CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM291113

Assay name root - 21% oxygen - 30min - F

GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
65.1 99.8 89.6 At4g28940 829015 catalytic F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO O.I. C.G. H.G.
64.2 99.8 33.7 At4g31970 829327 CYP82C2 member of CYP82C O.I. C.G. H.G.
62.5 99.8 110.4 At2g15120 3768033 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
44.3 99.8 28.1 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.4 99.7 64.3 At5g38910 833883 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
30.6 99.7 235.3 At4g11310 826733 cysteine proteinase, putative cysteine proteinase precursor-like protein O.I. C.G. H.G.
28.5 99.7 114.8 At1g18970 838478 GLP4 (GERMIN-LIKE PROTEIN 4) Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record). O.I. C.G. H.G.
26.0 99.7 15.9 At3g55790 824745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFV O.I. C.G. H.G.
25.6 99.7 64.0 At2g30750 817626 CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12) putative cytochrome P450 O.I. C.G. H.G.
25.4 99.6 85.5 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
24.9 99.6 141.8 At3g25190 822112 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
24.5 99.6 42.1 At4g37010 829855 caltractin, putative / centrin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB O.I. C.G. H.G.
22.7 99.6 180.7 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
22.2 99.6 104.9 At1g30720 839952 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA O.I. C.G. H.G.
20.6 99.6 137.4 At4g37520 829907 peroxidase 50 (PER50) (P50) (PRXR2) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM O.I. C.G. H.G.
19.4 99.6 124.1 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
19.3 99.6 50.4 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
19.2 99.6 34.8 At4g13860 827020 glycine-rich RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
18.9 99.5 257.7 At3g01420 821135 DOX1 Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. O.I. C.G. H.G.
18.6 99.5 108.8 At3g09220 820078 LAC7 (laccase 7) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. C.G. H.G.
18.4 99.5 36.7 At1g26390 839181 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
17.9 99.5 172.0 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
17.6 99.5 75.6 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
17.0 99.5 87.4 At5g44610 834489 MAP18 (Microtubule-associated Protein 18) Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization. O.I. C.G. H.G.
16.9 99.5 12.2 At4g04990 825841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV O.I. C.G. H.G.
16.6 99.5 79.7 At4g29270 829048 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. C.G. H.G.
16.4 99.5 15.0 At4g22070 828296 WRKY31 member of WRKY Transcription Factor; Group II-b O.I. C.G. H.G.
16.3 99.5 104.4 At5g43580 834378 serine-type endopeptidase inhibitor Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
16.3 99.5 61.6 At1g21100 838706 O-methyltransferase, putative F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
16.3 99.5 28.5 At4g14060 827042 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
15.8 99.5 263.5 At5g46890 834734 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
15.7 99.5 92.4 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. O.I. C.G. H.G.
15.1 99.4 311.8 At1g66270 842944 BGLU21 F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA O.I. C.G. H.G.
15.0 99.4 44.5 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
14.9 99.4 24.7 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA O.I. C.G. H.G.
14.8 99.4 217.5 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase O.I. C.G. H.G.
14.8 99.4 136.9 At3g09270 820083 ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
14.7 99.4 65.9 At5g37990 833778 S-adenosylmethionine-dependent methyltransferase/ methyltransferase F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF O.I. C.G. H.G.
14.4 99.4 118.0 At5g59520 836071 ZIP2 encodes a metal ion transporter whose expression is regulated by copper. O.I. C.G. H.G.
14.0 99.4 59.0 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA O.I. C.G. H.G.
13.9 99.4 60.9 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO O.I. C.G. H.G.
13.8 99.4 106.6 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
13.7 99.4 61.3 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
13.5 99.4 33.7 At4g05200 825868 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
13.4 99.4 219.4 At1g17860 838365 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO O.I. C.G. H.G.
13.3 99.4 85.3 At1g16300 838199 GAPCP-2 F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA O.I. C.G. H.G.
13.2 99.4 293.0 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
12.9 99.3 41.9 At5g38030 833782 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
12.8 99.3 152.0 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.8 99.3 9.8 At2g02610 814790 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
12.7 99.3 16.8 At4g28860 829007 ckl4 (Casein Kinase I-like 4) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOBPFVA O.I. C.G. H.G.
12.4 99.3 25.1 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
