Microarray experiments to specifically-expressed genes

GSM ID GSM297392
Assay name At.StarchSD.WTSS3.WTR1L1
GSE experiment GSE11708: Global gene expression in Atss3 mutant and WT over short day diurnal cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
92.299.927.0At5g11590831031TINY2 (TINY2)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
87.099.966.7At2g15020815991unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
77.599.9169.3At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.O.I.C.G.H.G.
74.999.982.5At2g27420817287cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
68.399.927.4At3g24460822036TMS membrane family protein / tumour differentially expressed (TDE) family proteinF:unknown;P:unknown;C:membrane;MFPOO.I.C.G.H.G.
63.099.8232.8At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
60.299.883.9At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
56.799.8308.5At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
56.299.899.4At2g36630818235unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPAO.I.C.G.H.G.
56.199.8119.4At5g58770835991dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMPO.I.C.G.H.G.
54.099.834.3At1g65870842898disease resistance-responsive family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;PO.I.C.G.H.G.
50.899.8287.3At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMO.I.C.G.H.G.
49.799.8208.5At5g15950831452adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
46.399.8226.4At5g24150832480SQP1squalene monooxygenase gene homologO.I.C.G.H.G.
45.999.880.1At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFO.I.C.G.H.G.
45.699.861.8At3g21890821744zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;POO.I.C.G.H.G.
38.299.8329.9At2g38210818400PDX1L4 (PUTATIVE PDX1-LIKE PROTEIN 4)F:unknown;P:response to ethylene stimulus, response to stress;C:plasma membrane;BOAFPMO.I.C.G.H.G.
36.399.796.6At1g17050838275SPS2 (Solanesyl diphosphate synthase 2)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
35.399.7144.1At1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.O.I.C.G.H.G.
33.999.761.0At5g42760834285-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMFO.I.C.G.H.G.
32.799.7418.0At4g26850828792VTC2 (vitamin c defective 2)Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.O.I.C.G.H.G.
31.599.729.2At4g26150828721CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOMO.I.C.G.H.G.
29.799.752.7At1g76570843990chlorophyll A-B binding family proteinF:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POMO.I.C.G.H.G.
27.699.781.6At1g20070838596unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
27.499.7119.5At3g48460824005GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
26.199.7307.9At3g17800821048-mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stemO.I.C.G.H.G.
25.799.7171.6At4g37760829932SQE3 (squalene epoxidase 3)F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPAO.I.C.G.H.G.
25.599.7279.0At1g62180842514APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2)encodes a adenosine 5'-phosphosulfate reductase, involved in sulfate assimilation. Is a major effect locus for natural variation of shoot sulfate content in Arabidopsis.O.I.C.G.H.G.
25.499.625.0At1g51440841569lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMVO.I.C.G.H.G.
25.199.622.7At5g17600831626zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
24.399.672.6At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
23.899.6110.1At5g17050831568UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)The At5g17050 encodes a anthocyanidin 3-O-glucosyltransferase which specifically glucosylates the 3-position of the flavonoid C-ring. Anthocyanidins such as cyanidin and pelargonidin as well as flavonols such as kaempferol and quercetin are accepted substrates.O.I.C.G.H.G.
23.599.6155.9At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOO.I.C.G.H.G.
23.299.670.3At2g24540816990AFR (ATTENUATED FAR-RED RESPONSE)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
23.199.699.7At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.999.6217.2At3g21670821721nitrate transporter (NTP3)F:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
21.399.656.2At5g23730832438nucleotide bindingF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPAO.I.C.G.H.G.
21.199.693.9At5g53970835480aminotransferase, putativeencodes tyrosine aminotransferase which is strongly induced upon aging and coronatine treatmentO.I.C.G.H.G.
21.199.656.7At4g27030828811small conjugating protein ligaseF:small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:chloroplast;MOPBVO.I.C.G.H.G.
20.699.6118.1At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
20.399.612.8At1g01520839337myb family transcription factorF:transcription factor activity, DNA binding;P:response to salt stress, regulation of transcription, DNA-dependent;C:unknown;POMO.I.C.G.H.G.
19.999.691.8At3g11670820339DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).O.I.C.G.H.G.
19.899.67.9At4g26950828802unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.399.683.1At4g16490827347bindingF:binding;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
18.999.5215.6At5g43850834407ARD4F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFOO.I.C.G.H.G.
18.499.5113.1At1g66330842950senescence-associated family proteinF:unknown;P:senescence;C:unknown;PBO.I.C.G.H.G.
18.299.565.2At4g00050828175UNE10 (unfertilized embryo sac 10)F:transcription factor activity, DNA binding;P:double fertilization forming a zygote and endosperm, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
18.199.531.7At1g73870843723zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
18.099.554.4At2g21320816671zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:endomembrane system, intracellular;POMO.I.C.G.H.G.
17.899.543.3At2g41040818703methyltransferase-relatedF:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFMO.I.C.G.H.G.
