CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM291128

Assay name root - 08% oxygen - 48h - B

GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
143.8 99.9 340.7 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
132.6 99.9 122.8 At3g46130 823756 MYB111 (MYB DOMAIN PROTEIN 111) Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons. O.I. C.G. H.G.
118.4 99.9 626.1 At1g32450 840139 NRT1.5 (NITRATE TRANSPORTER 1.5) Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. O.I. C.G. H.G.
79.7 99.9 505.6 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
66.9 99.8 191.1 At3g23430 821924 PHO1 (phosphate 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. O.I. C.G. H.G.
53.9 99.8 232.1 At5g59780 836099 MYB59 (MYB DOMAIN PROTEIN 59) Encodes a putative transcription factor (MYB59). O.I. C.G. H.G.
53.3 99.8 312.6 At4g39675 830122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.8 99.8 306.4 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
36.0 99.7 78.6 At2g15490 816041 UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF O.I. C.G. H.G.
33.8 99.7 374.2 At1g60740 842368 peroxiredoxin type 2, putative F:oxidoreductase activity, antioxidant activity;P:cell redox homeostasis;C:plasma membrane;OBFPMA O.I. C.G. H.G.
32.8 99.7 20.3 At1g60750 3767587 oxidoreductase F:oxidoreductase activity;P:oxidation reduction;C:unknown O.I. C.G. H.G.
31.5 99.7 89.2 At1g20160 838606 ATSBT5.2 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA O.I. C.G. H.G.
29.1 99.7 154.6 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO O.I. C.G. H.G.
28.2 99.7 212.8 At1g78340 844169 ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
27.3 99.7 47.3 At1g28100 839703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO O.I. C.G. H.G.
26.7 99.7 206.4 At1g15380 838107 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA O.I. C.G. H.G.
26.7 99.7 115.0 At1g30720 839952 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
26.5 99.7 41.7 At2g45920 819200 U-box domain-containing protein F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV O.I. C.G. H.G.
26.3 99.7 22.1 At4g11880 826795 AGL14 (agamous-like 14) AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots. O.I. C.G. H.G.
25.9 99.7 368.4 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
24.6 99.6 42.2 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
23.8 99.6 391.6 At1g66270 842944 BGLU21 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA O.I. C.G. H.G.
23.1 99.6 221.9 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
22.5 99.6 206.3 At5g03240 831899 UBQ3 (POLYUBIQUITIN 3) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments. O.I. C.G. H.G.
21.8 99.6 44.1 At3g14680 820696 CYP72A14 putative cytochrome P450 O.I. C.G. H.G.
21.5 99.6 235.5 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM O.I. C.G. H.G.
21.4 99.6 47.8 At3g01260 821171 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
20.5 99.6 68.4 At3g26470 822252 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.4 99.6 803.0 At1g07610 837274 MT1C one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. O.I. C.G. H.G.
20.0 99.6 139.1 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
19.8 99.6 43.9 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) O.I. C.G. H.G.
19.6 99.6 294.9 At4g19880 827734 - F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA O.I. C.G. H.G.
19.3 99.6 58.8 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
19.2 99.6 497.8 At3g14990 820728 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative F:catalytic activity;P:response to cadmium ion, thiamin biosynthetic process;C:plasma membrane, vacuole;BMOAPF O.I. C.G. H.G.
19.1 99.6 30.7 At4g18510 827583 CLE2 (CLAVATA3/ESR-RELATED) CLE2, putative ligand, member of large gene family homologous to Clavata3 O.I. C.G. H.G.
18.9 99.5 78.4 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
18.9 99.5 77.0 At2g19110 816428 HMA4 Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport. O.I. C.G. H.G.
18.0 99.5 125.0 At1g30400 839920 MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1) glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. O.I. C.G. H.G.
17.8 99.5 145.7 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA O.I. C.G. H.G.
17.3 99.5 207.1 At5g43780 834400 APS4 sulfate adenylyltransferase, ATP sulfurylase O.I. C.G. H.G.
17.2 99.5 137.9 At3g53480 824516 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
16.9 99.5 4.7 At5g03310 831879 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
16.8 99.5 537.1 At3g16460 820894 jacalin lectin family protein F:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVA O.I. C.G. H.G.