12.3 99.3 28.3 At4g35150 829667 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO O.I. C.G. H.G.
12.1 99.3 22.2 At2g47200 819333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.9 99.3 57.3 At1g22360 838843 AtUGT85A2 (UDP-glucosyl transferase 85A2) F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOF O.I. C.G. H.G.
11.9 99.3 8.3 At4g24180 828519 - F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
11.8 99.3 46.2 At4g17800 827502 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF O.I. C.G. H.G.
11.8 99.3 35.5 At3g01260 821171 aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA O.I. C.G. H.G.
11.6 99.3 61.4 At2g40110 818600 yippee family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
11.5 99.3 245.6 At2g01530 814682 MLP329 (MLP-LIKE PROTEIN 329) F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
11.5 99.3 99.2 At2g16005 816096 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO O.I. C.G. H.G.
11.4 99.3 44.2 At2g15490 816041 UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF O.I. C.G. H.G.
11.3 99.3 43.9 At2g47690 819382 NADH-ubiquinone oxidoreductase-related F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPOM O.I. C.G. H.G.
11.3 99.3 24.1 At4g25250 828628 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
11.2 99.2 168.6 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. O.I. C.G. H.G.
11.2 99.2 44.6 At5g44550 834482 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
11.0 99.2 153.2 At2g43535 818955 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
11.0 99.2 106.1 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.
11.0 99.2 47.5 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.9 99.2 76.8 At1g09740 837502 ethylene-responsive protein, putative F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM O.I. C.G. H.G.
10.9 99.2 18.5 At3g02240 820386 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.8 99.2 158.7 At5g05960 830481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
10.8 99.2 112.3 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
10.8 99.2 77.0 At2g22330 816765 CYP79B3 Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. O.I. C.G. H.G.
10.8 99.2 72.9 At1g30700 839950 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA O.I. C.G. H.G.
10.8 99.2 61.7 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA O.I. C.G. H.G.
10.7 99.2 113.0 At4g30450 829168 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA O.I. C.G. H.G.
10.7 99.2 52.4 At3g06390 819813 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.7 99.2 43.7 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
10.6 99.2 21.5 At1g53680 841805 ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
10.4 99.2 169.7 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
10.2 99.2 63.2 At1g17190 838290 ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
10.0 99.2 256.0 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. O.I. C.G. H.G.
10.0 99.2 34.9 At1g74590 843799 GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
10.0 99.2 27.3 At5g24290 832496 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
10.0 99.2 23.6 At1g05650 837072 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
10.0 99.2 20.9 At5g61250 836246 AtGUS1 (Arabidopsis thaliana glucuronidase 1) Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted. O.I. C.G. H.G.
10.0 99.2 15.1 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. O.I. C.G. H.G.
9.8 99.1 162.6 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM O.I. C.G. H.G.
9.8 99.1 66.4 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
9.8 99.1 17.1 At1g35250 840414 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA O.I. C.G. H.G.
9.7 99.1 149.0 At1g76790 844013 O-methyltransferase family 2 protein F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
9.7 99.1 19.4 At3g15357 820774 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;OMBFPVA O.I. C.G. H.G.
9.6 99.1 233.4 At1g66240 842940 ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) F:metal ion binding;P:metal ion transport;C:endomembrane system;PFBMOA O.I. C.G. H.G.
9.6 99.1 191.5 At3g53980 824565 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
9.6 99.1 162.0 At3g01190 821314 peroxidase 27 (PER27) (P27) (PRXR7) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
9.6 99.1 121.7 At5g26280 832697 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PFOM O.I. C.G. H.G.
9.5 99.1 232.1 At4g22212 828313 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
9.4 99.1 117.0 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
9.4 99.1 17.2 At5g20550 832177 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
65.1	99.8	89.6	At4g28940	829015	catalytic	F:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPO	O.I.	C.G.	H.G.
64.2	99.8	33.7	At4g31970	829327	CYP82C2	member of CYP82C	O.I.	C.G.	H.G.
62.5	99.8	110.4	At2g15120	3768033	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
44.3	99.8	28.1	At5g62330	836354	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.4	99.7	64.3	At5g38910	833883	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
30.6	99.7	235.3	At4g11310	826733	cysteine proteinase, putative	cysteine proteinase precursor-like protein	O.I.	C.G.	H.G.
