Microarray experiments to specifically-expressed genes

GSM ID GSM291128
Assay name root - 08% oxygen - 48h - B
GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
143.899.9340.7At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
132.699.9122.8At3g46130823756MYB111 (MYB DOMAIN PROTEIN 111)Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.O.I.C.G.H.G.
118.499.9626.1At1g32450840139NRT1.5 (NITRATE TRANSPORTER 1.5)Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.O.I.C.G.H.G.
79.799.9505.6At5g63600836480FLS5 (FLAVONOL SYNTHASE 5)encodes a protein whose sequence is similar to flavonol synthaseO.I.C.G.H.G.
66.999.8191.1At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.O.I.C.G.H.G.
53.999.8232.1At5g59780836099MYB59 (MYB DOMAIN PROTEIN 59)Encodes a putative transcription factor (MYB59).O.I.C.G.H.G.
53.399.8312.6At4g39675830122unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
40.899.8306.4At1g19530838540unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
36.099.778.6At2g15490816041UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOFO.I.C.G.H.G.
33.899.7374.2At1g60740842368peroxiredoxin type 2, putativeF:oxidoreductase activity, antioxidant activity;P:cell redox homeostasis;C:plasma membrane;OBFPMAO.I.C.G.H.G.
32.899.720.3At1g607503767587oxidoreductaseF:oxidoreductase activity;P:oxidation reduction;C:unknownO.I.C.G.H.G.
31.599.789.2At1g20160838606ATSBT5.2F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMAO.I.C.G.H.G.
29.199.7154.6At5g10580830923unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOO.I.C.G.H.G.
28.299.7212.8At1g78340844169ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
27.399.747.3At1g28100839703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFOO.I.C.G.H.G.
26.799.7206.4At1g15380838107lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFAO.I.C.G.H.G.
26.799.7115.0At1g30720839952FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
26.599.741.7At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVO.I.C.G.H.G.
26.399.722.1At4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.O.I.C.G.H.G.
25.999.7368.4At2g01530814682MLP329 (MLP-LIKE PROTEIN 329)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
24.699.642.2At4g37010829855caltractin, putative / centrin, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MFPOBO.I.C.G.H.G.
23.899.6391.6At1g66270842944BGLU21F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFAO.I.C.G.H.G.
23.199.6221.9At2g43535818955trypsin inhibitor, putativeEncodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
22.599.6206.3At5g03240831899UBQ3 (POLYUBIQUITIN 3)encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.O.I.C.G.H.G.
21.899.644.1At3g14680820696CYP72A14putative cytochrome P450O.I.C.G.H.G.
21.599.6235.5At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
21.499.647.8At3g01260821171aldose 1-epimerase/ carbohydrate binding / catalytic/ isomeraseF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAO.I.C.G.H.G.
20.599.668.4At3g26470822252-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.499.6803.0At1g07610837274MT1Cone of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance.O.I.C.G.H.G.
20.099.6139.1At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
19.899.643.9At2g23030816833SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)encodes a member of SNF1-related protein kinases (SnRK2)O.I.C.G.H.G.
19.699.6294.9At4g19880827734-F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMAO.I.C.G.H.G.
19.399.658.8At5g43520834372DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFO.I.C.G.H.G.
19.299.6497.8At3g149908207284-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putativeF:catalytic activity;P:response to cadmium ion, thiamin biosynthetic process;C:plasma membrane, vacuole;BMOAPFO.I.C.G.H.G.
19.199.630.7At4g18510827583CLE2 (CLAVATA3/ESR-RELATED)CLE2, putative ligand, member of large gene family homologous to Clavata3O.I.C.G.H.G.
18.999.578.4At4g23700828470ATCHX17 (CATION/H+ EXCHANGER 17)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
18.999.577.0At2g19110816428HMA4Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport.O.I.C.G.H.G.
18.099.5125.0At1g30400839920MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1)glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.O.I.C.G.H.G.
17.899.5145.7At4g30450829168glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVAO.I.C.G.H.G.
17.399.5207.1At5g43780834400APS4sulfate adenylyltransferase, ATP sulfurylaseO.I.C.G.H.G.
17.299.5137.9At3g53480824516PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
16.999.54.7At5g03310831879auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
16.899.5537.1At3g16460820894jacalin lectin family proteinF:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVAO.I.C.G.H.G.
16.799.533.4At5g10210830885-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.599.5132.7At3g28740822506CYP81D1Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.O.I.C.G.H.G.
16.599.532.0At2g16990816202tetracycline transporterF:tetracycline transporter activity;P:unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
16.399.53.9At2g068903768157transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
16.199.5117.4At3g10500820214anac053 (Arabidopsis NAC domain containing protein 53)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOFO.I.C.G.H.G.
