CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM297386

Assay name At.StarchSD.WTSS3.SS3R2D8

GSE experiment GSE11708: Global gene expression in Atss3 mutant and WT over short day diurnal cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
57.8 99.8 119.3 At3g30720 822807 QQS (QUA-QUINE STARCH) F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;P O.I. C.G. H.G.
42.4 99.8 144.9 At1g30250 839905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
40.4 99.8 135.5 At1g30260 839906 - F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P O.I. C.G. H.G.
34.5 99.7 47.1 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.
20.5 99.6 61.7 At5g64280 836549 DiT2.2 (dicarboxylate transporter 2.2) F:oxoglutarate:malate antiporter activity;P:malate transport, sodium ion transport;C:chloroplast, membrane;BOPAFMV O.I. C.G. H.G.
18.9 99.5 100.1 At5g37260 833700 RVE2 (REVEILLE 2) Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. O.I. C.G. H.G.
14.8 99.4 91.0 At1g55000 841942 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB O.I. C.G. H.G.
13.6 99.4 316.4 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
11.5 99.3 118.7 At1g68520 843181 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF O.I. C.G. H.G.
11.5 99.3 17.9 At2g03710 814898 SEP4 (SEPALLATA 4) This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. O.I. C.G. H.G.
11.3 99.3 31.6 At3g15780 820821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
11.1 99.2 196.2 At3g48360 823994 BT2 (BTB AND TAZ DOMAIN PROTEIN 2) encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development. O.I. C.G. H.G.
11.0 99.2 52.6 At5g01920 831741 STN8 Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2. O.I. C.G. H.G.
10.8 99.2 80.1 At1g07440 837256 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
10.4 99.2 37.2 At3g07870 819978 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.0 99.2 75.8 At1g74880 843827 NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O) Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. O.I. C.G. H.G.
10.0 99.2 43.7 At2g03550 814884 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV O.I. C.G. H.G.
9.2 99.1 35.9 At1g53870 841824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.1 99.1 86.2 At5g53160 835397 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
8.7 99.0 81.5 At2g41560 818754 ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4) encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole. O.I. C.G. H.G.
8.6 99.0 91.0 At1g19350 838518 BES1 (BRI1-EMS-SUPPRESSOR 1) Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
57.8	99.8	119.3	At3g30720	822807	QQS (QUA-QUINE STARCH)	F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;P	O.I.	C.G.	H.G.
42.4	99.8	144.9	At1g30250	839905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
40.4	99.8	135.5	At1g30260	839906	-	F:molecular_function unknown;P:response to cytokinin stimulus;C:unknown;P	O.I.	C.G.	H.G.
34.5	99.7	47.1	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.
20.5	99.6	61.7	At5g64280	836549	DiT2.2 (dicarboxylate transporter 2.2)	F:oxoglutarate:malate antiporter activity;P:malate transport, sodium ion transport;C:chloroplast, membrane;BOPAFMV	O.I.	C.G.	H.G.
18.9	99.5	100.1	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	O.I.	C.G.	H.G.
14.8	99.4	91.0	At1g55000	841942	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;MPOB	O.I.	C.G.	H.G.
13.6	99.4	316.4	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
11.5	99.3	118.7	At1g68520	843181	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMF	O.I.	C.G.	H.G.
11.5	99.3	17.9	At2g03710	814898	SEP4 (SEPALLATA 4)	This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.	O.I.	C.G.	H.G.
11.3	99.3	31.6	At3g15780	820821	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
11.1	99.2	196.2	At3g48360	823994	BT2 (BTB AND TAZ DOMAIN PROTEIN 2)	encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway. Acts redundantly with BT3 and BT1 during female gametophyte development and with BT3 during male gametophyte development.	O.I.	C.G.	H.G.
11.0	99.2	52.6	At5g01920	831741	STN8	Chloroplast thylakoid protein kinase STN8 is specific in phosphorylation of N-terminal threonine residues in D1, D2 and CP43 proteins, and Thr-4 in PsbH protein of photosystem II. Phosphorylation of Thr-4 in the wild type required both light and prior phosphorylation at Thr-2.	O.I.	C.G.	H.G.
10.8	99.2	80.1	At1g07440	837256	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
10.4	99.2	37.2	At3g07870	819978	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.0	99.2	75.8	At1g74880	843827	NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)	Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.	O.I.	C.G.	H.G.
10.0	99.2	43.7	At2g03550	814884	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV	O.I.	C.G.	H.G.
9.2	99.1	35.9	At1g53870	841824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.1	99.1	86.2	At5g53160	835397	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
8.7	99.0	81.5	At2g41560	818754	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.	O.I.	C.G.	H.G.
8.6	99.0	91.0	At1g19350	838518	BES1 (BRI1-EMS-SUPPRESSOR 1)	Encodes brassinosteroid (BR) signalling protein that accumulates in the nucleus as dephosphorylated form in response to BRs. Is phosphorylated by the BIN2 GSK3 kinase. It synergistically interacts with BIM1 to bind to E box sequences (CANNTG). The protein contains a nuclear localization signal (NLS), followed by a highly conserved amino-terminal domain (N) shared by all family members, a BIN2 phosphorylation domain (P), a PEST motif, involved in protein degradation in the absence of BR, and a carboxyl-terminal domain. BES1 can interact with the ELF6 and REF6 Jumonji N/C-domain containing proteins and may direct them to modify histone methylation upstream of some brassinosteroid responsive-genes	O.I.	C.G.	H.G.

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GSM ID	GSM297386
Assay name	At.StarchSD.WTSS3.SS3R2D8
GSE experiment	GSE11708: Global gene expression in Atss3 mutant and WT over short day diurnal cycle

Microarray experiments to specifically-expressed genes

GSM ID GSM297386 Assay name At.StarchSD.WTSS3.SS3R2D8 GSE experiment GSE11708: Global gene expression in Atss3 mutant and WT over short day diurnal cycle

GSM ID GSM297386

Assay name At.StarchSD.WTSS3.SS3R2D8

GSE experiment GSE11708: Global gene expression in Atss3 mutant and WT over short day diurnal cycle