CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284396

Assay name Arabidopsis GPSc2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1896.2 100.0 232.9 At1g73000 843631 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
1677.4 100.0 481.0 At1g20680 838656 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POBM O.I. C.G. H.G.
1638.4 100.0 134.6 At3g11870 820360 protein kinase-related F:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVA O.I. C.G. H.G.
1563.4 100.0 325.6 At4g22400 828335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1557.3 100.0 790.5 At3g10590 820227 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM O.I. C.G. H.G.
1459.1 100.0 351.6 At1g31290 840017 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. C.G. H.G.
1455.0 100.0 388.5 At4g29640 829085 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO O.I. C.G. H.G.
1296.1 100.0 958.8 At1g12180 837771 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1173.5 100.0 480.2 At1g61090 842401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1120.8 100.0 403.5 At4g22050 828294 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOP O.I. C.G. H.G.
1058.5 100.0 214.7 At3g21840 821738 ASK7 (ARABIDOPSIS SKP1-LIKE 7) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV O.I. C.G. H.G.
978.6 100.0 152.6 At1g51000 841522 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
976.9 100.0 120.3 At4g29570 829078 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO O.I. C.G. H.G.
970.1 100.0 139.3 At4g29650 829086 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO O.I. C.G. H.G.
900.9 100.0 177.8 At3g21830 821737 ASK8 (ARABIDOPSIS SKP1-LIKE 8) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
880.2 100.0 90.4 At2g33350 817898 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA O.I. C.G. H.G.
839.5 100.0 131.7 At3g54390 824605 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBFOM O.I. C.G. H.G.
777.3 100.0 119.9 At5g66660 836798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
748.7 100.0 85.5 At4g29620 829083 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
709.0 100.0 114.2 At1g51300 841553 acyl-protein thioesterase-related F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBO O.I. C.G. H.G.
704.8 100.0 477.3 At3g13630 820567 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
639.4 100.0 43.4 At4g29630 829084 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
629.6 100.0 66.4 At3g21860 821740 ASK10 (ARABIDOPSIS SKP1-LIKE 10) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV O.I. C.G. H.G.
572.2 100.0 125.7 At5g35550 833520 TT2 (TRANSPARENT TESTA 2) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
565.7 100.0 468.3 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. O.I. C.G. H.G.
557.0 100.0 187.4 At5g06350 830523 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
534.5 100.0 113.7 At5g56510 835752 APUM12 (ARABIDOPSIS PUMILIO 12) F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
527.5 100.0 521.6 At3g29075 822552 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
512.3 100.0 704.5 At2g22080 816743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA O.I. C.G. H.G.
511.1 100.0 64.3 At4g02670 828206 AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF O.I. C.G. H.G.
505.1 100.0 75.2 At1g63960 842699 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
499.4 100.0 103.7 At3g05170 819681 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA O.I. C.G. H.G.
468.4 100.0 138.4 At2g41550 818753 transcription termination factor F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
464.8 100.0 108.6 At5g40970 834099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
456.9 100.0 98.2 At1g80810 844420 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
437.8 100.0 210.3 At1g64060 842710 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. O.I. C.G. H.G.
419.3 100.0 129.6 At5g18090 831636 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
406.2 100.0 310.6 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules O.I. C.G. H.G.
391.4 100.0 207.3 At3g07980 819989 MAPKKK6 MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential. O.I. C.G. H.G.
388.6 100.0 70.4 At1g24010 839013 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
388.3 100.0 255.9 At1g62990 842602 KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7) Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46. O.I. C.G. H.G.
384.7 100.0 203.9 At5g24580 832529 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
348.8 100.0 267.8 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). O.I. C.G. H.G.
346.0 100.0 137.4 At3g14780 820706 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV O.I. C.G. H.G.
326.9 100.0 332.8 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA O.I. C.G. H.G.
309.6 100.0 35.6 At4g29600 829081 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
306.9 100.0 67.2 At1g48180 841238 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
305.6 100.0 95.1 At5g40140 834011 armadillo/beta-catenin repeat family protein / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex, chloroplast;PMFOB O.I. C.G. H.G.
299.1 100.0 167.3 At4g40010 830162 SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. O.I. C.G. H.G.
296.0 100.0 139.4 At4g00270 827164 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM O.I. C.G. H.G.
289.8 100.0 477.8 At2g07711 3768480 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
289.8 100.0 274.3 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
283.4 100.0 265.9 At3g04280 819583 ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators. O.I. C.G. H.G.
270.1 100.0 41.9 At5g46300 834673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMAP O.I. C.G. H.G.
269.7 100.0 266.4 At5g45190 834555 cyclin family protein Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV). O.I. C.G. H.G.
258.3 100.0 130.3 At1g76820 844016 GTP binding / GTPase F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
251.6 100.0 230.7 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA O.I. C.G. H.G.
249.6 100.0 152.4 At4g36920 829845 AP2 (APETALA 2) Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner. O.I. C.G. H.G.
249.3 100.0 33.0 At5g06070 830494 RBE (RABBIT EARS) Isolated as a mutation defective in petal development with specific effects on adaxial petals which are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus. O.I. C.G. H.G.
248.0 100.0 34.7 At1g05490 837051 chr31 (chromatin remodeling 31) F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
241.4 100.0 112.7 At3g49050 824066 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB O.I. C.G. H.G.
231.7 100.0 65.2 At1g28520 839752 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
226.3 100.0 124.7 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
226.3 100.0 72.0 At1g77660 844102 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF O.I. C.G. H.G.
225.9 100.0 123.7 At3g50550 824219 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
221.4 100.0 271.9 At1g44810 841045 transcription regulator F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
220.6 100.0 54.0 At1g63020 842605 NRPD1A (NUCLEAR RNA POLYMERASE D 1A) Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. O.I. C.G. H.G.
216.3 100.0 46.3 At5g18610 831979 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
215.3 100.0 131.9 At4g01180 828058 XH/XS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAV O.I. C.G. H.G.
210.9 100.0 161.1 At5g44180 834441 homeobox transcription factor, putative F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBFPVA O.I. C.G. H.G.
210.7 100.0 358.6 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
207.3 100.0 152.6 At1g01040 839574 DCL1 (DICER-LIKE 1) Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. O.I. C.G. H.G.
203.8 100.0 112.0 At1g24000 839012 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
201.6 100.0 43.9 At2g37260 818303 TTG2 (TRANSPARENT TESTA GLABRA 2) Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent. O.I. C.G. H.G.
190.5 100.0 268.7 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
188.4 100.0 749.4 At2g07671 815343 H+-transporting two-sector ATPase, C subunit family protein F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP O.I. C.G. H.G.
186.3 100.0 663.8 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
184.4 100.0 64.2 At5g48650 834922 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA O.I. C.G. H.G.
177.8 100.0 255.5 At2g29210 817470 splicing factor PWI domain-containing protein F:unknown;P:RNA splicing;C:unknown;MOFBPVA O.I. C.G. H.G.
174.3 100.0 130.3 At1g61350 842429 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
172.3 100.0 146.5 At5g25060 832577 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA O.I. C.G. H.G.
166.2 100.0 357.9 At1g75390 843875 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44) F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOM O.I. C.G. H.G.
162.8 99.9 99.5 At1g44910 841057 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
159.5 99.9 146.4 At3g15790 820822 MBD11 Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. O.I. C.G. H.G.
157.3 99.9 857.9 At3g56360 824803 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
157.2 99.9 72.2 At1g52500 841681 ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1. O.I. C.G. H.G.
154.7 99.9 79.1 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
151.8 99.9 293.7 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
148.2 99.9 111.0 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA O.I. C.G. H.G.
148.0 99.9 131.5 At3g58780 825047 SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. O.I. C.G. H.G.
