CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284393

Assay name Arabidopsis GCE2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2353.1 100.0 987.4 At5g44830 834513 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA O.I. C.G. H.G.
1874.3 100.0 315.8 At1g72000 843531 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
1688.6 100.0 832.5 At1g07690 837282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
1622.4 100.0 190.9 At1g20730 838663 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMV O.I. C.G. H.G.
1471.0 100.0 393.8 At3g13370 820537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
1444.8 100.0 1329.4 At2g39640 818547 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
1391.0 100.0 591.7 At2g23990 816933 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMA O.I. C.G. H.G.
1325.3 100.0 197.5 At5g03920 830271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1205.4 100.0 288.3 At1g19950 838584 HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
1197.4 100.0 153.3 At5g55590 835653 QRT1 (QUARTET 1) Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. O.I. C.G. H.G.
1174.1 100.0 224.4 At3g01880 821296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBO O.I. C.G. H.G.
1114.2 100.0 159.4 At5g52140 835290 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVB O.I. C.G. H.G.
1096.6 100.0 443.6 At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
1070.3 100.0 111.1 At4g34330 829583 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
1061.6 100.0 259.4 At4g37950 829951 lyase F:lyase activity;P:biological_process unknown;C:unknown;PFB O.I. C.G. H.G.
1059.4 100.0 449.7 At4g27890 828902 nuclear movement family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
1002.4 100.0 433.3 At1g80330 844373 GA3OX4 (GIBBERELLIN 3-OXIDASE 4) Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29. O.I. C.G. H.G.
999.0 100.0 257.7 At4g25610 828666 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPV O.I. C.G. H.G.
997.9 100.0 217.8 At1g72580 843590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
988.4 100.0 185.9 At4g24650 828567 ATIPT4 AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds O.I. C.G. H.G.
984.3 100.0 616.8 At2g42100 818810 actin, putative F:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABV O.I. C.G. H.G.
983.7 100.0 204.4 At3g25420 822126 scpl21 (serine carboxypeptidase-like 21) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
972.0 100.0 156.1 At4g15040 827163 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAM O.I. C.G. H.G.
964.8 100.0 246.0 At1g76290 843962 AMP-dependent synthetase and ligase family protein F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
957.8 100.0 273.7 At3g09140 820068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
945.4 100.0 386.7 At2g26870 817228 phosphoesterase family protein F:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOA O.I. C.G. H.G.
926.1 100.0 609.9 At5g10230 830887 ANNAT7 (ANNEXIN ARABIDOPSIS 7) Encodes a calcium-binding protein annexin (AnnAt7). O.I. C.G. H.G.
925.0 100.0 58.4 At3g66656 819848 AGL91 F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
921.4 100.0 58.2 At2g31780 817735 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
856.8 100.0 167.6 At4g18870 827621 heat shock transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
850.7 100.0 270.5 At3g48950 824056 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
840.0 100.0 333.8 At1g02980 839415 CUL2 (CULLIN 2) encodes an Arabidopsis cullin O.I. C.G. H.G.
809.8 100.0 305.1 At5g65890 836718 ACR1 (ACT Domain Repeat 1) Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques. O.I. C.G. H.G.
798.4 100.0 154.8 At5g09490 830808 40S ribosomal protein S15 (RPS15B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF O.I. C.G. H.G.
784.7 100.0 113.5 At5g41450 834146 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
773.2 100.0 378.5 At1g67800 843106 copine-related F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF O.I. C.G. H.G.
768.1 100.0 248.9 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. O.I. C.G. H.G.
764.9 100.0 206.7 At5g39560 833952 - F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAF O.I. C.G. H.G.
745.6 100.0 162.9 At2g27700 817316 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAP O.I. C.G. H.G.
719.9 100.0 99.8 At2g26320 817172 AGL33 (AGAMOUS-LIKE 33) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
717.3 100.0 82.0 At5g05030 830385 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
717.1 100.0 161.0 At3g06180 819792 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PFO O.I. C.G. H.G.
702.0 100.0 185.7 At1g51210 841544 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMOBFV O.I. C.G. H.G.
697.6 100.0 297.9 At4g39000 830055 AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
689.9 100.0 292.0 At4g13080 826922 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
679.8 100.0 223.2 At4g17160 827427 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA O.I. C.G. H.G.
677.3 100.0 157.0 At5g63740 836494 zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
655.3 100.0 93.4 At5g66150 836747 glycosyl hydrolase family 38 protein F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:endomembrane system;MBOPFA O.I. C.G. H.G.
654.9 100.0 210.0 At4g11510 826756 RALFL28 (ralf-like 28) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
628.7 100.0 107.7 At4g36590 829811 MADS-box protein (AGL40) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
627.5 100.0 216.0 At2g03190 814848 ASK16 (ARABIDOPSIS SKP1-LIKE 16) one of SKP1 homologs. Gene is expressed specifically in the silique. O.I. C.G. H.G.
626.1 100.0 390.8 At3g60700 825241 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
625.2 100.0 164.0 At3g49600 824122 UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26) Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1. O.I. C.G. H.G.
625.0 100.0 88.1 At2g34555 818019 ATGA2OX3 (gibberellin 2-oxidase 3) F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM O.I. C.G. H.G.
620.6 100.0 102.8 At1g73560 843690 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
598.2 100.0 133.9 At1g69190 843250 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress. O.I. C.G. H.G.
596.4 100.0 289.1 At4g39955 830156 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:plasma membrane;BOMPAF O.I. C.G. H.G.
579.2 100.0 207.5 At1g16980 838269 ATTPS2 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
577.9 100.0 728.4 At3g03410 821262 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
576.3 100.0 92.9 At1g79370 844275 CYP79C1 member of CYP79C O.I. C.G. H.G.
571.3 100.0 117.5 At1g60985 842390 SCRL6 (SCR-Like 6) Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). O.I. C.G. H.G.
569.8 100.0 30.5 At1g30740 839954 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM O.I. C.G. H.G.
554.0 100.0 90.0 At1g57780 842153 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBAF O.I. C.G. H.G.
549.6 100.0 155.9 At3g27710 822393 zinc finger protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVB O.I. C.G. H.G.
517.8 100.0 75.9 At3g24210 822007 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
517.4 100.0 270.0 At1g20140 838604 ASK4 (ARABIDOPSIS SKP1-LIKE 4) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV O.I. C.G. H.G.
503.6 100.0 129.3 At2g18490 816364 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
501.4 100.0 277.6 At5g27330 832791 - F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAV O.I. C.G. H.G.
497.2 100.0 651.5 At1g65300 842838 AGL38 (AGAMOUS-LIKE 38) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
492.8 100.0 57.9 At4g30120 829135 HMA3 (HEAVY METAL ATPASE 3) encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc O.I. C.G. H.G.
489.7 100.0 49.0 At1g65640 842875 DegP4 (DegP protease 4) Encodes a putative DegP protease. O.I. C.G. H.G.
486.8 100.0 43.3 At5g26250 832694 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
484.3 100.0 524.5 At5g38195 833801 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
472.6 100.0 174.7 At5g10220 830886 ANN6 (ANNEXIN ARABIDOPSIS 6) Encodes a calcium-binding protein annexin (AnnAt6). O.I. C.G. H.G.
469.1 100.0 76.6 At5g65370 836662 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
468.9 100.0 179.7 At2g20160 816536 MEO (MEIDOS) F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
461.1 100.0 59.5 At3g25990 822196 DNA-binding protein GT-1-related F:transcription factor activity;P:regulation of transcription;C:unknown;PM O.I. C.G. H.G.
460.4 100.0 355.4 At3g24280 822016 SMAP2 (small acidic protein 2) F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
460.0 100.0 112.1 At1g70430 843379 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA O.I. C.G. H.G.
454.4 100.0 80.9 At3g05860 819755 MADS-box protein (AGL45) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
452.1 100.0 47.4 At2g31760 817733 zinc finger protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
451.0 100.0 170.1 At1g09510 837476 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
432.2 100.0 168.5 At1g76820 844016 GTP binding / GTPase F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
432.1 100.0 35.3 At5g52480 835324 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
429.9 100.0 200.2 At5g40710 834071 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPOBF O.I. C.G. H.G.
429.9 100.0 38.5 At1g75600 843895 histone H3.2, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO O.I. C.G. H.G.
428.6 100.0 63.9 At3g20030 821542 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
416.5 100.0 147.9 At1g10730 837616 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP O.I. C.G. H.G.
