Microarray experiments to specifically-expressed genes

GSM ID GSM291020
Assay name root - 08% oxygen - 2h - F
GSE experiment GSE11558: transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
82.799.938.3At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
63.399.833.4At4g31970829327CYP82C2member of CYP82CO.I.C.G.H.G.
61.499.8109.5At2g151203768033-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
47.799.878.1At5g38910833883germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBO.I.C.G.H.G.
46.999.876.1At4g28940829015catalyticF:catalytic activity;P:nucleoside metabolic process;C:endomembrane system;BPOO.I.C.G.H.G.
35.399.718.6At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVO.I.C.G.H.G.
34.999.7224.0At5g23830832448MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
33.099.7163.3At3g25190822112nodulin, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAO.I.C.G.H.G.
29.799.719.9At3g60490825220AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
29.499.7153.0At4g26320828738AGP13 (arabinogalactan protein 13)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
24.399.6109.7At1g30720839952FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAO.I.C.G.H.G.
23.599.6104.3At1g18970838478GLP4 (GERMIN-LIKE PROTEIN 4)Encodes a germin-like protein with possible oxalate oxidase activity (based on GenBank record).O.I.C.G.H.G.
22.199.6199.9At4g11310826733cysteine proteinase, putativecysteine proteinase precursor-like proteinO.I.C.G.H.G.
21.099.657.9At2g30750817626CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)putative cytochrome P450O.I.C.G.H.G.
20.099.660.2At4g17800827502DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFO.I.C.G.H.G.
19.599.6103.6At2g22330816765CYP79B3Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.O.I.C.G.H.G.
19.399.6136.6At5g59520836071ZIP2encodes a metal ion transporter whose expression is regulated by copper.O.I.C.G.H.G.
19.299.627.9At2g47200819333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.799.534.3At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAO.I.C.G.H.G.
18.499.557.2At5g44550834482integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.899.5123.5At2g16005816096MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFOO.I.C.G.H.G.
17.499.526.7At3g04570819613DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;BPMOFVAO.I.C.G.H.G.
17.099.5244.3At3g01420821135DOX1Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid.O.I.C.G.H.G.
17.099.549.4At3g28550822485proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVAO.I.C.G.H.G.
16.899.5166.6At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.C.G.H.G.
16.699.5230.4At5g63600836480FLS5 (FLAVONOL SYNTHASE 5)encodes a protein whose sequence is similar to flavonol synthaseO.I.C.G.H.G.
16.699.565.3At3g06390819813integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
16.499.512.1At4g04990825841unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBVO.I.C.G.H.G.
16.299.572.7At4g23700828470ATCHX17 (CATION/H+ EXCHANGER 17)member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
15.999.557.1At5g23840832449MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.999.528.5At5g06570830545hydrolaseF:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
14.999.470.5At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.599.432.4At4g37010829855caltractin, putative / centrin, putativeF:calcium ion binding;P:biological_process unknown;C:unknown;MFPOBO.I.C.G.H.G.
14.299.432.2At1g26390839181FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
14.099.421.0At3g02240820386unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.999.448.5At2g47690819382NADH-ubiquinone oxidoreductase-relatedF:molecular_function unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPOMO.I.C.G.H.G.
13.799.4111.8At4g37520829907peroxidase 50 (PER50) (P50) (PRXR2)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOMO.I.C.G.H.G.
13.799.4106.1At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.799.48.9At4g24180828519-F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVO.I.C.G.H.G.
13.699.466.5At2g40110818600yippee family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
13.099.4128.4At3g09270820083ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
13.099.459.6At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
12.999.3290.1At4g11650826770ATOSM34 (osmotin 34)osmotin-like proteinO.I.C.G.H.G.
12.999.3215.6At1g17860838365trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:biological_process unknown;C:apoplast, cell wall;POO.I.C.G.H.G.
12.899.392.4At5g43580834378serine-type endopeptidase inhibitorPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
12.799.361.6At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.O.I.C.G.H.G.
12.799.315.9At1g53640841800unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOBVO.I.C.G.H.G.
12.599.337.0At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
12.499.3275.6At4g12510826863protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
12.499.374.5At1g02360837724chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
12.399.349.5At1g72360843568ethylene-responsive element-binding protein, putativeencodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.O.I.C.G.H.G.
12.299.35.7At1g61750842472-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.799.3213.6At4g30170829140peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
11.799.386.4At3g09220820078LAC7 (laccase 7)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
11.699.358.2At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVO.I.C.G.H.G.
11.699.355.5At2g44380819045DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;PMOO.I.C.G.H.G.
11.599.3245.7At2g01530814682MLP329 (MLP-LIKE PROTEIN 329)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
11.499.3116.7At4g30450829168glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFVAO.I.C.G.H.G.
11.399.3174.7At2g21045816639-F:unknown;P:aging;C:unknown;BOPAFMO.I.C.G.H.G.
11.199.2267.6At1g66270842944BGLU21F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellular response to phosphate starvation, response to salt stress;C:vacuole, membrane;BOPMFAO.I.C.G.H.G.
11.199.252.5At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAO.I.C.G.H.G.
11.199.213.0At4g29140829035MATE efflux protein-relatedF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
11.099.2249.8At4g22212828313-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
11.099.2168.5At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
11.099.2126.6At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
11.099.2105.7At5g47990834850CYP705A5encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.O.I.C.G.H.G.
11.099.277.3At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.O.I.C.G.H.G.
10.999.240.5At2g45430819151DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMFBOO.I.C.G.H.G.
10.999.217.8At3g59370825106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
10.899.2169.7At4g04830825820methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
10.899.225.7At2g42350818836zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
10.799.267.6At3g22570821829protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
10.799.250.0At1g21100838706O-methyltransferase, putativeF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
10.799.238.1At1g29330839807ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2)Encodes a protein similar in sequence to animal and yeast endoplasmic reticulum retention signal receptor. This protein can functionally complement the yeast homologue. Transcript is detected in flower buds, stems, root, and leaves.O.I.C.G.H.G.
10.699.255.2At5g38020833781S-adenosyl-L-methionine:carboxyl methyltransferase family proteinencodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)O.I.C.G.H.G.
10.499.259.6At2g44010819006unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.499.222.8At4g14060827042major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
10.499.221.3At1g53680841805ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
10.399.2151.5At5g53250835406AGP22 (ARABINOGALACTAN PROTEIN 22)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
10.399.231.9At2g47130819326short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
10.299.259.9At2g25810817123TIP4F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAO.I.C.G.H.G.
10.299.229.7At4g13235826940EDA21 (embryo sac development arrest 21)Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
10.199.2223.3At2g38380818419peroxidase 22 (PER22) (P22) (PRXEA) / basic peroxidase EF:electron carrier activity, peroxidase activity, heme binding;P:response to salt stress;C:plant-type cell wall;PFOO.I.C.G.H.G.
10.199.2159.3At3g13610820564oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
10.199.280.7At5g48000834851CYP708A2Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation.O.I.C.G.H.G.
10.199.236.6At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
10.099.288.4At2g18980816415peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
10.099.274.0At1g16300838199GAPCP-2F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMAO.I.C.G.H.G.
10.099.261.8At4g29270829048acid phosphatase class B family proteinF:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOO.I.C.G.H.G.
9.999.1133.5At2g37750818352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.999.113.5At1g07260837237UGT71C3 (UDP-GLUCOSYL TRANSFERASE 71C3)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
9.899.1253.5At4g12550826868AIR1isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus.O.I.C.G.H.G.
9.899.1157.6At3g12500820429ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.O.I.C.G.H.G.
9.899.121.3At1g70170843353MMP (MATRIX METALLOPROTEINASE)mutant has Late flowering; Early senescence; Matrix MetalloproteinaseO.I.C.G.H.G.
9.799.123.5At1g68450843174VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
9.699.1149.9At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
9.699.17.3At4g13440826976calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
9.599.1126.6At4g23690828469disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
9.499.1199.2At4g21850828273methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
9.399.1105.0At1g02900839389RALF1 (RAPID ALKALINIZATION FACTOR 1)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.



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