147.3 99.9 44.2 At5g47920 834843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
144.8 99.9 46.1 At4g02710 828199 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
143.0 99.9 127.3 At5g25220 832593 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia O.I. C.G. H.G.
142.1 99.9 147.9 At4g25020 828605 KOW domain-containing protein / D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
141.6 99.9 33.0 At1g63950 842698 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P O.I. C.G. H.G.
140.0 99.9 540.9 At5g02490 831856 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
138.8 99.9 101.8 At2g31370 817695 bZIP transcription factor (POSF21) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVA O.I. C.G. H.G.
138.2 99.9 41.5 At4g16790 827385 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA O.I. C.G. H.G.
134.2 99.9 24.2 At2g44000 819005 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
133.9 99.9 30.0 At1g03300 838627 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1896.2	100.0	232.9	At1g73000	843631	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
1677.4	100.0	481.0	At1g20680	838656	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POBM	O.I.	C.G.	H.G.
1638.4	100.0	134.6	At3g11870	820360	protein kinase-related	F:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVA	O.I.	C.G.	H.G.
1563.4	100.0	325.6	At4g22400	828335	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1557.3	100.0	790.5	At3g10590	820227	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM	O.I.	C.G.	H.G.
1459.1	100.0	351.6	At1g31290	840017	PAZ domain-containing protein / piwi domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	C.G.	H.G.
1455.0	100.0	388.5	At4g29640	829085	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
1296.1	100.0	958.8	At1g12180	837771	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1173.5	100.0	480.2	At1g61090	842401	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1120.8	100.0	403.5	At4g22050	828294	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;MFOP	O.I.	C.G.	H.G.
1058.5	100.0	214.7	At3g21840	821738	ASK7 (ARABIDOPSIS SKP1-LIKE 7)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV	O.I.	C.G.	H.G.
978.6	100.0	152.6	At1g51000	841522	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
976.9	100.0	120.3	At4g29570	829078	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
970.1	100.0	139.3	At4g29650	829086	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
900.9	100.0	177.8	At3g21830	821737	ASK8 (ARABIDOPSIS SKP1-LIKE 8)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
880.2	100.0	90.4	At2g33350	817898	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA	O.I.	C.G.	H.G.
839.5	100.0	131.7	At3g54390	824605	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBFOM	O.I.	C.G.	H.G.
777.3	100.0	119.9	At5g66660	836798	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
748.7	100.0	85.5	At4g29620	829083	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
709.0	100.0	114.2	At1g51300	841553	acyl-protein thioesterase-related	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPBO	O.I.	C.G.	H.G.
704.8	100.0	477.3	At3g13630	820567	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
639.4	100.0	43.4	At4g29630	829084	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
629.6	100.0	66.4	At3g21860	821740	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	O.I.	C.G.	H.G.
572.2	100.0	125.7	At5g35550	833520	TT2 (TRANSPARENT TESTA 2)	TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
565.7	100.0	468.3	At1g65440	842855	GTB1	Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.	O.I.	C.G.	H.G.
557.0	100.0	187.4	At5g06350	830523	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
534.5	100.0	113.7	At5g56510	835752	APUM12 (ARABIDOPSIS PUMILIO 12)	F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
527.5	100.0	521.6	At3g29075	822552	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
512.3	100.0	704.5	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	O.I.	C.G.	H.G.
511.1	100.0	64.3	At4g02670	828206	AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF	O.I.	C.G.	H.G.
505.1	100.0	75.2	At1g63960	842699	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
499.4	100.0	103.7	At3g05170	819681	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA	O.I.	C.G.	H.G.
468.4	100.0	138.4	At2g41550	818753	transcription termination factor	F:transcription termination factor activity;P:transcription termination;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
464.8	100.0	108.6	At5g40970	834099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
456.9	100.0	98.2	At1g80810	844420	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
437.8	100.0	210.3	At1g64060	842710	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.	O.I.	C.G.	H.G.
419.3	100.0	129.6	At5g18090	831636	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
406.2	100.0	310.6	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	O.I.	C.G.	H.G.
391.4	100.0	207.3	At3g07980	819989	MAPKKK6	MAP3K epsilon protein kinase 2 is functionally redundant with MAP3Ke1. Required for pollen development but not essential.	O.I.	C.G.	H.G.
388.6	100.0	70.4	At1g24010	839013	-	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
388.3	100.0	255.9	At1g62990	842602	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.	O.I.	C.G.	H.G.
384.7	100.0	203.9	At5g24580	832529	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
348.8	100.0	267.8	At2g42830	818883	SHP2 (SHATTERPROOF 2)	AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG).	O.I.	C.G.	H.G.
346.0	100.0	137.4	At3g14780	820706	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV	O.I.	C.G.	H.G.
326.9	100.0	332.8	At1g28420	839740	HB-1 (homeobox-1)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
309.6	100.0	35.6	At4g29600	829081	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
306.9	100.0	67.2	At1g48180	841238	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
305.6	100.0	95.1	At5g40140	834011	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex, chloroplast;PMFOB	O.I.	C.G.	H.G.
299.1	100.0	167.3	At4g40010	830162	SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	O.I.	C.G.	H.G.
296.0	100.0	139.4	At4g00270	827164	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM	O.I.	C.G.	H.G.
289.8	100.0	477.8	At2g07711	3768480	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
289.8	100.0	274.3	At1g15940	838164	binding	F:binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
283.4	100.0	265.9	At3g04280	819583	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. It acts as a phosphohistidine phosphatase when tested with phospho-AHP5 in vitro suggesting that it might be involved in a two-component phosphorelay. Expression of ARR22 transcripts appears to be localized to the chalaza and to be induced by wounding. Ectopic expression of ARR in other parts of the plant leads to reduced cytokinin-related responses and impaired root, shoot, and flower development. Overexpression of wild-type ARR22 in an arr22 mutant background causes variable defects in plant growth and fertility. But, in the same ar22 background, over-expression of versions of ARR22 that should act as dominant-negative or constitutively active proteins, based on mutations to the conserved Asp residue, do not show any phenotypic abnormalities, raising the possibility that these may not act as canonical response regulators.	O.I.	C.G.	H.G.
270.1	100.0	41.9	At5g46300	834673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMAP	O.I.	C.G.	H.G.
269.7	100.0	266.4	At5g45190	834555	cyclin family protein	Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).	O.I.	C.G.	H.G.
258.3	100.0	130.3	At1g76820	844016	GTP binding / GTPase	F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
251.6	100.0	230.7	At2g40650	818660	pre-mRNA splicing factor PRP38 family protein	F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA	O.I.	C.G.	H.G.
249.6	100.0	152.4	At4g36920	829845	AP2 (APETALA 2)	Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner.	O.I.	C.G.	H.G.
249.3	100.0	33.0	At5g06070	830494	RBE (RABBIT EARS)	Isolated as a mutation defective in petal development with specific effects on adaxial petals which are filamentous or absent. Encodes a Superman (SUP) like protein with zinc finger motifs. Transcript is detected in petal primordia and protein is localized to the nucleus.	O.I.	C.G.	H.G.
248.0	100.0	34.7	At1g05490	837051	chr31 (chromatin remodeling 31)	F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
241.4	100.0	112.7	At3g49050	824066	lipase class 3 family protein / calmodulin-binding heat-shock protein, putative	F:triacylglycerol lipase activity, calmodulin binding;P:lipid catabolic process, lipid metabolic process;C:endomembrane system;MPOFB	O.I.	C.G.	H.G.
231.7	100.0	65.2	At1g28520	839752	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	F:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
226.3	100.0	124.7	At5g52280	835304	protein transport protein-related	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
226.3	100.0	72.0	At1g77660	844102	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF	O.I.	C.G.	H.G.
225.9	100.0	123.7	At3g50550	824219	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
221.4	100.0	271.9	At1g44810	841045	transcription regulator	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
220.6	100.0	54.0	At1g63020	842605	NRPD1A (NUCLEAR RNA POLYMERASE D 1A)	Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing.	O.I.	C.G.	H.G.
216.3	100.0	46.3	At5g18610	831979	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
215.3	100.0	131.9	At4g01180	828058	XH/XS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAV	O.I.	C.G.	H.G.
210.9	100.0	161.1	At5g44180	834441	homeobox transcription factor, putative	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBFPVA	O.I.	C.G.	H.G.
210.7	100.0	358.6	At3g50690	824233	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
207.3	100.0	152.6	At1g01040	839574	DCL1 (DICER-LIKE 1)	Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.	O.I.	C.G.	H.G.
203.8	100.0	112.0	At1g24000	839012	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
201.6	100.0	43.9	At2g37260	818303	TTG2 (TRANSPARENT TESTA GLABRA 2)	Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent.	O.I.	C.G.	H.G.
190.5	100.0	268.7	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
188.4	100.0	749.4	At2g07671	815343	H+-transporting two-sector ATPase, C subunit family protein	F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP	O.I.	C.G.	H.G.
186.3	100.0	663.8	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
184.4	100.0	64.2	At5g48650	834922	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA	O.I.	C.G.	H.G.
177.8	100.0	255.5	At2g29210	817470	splicing factor PWI domain-containing protein	F:unknown;P:RNA splicing;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
174.3	100.0	130.3	At1g61350	842429	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
172.3	100.0	146.5	At5g25060	832577	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
166.2	100.0	357.9	At1g75390	843875	AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44)	F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOM	O.I.	C.G.	H.G.
162.8	99.9	99.5	At1g44910	841057	protein binding	F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
159.5	99.9	146.4	At3g15790	820822	MBD11	Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.	O.I.	C.G.	H.G.
157.3	99.9	857.9	At3g56360	824803	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
157.2	99.9	72.2	At1g52500	841681	ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1)	Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1.	O.I.	C.G.	H.G.
154.7	99.9	79.1	At5g16950	831558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
151.8	99.9	293.7	At1g15200	838086	protein-protein interaction regulator family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
148.2	99.9	111.0	At3g24480	822038	leucine-rich repeat family protein / extensin family protein	F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA	O.I.	C.G.	H.G.
148.0	99.9	131.5	At3g58780	825047	SHP1 (SHATTERPROOF 1)	One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells.	O.I.	C.G.	H.G.
147.3	99.9	44.2	At5g47920	834843	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
144.8	99.9	46.1	At4g02710	828199	kinase interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
143.0	99.9	127.3	At5g25220	832593	KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3)	A member of class II knotted1-like homeobox gene family (together with KNAT4 and KNAT5). Expressed in: hypocotyl-root boundary, anther-filament junction in flowers, ovule-funiculus and peduncle-silique boundaries, petioles and root. Light-regulated expression with differential response to red/far-red light. KNAT3 promoter activity showed cell-type specific pattern along longitudinal root axis, restricted mainly to the differentiation zone of the root, namely in the cortex and pericycle. Not detected in lateral root primordia	O.I.	C.G.	H.G.
142.1	99.9	147.9	At4g25020	828605	KOW domain-containing protein / D111/G-patch domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
141.6	99.9	33.0	At1g63950	842698	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P	O.I.	C.G.	H.G.
140.0	99.9	540.9	At5g02490	831856	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
138.8	99.9	101.8	At2g31370	817695	bZIP transcription factor (POSF21)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVA	O.I.	C.G.	H.G.
138.2	99.9	41.5	At4g16790	827385	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
134.2	99.9	24.2	At2g44000	819005	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
133.9	99.9	30.0	At1g03300	838627	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBA	O.I.	C.G.	H.G.

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GSM ID	GSM284396
Assay name	Arabidopsis GPSc2
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284396 Assay name Arabidopsis GPSc2 GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284396

Assay name Arabidopsis GPSc2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.