16.7 99.5 33.4 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.5 99.5 132.7 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
16.5 99.5 32.0 At2g16990 816202 tetracycline transporter F:tetracycline transporter activity;P:unknown;C:endomembrane system;BOMPFA O.I. C.G. H.G.
16.3 99.5 3.9 At2g06890 3768157 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
16.1 99.5 117.4 At3g10500 820214 anac053 (Arabidopsis NAC domain containing protein 53) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOF O.I. C.G. H.G.
15.8 99.5 169.2 At4g11310 826733 cysteine proteinase, putative cysteine proteinase precursor-like protein O.I. C.G. H.G.
15.8 99.5 41.3 At2g46740 819287 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA O.I. C.G. H.G.
15.8 99.5 20.2 At1g67110 843031 CYP735A2 member of CYP709A O.I. C.G. H.G.
15.7 99.5 63.5 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.6 99.5 414.2 At1g73260 843660 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO O.I. C.G. H.G.
15.3 99.4 98.8 At1g12010 837753 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase O.I. C.G. H.G.
15.3 99.4 30.3 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
15.2 99.4 61.2 At1g78290 844164 - - O.I. C.G. H.G.
15.2 99.4 45.2 At2g17440 816250 leucine-rich repeat family protein F:protein binding;P:unknown;C:plasma membrane;MPBOFVA O.I. C.G. H.G.
14.9 99.4 14.1 At3g60490 825220 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
14.8 99.4 54.5 At2g29490 817498 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
14.8 99.4 35.1 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
14.7 99.4 804.0 At3g09260 820082 PYK10 Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica. O.I. C.G. H.G.
14.4 99.4 508.1 At1g73330 843668 ATDR4 encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level. O.I. C.G. H.G.
14.4 99.4 120.2 At4g38540 830011 monooxygenase, putative (MO2) F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM O.I. C.G. H.G.
14.4 99.4 32.8 At1g30760 839958 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
14.3 99.4 96.8 At5g13750 831220 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP O.I. C.G. H.G.
14.3 99.4 21.7 At4g23410 828440 TET5 (TETRASPANIN5) Member of TETRASPANIN family O.I. C.G. H.G.
14.0 99.4 92.3 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM O.I. C.G. H.G.
14.0 99.4 42.2 At3g21260 821680 glycolipid transfer protein-related F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MFPO O.I. C.G. H.G.
13.8 99.4 17.1 At3g24310 822019 MYB305 (myb domain protein 305) snapdragon myb protein 305 homolog (myb) O.I. C.G. H.G.
13.6 99.4 178.9 At2g38800 818462 calmodulin-binding protein-related F:calmodulin binding;P:unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
13.5 99.4 155.7 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
13.4 99.4 16.2 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA O.I. C.G. H.G.
13.3 99.4 190.9 At5g44380 834464 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM O.I. C.G. H.G.
13.3 99.4 55.2 At5g47720 834823 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
13.2 99.4 141.2 At1g55850 842035 ATCSLE1 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
13.2 99.4 6.0 At1g61750 842472 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
12.8 99.3 82.8 At5g20960 832221 AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1) Encodes aldehyde oxidase AA01. O.I. C.G. H.G.
12.7 99.3 610.9 At2g33830 817950 dormancy/auxin associated family protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.7 99.3 140.3 At2g29420 817491 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. O.I. C.G. H.G.
12.7 99.3 33.7 At3g19660 821503 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.6 99.3 7.3 At2g37820 818359 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
12.5 99.3 105.7 At1g18880 838469 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO O.I. C.G. H.G.
12.4 99.3 283.6 At5g01870 831705 lipid transfer protein, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
12.4 99.3 40.3 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
12.4 99.3 18.1 At5g06800 830570 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POFM O.I. C.G. H.G.
12.3 99.3 157.7 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF O.I. C.G. H.G.
12.3 99.3 34.9 At2g26650 817206 AKT1 (ARABIDOPSIS K TRANSPORTER 1) Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. O.I. C.G. H.G.
12.2 99.3 281.4 At1g76680 844001 OPR1 Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. O.I. C.G. H.G.
12.2 99.3 63.7 At1g60140 842309 ATTPS10 (trehalose phosphate synthase) Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
12.2 99.3 27.0 At2g25590 817098 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.1 99.3 56.7 At1g80050 844345 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. O.I. C.G. H.G.
12.1 99.3 38.2 At5g47050 834751 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA O.I. C.G. H.G.
12.0 99.3 64.0 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.9 99.3 96.1 At5g44790 834509 RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATP dependent copper transporter vital for ethylene response pathway O.I. C.G. H.G.
11.8 99.3 203.4 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
11.7 99.3 142.9 At1g80830 844422 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. O.I. C.G. H.G.
11.7 99.3 56.7 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
11.7 99.3 19.4 At1g50560 841477 CYP705A25 member of CYP705A O.I. C.G. H.G.
11.7 99.3 19.0 At5g59530 836072 2-oxoglutarate-dependent dioxygenase, putative F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM O.I. C.G. H.G.
11.6 99.3 34.2 At1g26440 839185 ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5) uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthine O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
143.8	99.9	340.7	At3g25190	822112	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
132.6	99.9	122.8	At3g46130	823756	MYB111 (MYB DOMAIN PROTEIN 111)	Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.	O.I.	C.G.	H.G.
118.4	99.9	626.1	At1g32450	840139	NRT1.5 (NITRATE TRANSPORTER 1.5)	Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.	O.I.	C.G.	H.G.
79.7	99.9	505.6	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
66.9	99.8	191.1	At3g23430	821924	PHO1 (phosphate 1)	mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.	O.I.	C.G.	H.G.
53.9	99.8	232.1	At5g59780	836099	MYB59 (MYB DOMAIN PROTEIN 59)	Encodes a putative transcription factor (MYB59).	O.I.	C.G.	H.G.
53.3	99.8	312.6	At4g39675	830122	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.8	99.8	306.4	At1g19530	838540	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.0	99.7	78.6	At2g15490	816041	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
33.8	99.7	374.2	At1g60740	842368	peroxiredoxin type 2, putative	F:oxidoreductase activity, antioxidant activity;P:cell redox homeostasis;C:plasma membrane;OBFPMA	O.I.	C.G.	H.G.
32.8	99.7	20.3	At1g60750	3767587	oxidoreductase	F:oxidoreductase activity;P:oxidation reduction;C:unknown	O.I.	C.G.	H.G.
31.5	99.7	89.2	At1g20160	838606	ATSBT5.2	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOFMA	O.I.	C.G.	H.G.
29.1	99.7	154.6	At5g10580	830923	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO	O.I.	C.G.	H.G.
28.2	99.7	212.8	At1g78340	844169	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
27.3	99.7	47.3	At1g28100	839703	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBFO	O.I.	C.G.	H.G.
26.7	99.7	206.4	At1g15380	838107	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BPOMFA	O.I.	C.G.	H.G.
26.7	99.7	115.0	At1g30720	839952	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
26.5	99.7	41.7	At2g45920	819200	U-box domain-containing protein	F:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAV	O.I.	C.G.	H.G.
26.3	99.7	22.1	At4g11880	826795	AGL14 (agamous-like 14)	AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.	O.I.	C.G.	H.G.
25.9	99.7	368.4	At2g01530	814682	MLP329 (MLP-LIKE PROTEIN 329)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.6	99.6	42.2	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
23.8	99.6	391.6	At1g66270	842944	BGLU21	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA	O.I.	C.G.	H.G.
23.1	99.6	221.9	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
22.5	99.6	206.3	At5g03240	831899	UBQ3 (POLYUBIQUITIN 3)	encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.	O.I.	C.G.	H.G.
21.8	99.6	44.1	At3g14680	820696	CYP72A14	putative cytochrome P450	O.I.	C.G.	H.G.
21.5	99.6	235.5	At2g43610	818963	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM	O.I.	C.G.	H.G.
21.4	99.6	47.8	At3g01260	821171	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
20.5	99.6	68.4	At3g26470	822252	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.4	99.6	803.0	At1g07610	837274	MT1C	one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance.	O.I.	C.G.	H.G.
20.0	99.6	139.1	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
19.8	99.6	43.9	At2g23030	816833	SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9)	encodes a member of SNF1-related protein kinases (SnRK2)	O.I.	C.G.	H.G.
19.6	99.6	294.9	At4g19880	827734	-	F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMA	O.I.	C.G.	H.G.
19.3	99.6	58.8	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
19.2	99.6	497.8	At3g14990	820728	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative	F:catalytic activity;P:response to cadmium ion, thiamin biosynthetic process;C:plasma membrane, vacuole;BMOAPF	O.I.	C.G.	H.G.
19.1	99.6	30.7	At4g18510	827583	CLE2 (CLAVATA3/ESR-RELATED)	CLE2, putative ligand, member of large gene family homologous to Clavata3	O.I.	C.G.	H.G.
18.9	99.5	78.4	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
18.9	99.5	77.0	At2g19110	816428	HMA4	Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport.	O.I.	C.G.	H.G.
18.0	99.5	125.0	At1g30400	839920	MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1)	glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.	O.I.	C.G.	H.G.
17.8	99.5	145.7	At4g30450	829168	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
17.3	99.5	207.1	At5g43780	834400	APS4	sulfate adenylyltransferase, ATP sulfurylase	O.I.	C.G.	H.G.
17.2	99.5	137.9	At3g53480	824516	PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
16.9	99.5	4.7	At5g03310	831879	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
16.8	99.5	537.1	At3g16460	820894	jacalin lectin family protein	F:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVA	O.I.	C.G.	H.G.
16.7	99.5	33.4	At5g10210	830885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.5	99.5	132.7	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
16.5	99.5	32.0	At2g16990	816202	tetracycline transporter	F:tetracycline transporter activity;P:unknown;C:endomembrane system;BOMPFA	O.I.	C.G.	H.G.
16.3	99.5	3.9	At2g06890	3768157	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
16.1	99.5	117.4	At3g10500	820214	anac053 (Arabidopsis NAC domain containing protein 53)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PBOF	O.I.	C.G.	H.G.
15.8	99.5	169.2	At4g11310	826733	cysteine proteinase, putative	cysteine proteinase precursor-like protein	O.I.	C.G.	H.G.
15.8	99.5	41.3	At2g46740	819287	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA	O.I.	C.G.	H.G.
15.8	99.5	20.2	At1g67110	843031	CYP735A2	member of CYP709A	O.I.	C.G.	H.G.
15.7	99.5	63.5	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.6	99.5	414.2	At1g73260	843660	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO	O.I.	C.G.	H.G.
15.3	99.4	98.8	At1g12010	837753	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase	O.I.	C.G.	H.G.
15.3	99.4	30.3	At2g29330	817482	TRI (tropinone reductase)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
15.2	99.4	61.2	At1g78290	844164	-	-	O.I.	C.G.	H.G.
15.2	99.4	45.2	At2g17440	816250	leucine-rich repeat family protein	F:protein binding;P:unknown;C:plasma membrane;MPBOFVA	O.I.	C.G.	H.G.
14.9	99.4	14.1	At3g60490	825220	AP2 domain-containing transcription factor TINY, putative	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
14.8	99.4	54.5	At2g29490	817498	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
14.8	99.4	35.1	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
14.7	99.4	804.0	At3g09260	820082	PYK10	Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.	O.I.	C.G.	H.G.
14.4	99.4	508.1	At1g73330	843668	ATDR4	encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.	O.I.	C.G.	H.G.
14.4	99.4	120.2	At4g38540	830011	monooxygenase, putative (MO2)	F:monooxygenase activity;P:metabolic process;C:unknown;BFOPAM	O.I.	C.G.	H.G.
14.4	99.4	32.8	At1g30760	839958	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
14.3	99.4	96.8	At5g13750	831220	ZIFL1 (ZINC INDUCED FACILITATOR-like 1)	F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAP	O.I.	C.G.	H.G.