28.5	99.7	114.8	At1g18970	838478	GLP4 (GERMIN-LIKE PROTEIN 4)	Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).	O.I.	C.G.	H.G.
26.0	99.7	15.9	At3g55790	824745	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFV	O.I.	C.G.	H.G.
25.6	99.7	64.0	At2g30750	817626	CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)	putative cytochrome P450	O.I.	C.G.	H.G.
25.4	99.6	85.5	At5g38020	833781	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
24.9	99.6	141.8	At3g25190	822112	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
24.5	99.6	42.1	At4g37010	829855	caltractin, putative / centrin, putative	F:calcium ion binding;P:biological_process unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
22.7	99.6	180.7	At5g23830	832448	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
22.2	99.6	104.9	At1g30720	839952	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOA	O.I.	C.G.	H.G.
20.6	99.6	137.4	At4g37520	829907	peroxidase 50 (PER50) (P50) (PRXR2)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM	O.I.	C.G.	H.G.
19.4	99.6	124.1	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
19.3	99.6	50.4	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
19.2	99.6	34.8	At4g13860	827020	glycine-rich RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
18.9	99.5	257.7	At3g01420	821135	DOX1	Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.	O.I.	C.G.	H.G.
18.6	99.5	108.8	At3g09220	820078	LAC7 (laccase 7)	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).	O.I.	C.G.	H.G.
18.4	99.5	36.7	At1g26390	839181	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
17.9	99.5	172.0	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
17.6	99.5	75.6	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
17.0	99.5	87.4	At5g44610	834489	MAP18 (Microtubule-associated Protein 18)	Encodes a protein of unknown function with seven repeated VEEKK motifs. RNAi and overexpression experiments suggest that the gene is not involved in cell division but might be consequential for cell shape of epidermal and cortical cells. The protein encoded by this gene binds to cortical microtubules and inhibits tubulin polymerization.	O.I.	C.G.	H.G.
16.9	99.5	12.2	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	O.I.	C.G.	H.G.
16.6	99.5	79.7	At4g29270	829048	acid phosphatase class B family protein	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO	O.I.	C.G.	H.G.
16.4	99.5	15.0	At4g22070	828296	WRKY31	member of WRKY Transcription Factor; Group II-b	O.I.	C.G.	H.G.
16.3	99.5	104.4	At5g43580	834378	serine-type endopeptidase inhibitor	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
16.3	99.5	61.6	At1g21100	838706	O-methyltransferase, putative	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
16.3	99.5	28.5	At4g14060	827042	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.8	99.5	263.5	At5g46890	834734	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
15.7	99.5	92.4	At5g48010	834852	THAS1 (THALIANOL SYNTHASE 1)	Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.	O.I.	C.G.	H.G.
15.1	99.4	311.8	At1g66270	842944	BGLU21	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFA	O.I.	C.G.	H.G.
15.0	99.4	44.5	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
14.9	99.4	24.7	At3g04570	819613	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;BPMOFVA	O.I.	C.G.	H.G.
14.8	99.4	217.5	At5g63600	836480	FLS5 (FLAVONOL SYNTHASE 5)	encodes a protein whose sequence is similar to flavonol synthase	O.I.	C.G.	H.G.
14.8	99.4	136.9	At3g09270	820083	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
14.7	99.4	65.9	At5g37990	833778	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:endomembrane system;POBMF	O.I.	C.G.	H.G.
14.4	99.4	118.0	At5g59520	836071	ZIP2	encodes a metal ion transporter whose expression is regulated by copper.	O.I.	C.G.	H.G.
14.0	99.4	59.0	At3g24290	822017	AMT1	F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA	O.I.	C.G.	H.G.
13.9	99.4	60.9	At2g44380	819045	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
13.8	99.4	106.6	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
13.7	99.4	61.3	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
13.5	99.4	33.7	At4g05200	825868	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
13.4	99.4	219.4	At1g17860	838365	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;PO	O.I.	C.G.	H.G.
13.3	99.4	85.3	At1g16300	838199	GAPCP-2	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA	O.I.	C.G.	H.G.
13.2	99.4	293.0	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
12.9	99.3	41.9	At5g38030	833782	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
12.8	99.3	152.0	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.8	99.3	9.8	At2g02610	814790	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
12.7	99.3	16.8	At4g28860	829007	ckl4 (Casein Kinase I-like 4)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus, cytoplasm;MOBPFVA	O.I.	C.G.	H.G.
12.4	99.3	25.1	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
12.3	99.3	28.3	At4g35150	829667	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFMO	O.I.	C.G.	H.G.
12.1	99.3	22.2	At2g47200	819333	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.9	99.3	57.3	At1g22360	838843	AtUGT85A2 (UDP-glucosyl transferase 85A2)	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOF	O.I.	C.G.	H.G.
11.9	99.3	8.3	At4g24180	828519	-	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
11.8	99.3	46.2	At4g17800	827502	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOF	O.I.	C.G.	H.G.
11.8	99.3	35.5	At3g01260	821171	aldose 1-epimerase/ carbohydrate binding / catalytic/ isomerase	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA	O.I.	C.G.	H.G.
11.6	99.3	61.4	At2g40110	818600	yippee family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
11.5	99.3	245.6	At2g01530	814682	MLP329 (MLP-LIKE PROTEIN 329)	F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.5	99.3	99.2	At2g16005	816096	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO	O.I.	C.G.	H.G.
11.4	99.3	44.2	At2g15490	816041	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:response to other organism;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
11.3	99.3	43.9	At2g47690	819382	NADH-ubiquinone oxidoreductase-related	F:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPOM	O.I.	C.G.	H.G.
11.3	99.3	24.1	At4g25250	828628	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
11.2	99.2	168.6	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	O.I.	C.G.	H.G.
11.2	99.2	44.6	At5g44550	834482	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.0	99.2	153.2	At2g43535	818955	trypsin inhibitor, putative	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
11.0	99.2	106.1	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.
11.0	99.2	47.5	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.9	99.2	76.8	At1g09740	837502	ethylene-responsive protein, putative	F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAOFM	O.I.	C.G.	H.G.
10.9	99.2	18.5	At3g02240	820386	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.8	99.2	158.7	At5g05960	830481	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
10.8	99.2	112.3	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
10.8	99.2	77.0	At2g22330	816765	CYP79B3	Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.	O.I.	C.G.	H.G.
10.8	99.2	72.9	At1g30700	839950	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOA	O.I.	C.G.	H.G.
10.8	99.2	61.7	At2g25810	817123	TIP4	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA	O.I.	C.G.	H.G.
10.7	99.2	113.0	At4g30450	829168	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVA	O.I.	C.G.	H.G.
10.7	99.2	52.4	At3g06390	819813	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.7	99.2	43.7	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
10.6	99.2	21.5	At1g53680	841805	ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
10.4	99.2	169.7	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
10.2	99.2	63.2	At1g17190	838290	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
10.0	99.2	256.0	At4g12550	826868	AIR1	isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.	O.I.	C.G.	H.G.
10.0	99.2	34.9	At1g74590	843799	GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
10.0	99.2	27.3	At5g24290	832496	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
10.0	99.2	23.6	At1g05650	837072	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
10.0	99.2	20.9	At5g61250	836246	AtGUS1 (Arabidopsis thaliana glucuronidase 1)	Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.	O.I.	C.G.	H.G.
10.0	99.2	15.1	At3g45410	823679	lectin protein kinase family protein	encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.	O.I.	C.G.	H.G.
9.8	99.1	162.6	At2g21045	816639	-	F:unknown;P:aging;C:unknown;BOPAFM	O.I.	C.G.	H.G.
9.8	99.1	66.4	At1g02360	837724	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
9.8	99.1	17.1	At1g35250	840414	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPA	O.I.	C.G.	H.G.
9.7	99.1	149.0	At1g76790	844013	O-methyltransferase family 2 protein	F:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
9.7	99.1	19.4	At3g15357	820774	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;OMBFPVA	O.I.	C.G.	H.G.
9.6	99.1	233.4	At1g66240	842940	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1)	F:metal ion binding;P:metal ion transport;C:endomembrane system;PFBMOA	O.I.	C.G.	H.G.
9.6	99.1	191.5	At3g53980	824565	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
9.6	99.1	162.0	At3g01190	821314	peroxidase 27 (PER27) (P27) (PRXR7)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
9.6	99.1	121.7	At5g26280	832697	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PFOM	O.I.	C.G.	H.G.
9.5	99.1	232.1	At4g22212	828313	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
9.4	99.1	117.0	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
9.4	99.1	17.2	At5g20550	832177	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.

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GSM ID	GSM291113
Assay name	root - 21% oxygen - 30min - F
GSE experiment	GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

Microarray experiments to specifically-expressed genes

GSM ID GSM291113 Assay name root - 21% oxygen - 30min - F GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

GSM ID GSM291113

Assay name root - 21% oxygen - 30min - F

GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants