CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284397

Assay name Arabidopsis GGSc1

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1151.1 100.0 178.0 At4g03930 825703 enzyme inhibitor/ pectinesterase F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. C.G. H.G.
980.1 100.0 907.7 At3g23450 3768908 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system O.I. C.G. H.G.
930.5 100.0 319.7 At3g07980 819989 MAPKKK6 MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential. O.I. C.G. H.G.
695.9 100.0 171.9 At3g21500 821704 1-deoxy-D-xylulose-5-phosphate synthase Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. O.I. C.G. H.G.
685.6 100.0 998.8 At4g15750 827253 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
616.2 100.0 113.0 At1g20550 838643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
586.1 100.0 533.4 At5g47350 834782 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
536.9 100.0 150.0 At1g49800 841403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
502.5 100.0 242.4 At3g58780 825047 SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. O.I. C.G. H.G.
462.7 100.0 91.9 At3g13540 820556 ATMYB5 (MYB DOMAIN PROTEIN 5) Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches). O.I. C.G. H.G.
442.9 100.0 42.5 At2g45840 819192 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOV O.I. C.G. H.G.
423.4 100.0 463.1 At1g30530 839933 UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1) The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin O.I. C.G. H.G.
417.8 100.0 179.4 At1g11590 837702 pectin methylesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM O.I. C.G. H.G.
385.9 100.0 88.2 At4g19380 827679 alcohol oxidase-related F:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
328.5 100.0 564.2 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA O.I. C.G. H.G.
315.1 100.0 1178.2 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
299.3 100.0 519.4 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
291.2 100.0 931.7 At2g07671 815343 H+-transporting two-sector ATPase, C subunit family protein F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP O.I. C.G. H.G.
274.1 100.0 208.1 At3g49270 824088 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
262.7 100.0 232.4 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
249.9 100.0 53.2 At4g09820 826571 TT8 (TRANSPARENT TESTA 8) TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. O.I. C.G. H.G.
246.4 100.0 170.8 At1g26930 839583 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA O.I. C.G. H.G.
245.2 100.0 115.0 At1g71180 843458 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein F:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
234.2 100.0 72.1 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
230.0 100.0 72.7 At1g17260 838297 AHA10 (Autoinhibited H(+)-ATPase isoform 10) belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process O.I. C.G. H.G.
217.4 100.0 196.8 At1g24540 839069 CYP86C1 member of CYP86C O.I. C.G. H.G.
215.8 100.0 81.6 At4g32170 829349 CYP96A2 member of CYP96A O.I. C.G. H.G.
214.9 100.0 106.3 At3g49050 824066 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB O.I. C.G. H.G.
204.6 100.0 44.2 At2g37260 818303 TTG2 (TRANSPARENT TESTA GLABRA 2) Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent. O.I. C.G. H.G.
201.8 100.0 129.6 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA O.I. C.G. H.G.
177.8 100.0 55.6 At2g34200 817981 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. C.G. H.G.
174.4 100.0 69.4 At5g35550 833520 TT2 (TRANSPARENT TESTA 2) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
162.7 99.9 101.3 At5g14130 831263 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
161.0 99.9 288.1 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
155.8 99.9 41.5 At1g66460 842964 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
155.2 99.9 61.6 At5g44700 834499 GSO2 (GASSHO 2) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. O.I. C.G. H.G.
153.8 99.9 98.5 At5g06350 830523 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
153.1 99.9 423.9 At5g42800 834291 DFR (DIHYDROFLAVONOL 4-REDUCTASE) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. O.I. C.G. H.G.
150.7 99.9 344.6 At2g07711 3768480 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
145.1 99.9 228.7 At1g06550 837166 enoyl-CoA hydratase/isomerase family protein F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
142.3 99.9 270.6 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. O.I. C.G. H.G.
142.0 99.9 79.7 At1g26210 839162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
140.7 99.9 39.7 At5g55320 835625 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:unknown;C:unknown;BPOF O.I. C.G. H.G.
137.4 99.9 212.9 At3g05600 819726 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
136.6 99.9 288.6 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
133.9 99.9 86.9 At1g79110 844252 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF O.I. C.G. H.G.
128.1 99.9 133.3 At5g23890 832454 - F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV O.I. C.G. H.G.
127.4 99.9 57.9 At4g17480 827459 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
126.6 99.9 207.1 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA O.I. C.G. H.G.
125.1 99.9 213.0 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
124.0 99.9 382.0 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. C.G. H.G.
123.9 99.9 64.1 At1g52500 841681 ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1. O.I. C.G. H.G.
120.1 99.9 88.8 At4g00270 827164 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM O.I. C.G. H.G.
119.5 99.9 124.5 At5g51950 835270 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
118.7 99.9 43.7 At3g09710 820128 IQD1 (IQ-DOMAIN 1) Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue. O.I. C.G. H.G.
116.4 99.9 212.4 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. O.I. C.G. H.G.
114.6 99.9 76.9 At1g09790 837508 COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
112.0 99.9 392.0 At2g07698 815374 ATP synthase alpha chain, mitochondrial, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF O.I. C.G. H.G.
109.4 99.9 125.6 At3g11030 820274 unknown protein F:unknown;P:unknown;C:unknown;MPOBFVA O.I. C.G. H.G.
108.5 99.9 1413.8 At3g08770 820024 LTP6 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
106.0 99.9 44.2 At1g02940 839479 GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
105.9 99.9 37.0 At1g77520 844088 O-methyltransferase family 2 protein F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM O.I. C.G. H.G.
105.7 99.9 96.5 At5g44080 834431 bZIP transcription factor family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV O.I. C.G. H.G.
105.5 99.9 197.4 At3g20520 821598 SVL3 (SHV3-LIKE 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM O.I. C.G. H.G.
103.0 99.9 40.2 At1g09440 837467 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
102.7 99.9 103.4 At3g20100 821553 CYP705A19 member of CYP705A O.I. C.G. H.G.
102.7 99.9 34.8 At3g49900 824152 BTB/POZ domain-containing protein F:protein binding;P:unknown;C:unknown;PO O.I. C.G. H.G.
98.0 99.9 72.8 At2g42040 818804 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
97.7 99.9 180.7 At1g44810 841045 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
97.5 99.9 235.3 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
96.6 99.9 78.6 At3g46770 823830 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
96.3 99.9 99.1 At1g12330 837787 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PFOM O.I. C.G. H.G.
94.3 99.9 141.3 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA O.I. C.G. H.G.
94.3 99.9 51.8 At2g23690 816900 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO O.I. C.G. H.G.
94.2 99.9 82.4 At1g16390 838209 ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA O.I. C.G. H.G.
93.1 99.9 83.4 At2g31370 817695 bZIP transcription factor (POSF21) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVA O.I. C.G. H.G.
91.8 99.9 58.1 At3g59030 825072 TT12 (TRANSPARENT TESTA 12) Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds. O.I. C.G. H.G.
90.6 99.9 158.4 At5g19900 832112 PRLI-interacting factor, putative F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA O.I. C.G. H.G.
90.6 99.9 123.6 At1g62990 842602 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7) Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46. O.I. C.G. H.G.
90.4 99.9 36.9 At5g28910 833014 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO O.I. C.G. H.G.
90.0 99.9 576.7 At2g07727 815400 cytochrome b (MTCYB) (COB) (CYTB) F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA O.I. C.G. H.G.
90.0 99.9 65.6 At5g45420 834578 myb family transcription factor F:transcription factor activity, DNA binding;P:unknown;C:endoplasmic reticulum, plasma membrane;MPOB O.I. C.G. H.G.
89.5 99.9 184.2 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
87.7 99.9 64.6 At3g16170 820862 acyl-activating enzyme 13 (AAE13) F:catalytic activity, AMP binding;P:metabolic process;C:membrane;BOFMPAV O.I. C.G. H.G.
85.8 99.9 93.4 At2g35620 818130 FEI2 (FEI 2) Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. O.I. C.G. H.G.
84.7 99.9 76.3 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
84.5 99.9 97.8 At1g03970 839356 GBF4 encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers. O.I. C.G. H.G.
83.2 99.9 13.6 At5g16790 831542 - F:unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
82.8 99.9 57.9 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
82.0 99.9 68.8 At5g23570 832422 SGS3 (SUPPRESSOR OF GENE SILENCING 3) Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway. O.I. C.G. H.G.
81.2 99.9 28.4 At5g18610 831979 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
81.0 99.9 18.6 At2g32790 817840 ubiquitin-conjugating enzyme, putative F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPV O.I. C.G. H.G.
80.3 99.9 68.9 At5g24910 832560 CYP714A1 member of CYP714A O.I. C.G. H.G.
79.7 99.9 218.6 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. O.I. C.G. H.G.
78.9 99.9 35.9 At3g53350 824503 myosin heavy chain-related F:unknown;P:biological_process unknown;C:nucleus;MOBFPAV O.I. C.G. H.G.
78.7 99.9 99.1 At5g56300 835729 GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2) A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development. O.I. C.G. H.G.
78.1 99.9 143.4 At5g45190 834555 cyclin family protein Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV). O.I. C.G. H.G.
78.0 99.9 37.4 At3g04160 819571 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB O.I. C.G. H.G.
77.5 99.9 21.6 At1g19190 838502 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAV O.I. C.G. H.G.
76.7 99.9 167.9 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1151.1	100.0	178.0	At4g03930	825703	enzyme inhibitor/ pectinesterase	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	C.G.	H.G.
980.1	100.0	907.7	At3g23450	3768908	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	O.I.	C.G.	H.G.
930.5	100.0	319.7	At3g07980	819989	MAPKKK6	MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential.	O.I.	C.G.	H.G.
695.9	100.0	171.9	At3g21500	821704	1-deoxy-D-xylulose-5-phosphate synthase	Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.	O.I.	C.G.	H.G.
685.6	100.0	998.8	At4g15750	827253	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
616.2	100.0	113.0	At1g20550	838643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
586.1	100.0	533.4	At5g47350	834782	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
536.9	100.0	150.0	At1g49800	841403	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
502.5	100.0	242.4	At3g58780	825047	SHP1 (SHATTERPROOF 1)	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	O.I.	C.G.	H.G.
462.7	100.0	91.9	At3g13540	820556	ATMYB5 (MYB DOMAIN PROTEIN 5)	Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).	O.I.	C.G.	H.G.
442.9	100.0	42.5	At2g45840	819192	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBOV	O.I.	C.G.	H.G.
423.4	100.0	463.1	At1g30530	839933	UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1)	The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin	O.I.	C.G.	H.G.
417.8	100.0	179.4	At1g11590	837702	pectin methylesterase, putative	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
385.9	100.0	88.2	At4g19380	827679	alcohol oxidase-related	F:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:unknown;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
328.5	100.0	564.2	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	O.I.	C.G.	H.G.
315.1	100.0	1178.2	At4g12960	826908	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
299.3	100.0	519.4	At2g38900	818474	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
291.2	100.0	931.7	At2g07671	815343	H+-transporting two-sector ATPase, C subunit family protein	F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP	O.I.	C.G.	H.G.
274.1	100.0	208.1	At3g49270	824088	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
262.7	100.0	232.4	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
249.9	100.0	53.2	At4g09820	826571	TT8 (TRANSPARENT TESTA 8)	TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.	O.I.	C.G.	H.G.
246.4	100.0	170.8	At1g26930	839583	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:peroxisome;MPOBVFA	O.I.	C.G.	H.G.
245.2	100.0	115.0	At1g71180	843458	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	F:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
234.2	100.0	72.1	At5g13670	831212	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
230.0	100.0	72.7	At1g17260	838297	AHA10 (Autoinhibited H(+)-ATPase isoform 10)	belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process	O.I.	C.G.	H.G.
217.4	100.0	196.8	At1g24540	839069	CYP86C1	member of CYP86C	O.I.	C.G.	H.G.
215.8	100.0	81.6	At4g32170	829349	CYP96A2	member of CYP96A	O.I.	C.G.	H.G.
214.9	100.0	106.3	At3g49050	824066	lipase class 3 family protein / calmodulin-binding heat-shock protein, putative	F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB	O.I.	C.G.	H.G.
204.6	100.0	44.2	At2g37260	818303	TTG2 (TRANSPARENT TESTA GLABRA 2)	Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.	O.I.	C.G.	H.G.
201.8	100.0	129.6	At3g24480	822038	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA	O.I.	C.G.	H.G.
177.8	100.0	55.6	At2g34200	817981	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO	O.I.	C.G.	H.G.
174.4	100.0	69.4	At5g35550	833520	TT2 (TRANSPARENT TESTA 2)	TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
162.7	99.9	101.3	At5g14130	831263	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
161.0	99.9	288.1	At3g29075	822552	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
155.8	99.9	41.5	At1g66460	842964	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
155.2	99.9	61.6	At5g44700	834499	GSO2 (GASSHO 2)	Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.	O.I.	C.G.	H.G.
153.8	99.9	98.5	At5g06350	830523	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
153.1	99.9	423.9	At5g42800	834291	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.	O.I.	C.G.	H.G.
150.7	99.9	344.6	At2g07711	3768480	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
145.1	99.9	228.7	At1g06550	837166	enoyl-CoA hydratase/isomerase family protein	F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
142.3	99.9	270.6	At5g49180	834977	pectinesterase family protein	Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.	O.I.	C.G.	H.G.
142.0	99.9	79.7	At1g26210	839162	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
140.7	99.9	39.7	At5g55320	835625	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:unknown;C:unknown;BPOF	O.I.	C.G.	H.G.
137.4	99.9	212.9	At3g05600	819726	epoxide hydrolase, putative	F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
136.6	99.9	288.6	At3g50690	824233	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
133.9	99.9	86.9	At1g79110	844252	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF	O.I.	C.G.	H.G.
128.1	99.9	133.3	At5g23890	832454	-	F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV	O.I.	C.G.	H.G.
127.4	99.9	57.9	At4g17480	827459	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
126.6	99.9	207.1	At1g28420	839740	HB-1 (homeobox-1)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
125.1	99.9	213.0	At5g60030	836125	unknown protein	F:unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
124.0	99.9	382.0	At1g47970	841215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
123.9	99.9	64.1	At1g52500	841681	ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1)	Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1.	O.I.	C.G.	H.G.
120.1	99.9	88.8	At4g00270	827164	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM	O.I.	C.G.	H.G.
119.5	99.9	124.5	At5g51950	835270	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
118.7	99.9	43.7	At3g09710	820128	IQD1 (IQ-DOMAIN 1)	Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue.	O.I.	C.G.	H.G.
116.4	99.9	212.4	At1g65440	842855	GTB1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.	O.I.	C.G.	H.G.
114.6	99.9	76.9	At1g09790	837508	COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
112.0	99.9	392.0	At2g07698	815374	ATP synthase alpha chain, mitochondrial, putative	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) binding;P:proton transport, ATP metabolic process, ATP synthesis coupled proton transport;C:in 7 components;BOPMAF	O.I.	C.G.	H.G.
109.4	99.9	125.6	At3g11030	820274	unknown protein	F:unknown;P:unknown;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
108.5	99.9	1413.8	At3g08770	820024	LTP6	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
106.0	99.9	44.2	At1g02940	839479	GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
105.9	99.9	37.0	At1g77520	844088	O-methyltransferase family 2 protein	F:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOM	O.I.	C.G.	H.G.
105.7	99.9	96.5	At5g44080	834431	bZIP transcription factor family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFV	O.I.	C.G.	H.G.
105.5	99.9	197.4	At3g20520	821598	SVL3 (SHV3-LIKE 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM	O.I.	C.G.	H.G.
103.0	99.9	40.2	At1g09440	837467	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
102.7	99.9	103.4	At3g20100	821553	CYP705A19	member of CYP705A	O.I.	C.G.	H.G.
102.7	99.9	34.8	At3g49900	824152	BTB/POZ domain-containing protein	F:protein binding;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
98.0	99.9	72.8	At2g42040	818804	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
97.7	99.9	180.7	At1g44810	841045	transcription regulator	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
97.5	99.9	235.3	At1g15200	838086	protein-protein interaction regulator family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
96.6	99.9	78.6	At3g46770	823830	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
96.3	99.9	99.1	At1g12330	837787	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;PFOM	O.I.	C.G.	H.G.
94.3	99.9	141.3	At2g40650	818660	pre-mRNA splicing factor PRP38 family protein	F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA	O.I.	C.G.	H.G.
94.3	99.9	51.8	At2g23690	816900	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
94.2	99.9	82.4	At1g16390	838209	ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:unknown;C:membrane;BMFPOA	O.I.	C.G.	H.G.
93.1	99.9	83.4	At2g31370	817695	bZIP transcription factor (POSF21)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVA	O.I.	C.G.	H.G.
91.8	99.9	58.1	At3g59030	825072	TT12 (TRANSPARENT TESTA 12)	Encodes a proton antiporter. Involved in the transportation of proanthocyanidin precursors into the vacuole. In vitro transport experiments showed that cyanidin-3-O-glucoside (anthocyanin) was an effective substrate, whereas the proanthocyanidin precursor epicatechin was not transported. However catechin-3-O-glucoside inhibited anthocyanin transport in a dose-dependent manner suggesting that glycosylated epicatechin is the in vivo substrate. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds.	O.I.	C.G.	H.G.
90.6	99.9	158.4	At5g19900	832112	PRLI-interacting factor, putative	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA	O.I.	C.G.	H.G.
90.6	99.9	123.6	At1g62990	842602	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.	O.I.	C.G.	H.G.
90.4	99.9	36.9	At5g28910	833014	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO	O.I.	C.G.	H.G.
90.0	99.9	576.7	At2g07727	815400	cytochrome b (MTCYB) (COB) (CYTB)	F:electron carrier activity, oxidoreductase activity;P:respiratory electron transport chain;C:membrane;MOBPFA	O.I.	C.G.	H.G.
90.0	99.9	65.6	At5g45420	834578	myb family transcription factor	F:transcription factor activity, DNA binding;P:unknown;C:endoplasmic reticulum, plasma membrane;MPOB	O.I.	C.G.	H.G.
89.5	99.9	184.2	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
87.7	99.9	64.6	At3g16170	820862	acyl-activating enzyme 13 (AAE13)	F:catalytic activity, AMP binding;P:metabolic process;C:membrane;BOFMPAV	O.I.	C.G.	H.G.
85.8	99.9	93.4	At2g35620	818130	FEI2 (FEI 2)	Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots.	O.I.	C.G.	H.G.
84.7	99.9	76.3	At5g52280	835304	protein transport protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
84.5	99.9	97.8	At1g03970	839356	GBF4	encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers.	O.I.	C.G.	H.G.
83.2	99.9	13.6	At5g16790	831542	-	F:unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
82.8	99.9	57.9	At5g16950	831558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
82.0	99.9	68.8	At5g23570	832422	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.	O.I.	C.G.	H.G.
81.2	99.9	28.4	At5g18610	831979	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
81.0	99.9	18.6	At2g32790	817840	ubiquitin-conjugating enzyme, putative	F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, protein modification process, post-translational protein modification;C:unknown;MFOPV	O.I.	C.G.	H.G.
80.3	99.9	68.9	At5g24910	832560	CYP714A1	member of CYP714A	O.I.	C.G.	H.G.
79.7	99.9	218.6	At3g20210	821565	DELTA-VPE	Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.	O.I.	C.G.	H.G.
78.9	99.9	35.9	At3g53350	824503	myosin heavy chain-related	F:unknown;P:biological_process unknown;C:nucleus;MOBFPAV	O.I.	C.G.	H.G.
78.7	99.9	99.1	At5g56300	835729	GAMT2 (GIBBERELLIC ACID METHYLTRANSFERASE 2)	A member of the Arabidopsis SABATH methyltransferase gene family. Encodes GAMT2, a methyltransferase that uses S-adenosine-L-methionine (SAM) as a methyl donor to methylate the carboxyl group of GAs, resulting in the methyl esters of GAs (MeGAs). Expressed most highly in the siliques during seed development.	O.I.	C.G.	H.G.
78.1	99.9	143.4	At5g45190	834555	cyclin family protein	Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).	O.I.	C.G.	H.G.
78.0	99.9	37.4	At3g04160	819571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB	O.I.	C.G.	H.G.
77.5	99.9	21.6	At1g19190	838502	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPMFAV	O.I.	C.G.	H.G.
76.7	99.9	167.9	At3g02760	820930	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP	O.I.	C.G.	H.G.

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GSM ID	GSM284397
Assay name	Arabidopsis GGSc1
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284397 Assay name Arabidopsis GGSc1 GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284397

Assay name Arabidopsis GGSc1

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.