14.3	99.4	21.7	At4g23410	828440	TET5 (TETRASPANIN5)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
14.0	99.4	92.3	At5g65210	836646	TGA1	F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM	O.I.	C.G.	H.G.
14.0	99.4	42.2	At3g21260	821680	glycolipid transfer protein-related	F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MFPO	O.I.	C.G.	H.G.
13.8	99.4	17.1	At3g24310	822019	MYB305 (myb domain protein 305)	snapdragon myb protein 305 homolog (myb)	O.I.	C.G.	H.G.
13.6	99.4	178.9	At2g38800	818462	calmodulin-binding protein-related	F:calmodulin binding;P:unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
13.5	99.4	155.7	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
13.4	99.4	16.2	At5g52790	835356	CBS domain-containing protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
13.3	99.4	190.9	At5g44380	834464	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:response to oxidative stress;C:cell wall;BFOPAM	O.I.	C.G.	H.G.
13.3	99.4	55.2	At5g47720	834823	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
13.2	99.4	141.2	At1g55850	842035	ATCSLE1	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
13.2	99.4	6.0	At1g61750	842472	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
12.8	99.3	82.8	At5g20960	832221	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	Encodes aldehyde oxidase AA01.	O.I.	C.G.	H.G.
12.7	99.3	610.9	At2g33830	817950	dormancy/auxin associated family protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.7	99.3	140.3	At2g29420	817491	ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.	O.I.	C.G.	H.G.
12.7	99.3	33.7	At3g19660	821503	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.6	99.3	7.3	At2g37820	818359	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
12.5	99.3	105.7	At1g18880	838469	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBFO	O.I.	C.G.	H.G.
12.4	99.3	283.6	At5g01870	831705	lipid transfer protein, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
12.4	99.3	40.3	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
12.4	99.3	18.1	At5g06800	830570	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;POFM	O.I.	C.G.	H.G.
12.3	99.3	157.7	At4g34131	829559	UGT73B3 (UDP-glucosyl transferase 73B3)	F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
12.3	99.3	34.9	At2g26650	817206	AKT1 (ARABIDOPSIS K TRANSPORTER 1)	Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis.	O.I.	C.G.	H.G.
12.2	99.3	281.4	At1g76680	844001	OPR1	Encodes a a member of an alpha/beta barrel fold family of FMN-containing oxidoreductases. One of two closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Up-regulated by senescence and jasmonic acid. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.	O.I.	C.G.	H.G.
12.2	99.3	63.7	At1g60140	842309	ATTPS10 (trehalose phosphate synthase)	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
12.2	99.3	27.0	At2g25590	817098	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.1	99.3	56.7	At1g80050	844345	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.	O.I.	C.G.	H.G.
12.1	99.3	38.2	At5g47050	834751	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVFBA	O.I.	C.G.	H.G.
12.0	99.3	64.0	At2g44010	819006	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.9	99.3	96.1	At5g44790	834509	RAN1 (RESPONSIVE-TO-ANTAGONIST 1)	ATP dependent copper transporter vital for ethylene response pathway	O.I.	C.G.	H.G.
11.8	99.3	203.4	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
11.7	99.3	142.9	At1g80830	844422	NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)	Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.	O.I.	C.G.	H.G.
11.7	99.3	56.7	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
11.7	99.3	19.4	At1g50560	841477	CYP705A25	member of CYP705A	O.I.	C.G.	H.G.
11.7	99.3	19.0	At5g59530	836072	2-oxoglutarate-dependent dioxygenase, putative	F:transferase activity, transferring glycosyl groups;P:unknown;C:unknown;POBFM	O.I.	C.G.	H.G.
11.6	99.3	34.2	At1g26440	839185	ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5)	uptake assays in a yeast mutant indicated this splice variant is not a cellular importer for allantoin, uracil or xanthine	O.I.	C.G.	H.G.

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GSM ID	GSM291128
Assay name	root - 08% oxygen - 48h - B
GSE experiment	GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

Microarray experiments to specifically-expressed genes

GSM ID GSM291128 Assay name root - 08% oxygen - 48h - B GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

GSM ID GSM291128

Assay name root - 08% oxygen - 48h - B

GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants