PEPTIDE TRANSPORTER 2)Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.O.I.C.G.H.G.
17.299.5113.4At5g45670834606GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
16.999.5377.6At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).O.I.C.G.H.G.
16.999.574.2At2g24280816963serine carboxypeptidase S28 family proteinF:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPBO.I.C.G.H.G.
16.899.511.1At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVO.I.C.G.H.G.
16.699.523.5At5g27410832800aminotransferase class IV family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFMO.I.C.G.H.G.
16.499.520.4At4g38210829977ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
16.199.5181.1At2g30970817648ASP1 (ASPARTATE AMINOTRANSFERASE 1)ASPARTATE AMINOTRANSFERASE 1O.I.C.G.H.G.
15.899.526.2At4g16230827317carboxylesterase/ hydrolase, acting on ester bondsF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
14.799.417.4At2g03590814888ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1)Encodes a member of a class of allantoin transporters.O.I.C.G.H.G.
14.599.429.9At5g57390835845AIL5 (AINTEGUMENTA-LIKE 5)Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.O.I.C.G.H.G.
14.299.491.0At3g5749082491640S ribosomal protein S2 (RPS2D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, intracellular, membrane;BOMAFPO.I.C.G.H.G.
14.199.4133.8At5g0951083081040S ribosomal protein S15 (RPS15D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane;BOPMAFO.I.C.G.H.G.
13.899.47.1At2g16230816120catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
13.699.432.8At5g24130832478unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO.I.C.G.H.G.
13.199.474.0At1g78060844141glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:apoplast, cell wall, chloroplast, plant-type cell wall;BOFPAMO.I.C.G.H.G.
12.999.335.8At4g27640828875importin beta-2 subunit family proteinF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFOPBO.I.C.G.H.G.
12.899.323.3At5g05880830473UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
12.899.320.0At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFO.I.C.G.H.G.
12.799.3205.0At4g25630828668FIB2 (FIBRILLARIN 2)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.O.I.C.G.H.G.
12.699.330.2At1g16390838209ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOAO.I.C.G.H.G.
12.599.397.2At5g07350830626tudor domain-containing protein / nuclease family proteinF:hydrolase activity, acting on ester bonds, protein binding, nuclease activity, nucleic acid binding;P:response to cadmium ion;C:cell wall, plasma membrane, chloroplast;MOFPBAO.I.C.G.H.G.
12.599.320.8At2g36080818181DNA-binding protein, putativeEncodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.O.I.C.G.H.G.
12.399.344.9At1g26740839215structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:large ribosomal subunit;PBFOO.I.C.G.H.G.
12.299.329.9At5g20980832223ATMS3 (methionine synthase 3)encodes a plastidic methionine synthase, involved in methionine de novo synthesis in the chloroplastO.I.C.G.H.G.
12.199.332.8At5g60300836152lectin protein kinase family proteinLectin Receptor Kinase involved in protein-protein interactions with RGD-containing proteins as potential ligands. Role in cell wall-plasma membrane adhesion.O.I.C.G.H.G.
12.099.315.2At4g39500830104CYP96A11member of CYP96AO.I.C.G.H.G.
11.999.3184.1At5g20950832220glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAMO.I.C.G.H.G.
11.999.3126.5At3g61070825279PEX11Emember of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.O.I.C.G.H.G.
11.999.386.4At1g80530844392nodulin family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;BPOFMAO.I.C.G.H.G.
11.899.370.4At4g20440827792smB (small nuclear ribonucleoprotein associated protein B)F:unknown;P:nuclear mRNA splicing, via spliceosome;C:nucleoplasm, small nucleolar ribonucleoprotein complex, nucleus, Cajal body;MPBFOVAO.I.C.G.H.G.
11.899.316.1At5g14580831309polyribonucleotide nucleotidyltransferase, putativeF:polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding;P:mRNA catabolic process, RNA processing;C:unknown;BOMPAFO.I.C.G.H.G.
11.699.3125.2At1g73120843643unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:unknown;PO.I.C.G.H.G.
11.699.3119.6At1g01300839375aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFOO.I.C.G.H.G.
11.499.318.5At1g71960843527ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
11.399.3359.2At2g05710815120aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putativeProtein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.O.I.C.G.H.G.
11.399.318.6At3g09520820109ATEXO70H4 (exocyst subunit EXO70 family protein H4)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
11.399.317.7At2g32560817817F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
11.299.2150.0At1g06290837140ACX3 (ACYL-COA OXIDASE 3)Encodes an acyl-CoA oxidase with specificity for medium chain fatty acids.O.I.C.G.H.G.
11.299.2119.2At1g49600841384ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)F:RNA binding;P:unknown;C:unknown;MOPFBVAO.I.C.G.H.G.
11.299.214.5At1g55740842023AtSIP1 (Arabidopsis thaliana seed imbibition 1)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOO.I.C.G.H.G.
11.199.2174.0At4g32460829381-F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
11.199.290.1At1g63660842670GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putativeF:catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding;P:in 6 processes;C:unknown;OBAFMPO.I.C.G.H.G.
11.199.262.6At5g50370835104adenylate kinase, putativeF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:mitochondrion, plasma membrane, plastid;BOMFPAO.I.C.G.H.G.
11.199.248.7At5g42960834310unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;PO.I.C.G.H.G.
11.199.236.9At2g24050816939MIF4G domain-containing protein / MA3 domain-containing proteinF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:unknown;MPOFBVO.I.C.G.H.G.
11.199.224.4At4g04940825833transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.C.G.H.G.
11.099.216.4At4g15230827187PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPVO.I.C.G.H.G.
11.099.215.6At3g14450820668CID9 (CTC-Interacting Domain 9)RNA-binding protein, putative, contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies). Contains PAM PABC binding domain.O.I.C.G.H.G.



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