17.699.5182.3At1g01060839341LHY (LATE ELONGATED HYPOCOTYL)LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1O.I.C.G.H.G.
17.499.560.7At2g01290814657ribose-5-phosphate isomeraseF:ribose-5-phosphate isomerase activity;P:glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch;C:cytoplasm;BOAFMPO.I.C.G.H.G.
17.399.5196.1At5g35970833589DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPAO.I.C.G.H.G.
17.399.5152.5At5g55620835656unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.399.576.2At4g38810830036calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.299.5119.5At5g67370836872unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OBPO.I.C.G.H.G.
17.199.552.4At5g21100832234L-ascorbate oxidase, putativeF:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOAO.I.C.G.H.G.
16.699.539.7At5g19850832105hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPFAO.I.C.G.H.G.
16.099.542.3At1g66130842927oxidoreductase N-terminal domain-containing proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOFMAPO.I.C.G.H.G.
15.799.567.2At1g55910842041ZIP11 (ZINC TRANSPORTER 11 PRECURSOR)member of Putative zinc transporter ZIP2 - like familyO.I.C.G.H.G.
15.699.524.2At1g05170839292galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.C.G.H.G.
15.599.536.0At5g50100835074-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPMO.I.C.G.H.G.
15.199.452.9At1g73390843674-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFMO.I.C.G.H.G.
15.199.449.1At4g31870829316ATGPX7 (glutathione peroxidase 7)Encodes glutathione peroxidase.O.I.C.G.H.G.
15.099.499.2At2g20570816579GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.O.I.C.G.H.G.
14.999.417.0At4g13800827014permease-relatedF:unknown;P:biological_process unknown;C:plasma membrane;MFPOBO.I.C.G.H.G.
14.899.4122.0At4g25700828675BETA-OHASE 1 (BETA-HYDROXYLASE 1)Converts beta-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
14.899.427.4At5g22390832300unknown proteinF:unknown;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
14.799.410.9At3g16175820863thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;PMBFOO.I.C.G.H.G.
14.599.428.5At2g19650816484DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:unknown;POMO.I.C.G.H.G.
14.599.417.9At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
14.399.420.5At4g09900826580MES12 (METHYL ESTERASE 12)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
14.299.4105.1At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.C.G.H.G.
14.199.4150.5At1g22850838890-F:unknown;P:biological_process unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
14.199.473.8At3g14770820705nodulin MtN3 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
14.099.468.2At1g07010837211calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAVO.I.C.G.H.G.
14.099.420.7At5g56860835788GNC (GATA, nitrate-inducible, carbon metabolism-involved)F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMBO.I.C.G.H.G.
13.999.489.0At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
13.899.438.4At4g12000826807-F:unknown;P:response to oxidative stress;C:unknown;BOPMFAO.I.C.G.H.G.
13.899.414.6At5g41900834195hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
13.599.442.0At2g21650816703MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)F:transcription factor activity, DNA binding;P:embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent;C:unknown;PMOO.I.C.G.H.G.
13.399.454.8At4g37310829886CYP81H1member of CYP81HO.I.C.G.H.G.
13.299.4231.2At1g66100842924thionin, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.O.I.C.G.H.G.
13.299.475.6At1g07250837236UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
13.299.464.4At3g47430823897PEX11Bmember of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.O.I.C.G.H.G.
13.299.416.8At5g01260831794glycoside hydrolase starch-binding domain-containing proteinF:carbohydrate binding, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPFOMO.I.C.G.H.G.
13.199.498.0At2g22240816757MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
13.199.433.0At5g62140836334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
13.099.423.4At2g38640818446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
12.999.3143.4At1g58290842198HEMA1Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis.O.I.C.G.H.G.
12.799.3211.5At1g50250841447FTSH1 (FtsH protease 1)encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.O.I.C.G.H.G.
12.599.321.9At1g19700838558BEL10 (BEL1-LIKE HOMEODOMAIN 10)Encodes a member of the BEL family of homeodomain proteins. Its interaction with PLP (PAS/LOV PROTEIN) is diminished by blue light.O.I.C.G.H.G.
12.499.336.2At3g45210823657unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.499.330.1At1g53090841743SPA4 (SPA1-RELATED 4)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.O.I.C.G.H.G.
12.399.334.8At1g32520840146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOO.I.C.G.H.G.
12.399.324.8At1g18810838463phytochrome kinase substrate-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
12.199.3247.0At5g67030836838ABA1 (ABA DEFICIENT 1)Encodes a single copy zeaxanthin epoxidase gene that functions in first step of the biosynthesis of the abiotic stress hormone abscisic acid (ABA). Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.O.I.C.G.H.G.
12.199.3123.7At4g11570826761haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
12.199.358.8At5g64170836538dentin sialophosphoprotein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMAO.I.C.G.H.G.
12.199.346.6At1g71480843489nuclear transport factor 2 (NTF2) family proteinF:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBOO.I.C.G.H.G.



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