15.899.5169.2At4g11310826733cysteine proteinase, putativecysteine proteinase precursor-like proteinO.I.C.G.H.G.
15.899.541.3At2g46740819287FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMAO.I.C.G.H.G.
15.899.520.2At1g67110843031CYP735A2member of CYP709AO.I.C.G.H.G.
15.799.563.5At3g06390819813integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.699.5414.2At1g73260843660trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;POO.I.C.G.H.G.
15.399.498.8At1g120108377531-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeencodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidaseO.I.C.G.H.G.
15.399.430.3At2g29330817482TRI (tropinone reductase)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
15.299.461.2At1g78290844164--O.I.C.G.H.G.
15.299.445.2At2g17440816250leucine-rich repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MPBOFVAO.I.C.G.H.G.
14.999.414.1At3g60490825220AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
14.899.454.5At2g29490817498ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
14.899.435.1At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
14.799.4804.0At3g09260820082PYK10Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.O.I.C.G.H.G.
14.499.4508.1At1g73330843668ATDR4encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.O.I.C.G.H.G.
14.499.4120.2At4g38540830011monooxygenase, putative (MO2)F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAMO.I.C.G.H.G.
14.499.432.8At1g30760839958FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
14.399.496.8At5g13750831220ZIFL1 (ZINC INDUCED FACILITATOR-like 1)F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAPO.I.C.G.H.G.
14.399.421.7At4g23410828440TET5 (TETRASPANIN5)Member of TETRASPANIN familyO.I.C.G.H.G.
14.099.492.3At5g65210836646TGA1F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POMO.I.C.G.H.G.
14.099.442.2At3g21260821680glycolipid transfer protein-relatedF:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MFPOO.I.C.G.H.G.
13.899.417.1At3g24310822019MYB305 (myb domain protein 305)snapdragon myb protein 305 homolog (myb)O.I.C.G.H.G.
13.699.4178.9At2g38800818462calmodulin-binding protein-relatedF:calmodulin binding;P:unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
13.599.4155.7At2g37750818352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
13.499.416.2At5g52790835356CBS domain-containing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAO.I.C.G.H.G.
13.399.4190.9At5g44380834464FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAMO.I.C.G.H.G.
13.399.455.2At5g47720834823acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putativeF:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
13.299.4141.2At1g55850842035ATCSLE1encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
13.299.46.0At1g61750842472-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.899.382.8At5g20960832221AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)Encodes aldehyde oxidase AA01.O.I.C.G.H.G.
12.799.3610.9At2g33830817950dormancy/auxin associated family proteinF:unknown;P:unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.799.3140.3At2g29420817491ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.O.I.C.G.H.G.
12.799.333.7At3g19660821503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.699.37.3At2g37820818359DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
12.599.3105.7At1g18880838469proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBFOO.I.C.G.H.G.
12.499.3283.6At5g01870831705lipid transfer protein, putativePredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
12.499.340.3At4g37060829860PLP5 (PATATIN-LIKE PROTEIN 5)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
12.499.318.1At5g06800830570myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POFMO.I.C.G.H.G.
12.399.3157.7At4g34131829559UGT73B3 (UDP-glucosyl transferase 73B3)F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOFO.I.C.G.H.G.
12.399.334.9At2g26650817206AKT1 (ARABIDOPSIS K TRANSPORTER 1)Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis.O.I.C.G.H.G.
12.299.3281.4At1g76680844001OPR1Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.O.I.C.G.H.G.
12.299.363.7At1g60140842309ATTPS10 (trehalose phosphate synthase)Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
12.299.327.0At2g25590817098agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.199.356.7At1g80050844345APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.O.I.C.G.H.G.
12.199.338.2At5g47050834751protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBAO.I.C.G.H.G.
12.099.364.0At2g44010819006unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
11.999.396.1At5g44790834509RAN1 (RESPONSIVE-TO-ANTAGONIST 1)ATP dependent copper transporter vital for ethylene response pathwayO.I.C.G.H.G.
11.899.3203.4At3g01420821135DOX1Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.O.I.C.G.H.G.
11.799.3142.9At1g80830844422NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.O.I.C.G.H.G.
11.799.356.7At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
11.799.319.4At1g50560841477CYP705A25member of CYP705AO.I.C.G.H.G.
11.799.319.0At5g595308360722-oxoglutarate-dependent dioxygenase, putativeF:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFMO.I.C.G.H.G.
11.699.334.2At1g26440839185ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthineO.I.C.G.H.G.



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