416.1 100.0 266.9 At3g02800 821239 phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBM O.I. C.G. H.G.
415.7 100.0 55.1 At2g26880 817229 AGL41 (AGAMOUS-LIKE 41) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
408.0 100.0 136.7 At2g43670 818969 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
404.4 100.0 58.3 At2g25630 817104 BGLU14 (BETA GLUCOSIDASE 14) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA O.I. C.G. H.G.
400.8 100.0 278.0 At1g15310 838100 ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins O.I. C.G. H.G.
398.2 100.0 109.3 At2g30730 817624 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
392.1 100.0 74.4 At4g32080 829339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
390.0 100.0 70.7 At1g47810 841195 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
388.5 100.0 264.0 At3g03520 821244 phosphoesterase family protein F:hydrolase activity, acting on ester bonds;P:biological_process unknown;C:vacuole, membrane;BFPOA O.I. C.G. H.G.
386.2 100.0 45.5 At1g54640 841906 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
386.1 100.0 80.8 At2g12190 815688 cytochrome P450, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
385.6 100.0 49.1 At3g15490 820788 unknown protein F:unknown;P:biological_process unknown;C:unknown;PFOM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2353.1	100.0	987.4	At5g44830	834513	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA	O.I.	C.G.	H.G.
1874.3	100.0	315.8	At1g72000	843531	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
1688.6	100.0	832.5	At1g07690	837282	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
1622.4	100.0	190.9	At1g20730	838663	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMV	O.I.	C.G.	H.G.
1471.0	100.0	393.8	At3g13370	820537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
1444.8	100.0	1329.4	At2g39640	818547	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
1391.0	100.0	591.7	At2g23990	816933	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMA	O.I.	C.G.	H.G.
1325.3	100.0	197.5	At5g03920	830271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1205.4	100.0	288.3	At1g19950	838584	HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
1197.4	100.0	153.3	At5g55590	835653	QRT1 (QUARTET 1)	Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.	O.I.	C.G.	H.G.
1174.1	100.0	224.4	At3g01880	821296	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBO	O.I.	C.G.	H.G.
1114.2	100.0	159.4	At5g52140	835290	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVB	O.I.	C.G.	H.G.
1096.6	100.0	443.6	At5g17470	831613	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
1070.3	100.0	111.1	At4g34330	829583	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1061.6	100.0	259.4	At4g37950	829951	lyase	F:lyase activity;P:biological_process unknown;C:unknown;PFB	O.I.	C.G.	H.G.
1059.4	100.0	449.7	At4g27890	828902	nuclear movement family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
1002.4	100.0	433.3	At1g80330	844373	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.	O.I.	C.G.	H.G.
999.0	100.0	257.7	At4g25610	828666	zinc finger (C2H2 type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;OMFBPV	O.I.	C.G.	H.G.
997.9	100.0	217.8	At1g72580	843590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
988.4	100.0	185.9	At4g24650	828567	ATIPT4	AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds	O.I.	C.G.	H.G.
984.3	100.0	616.8	At2g42100	818810	actin, putative	F:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABV	O.I.	C.G.	H.G.
983.7	100.0	204.4	At3g25420	822126	scpl21 (serine carboxypeptidase-like 21)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
972.0	100.0	156.1	At4g15040	827163	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAM	O.I.	C.G.	H.G.
964.8	100.0	246.0	At1g76290	843962	AMP-dependent synthetase and ligase family protein	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
957.8	100.0	273.7	At3g09140	820068	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
945.4	100.0	386.7	At2g26870	817228	phosphoesterase family protein	F:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOA	O.I.	C.G.	H.G.
926.1	100.0	609.9	At5g10230	830887	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	Encodes a calcium-binding protein annexin (AnnAt7).	O.I.	C.G.	H.G.
925.0	100.0	58.4	At3g66656	819848	AGL91	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
921.4	100.0	58.2	At2g31780	817735	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
856.8	100.0	167.6	At4g18870	827621	heat shock transcription factor family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
850.7	100.0	270.5	At3g48950	824056	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
840.0	100.0	333.8	At1g02980	839415	CUL2 (CULLIN 2)	encodes an Arabidopsis cullin	O.I.	C.G.	H.G.
809.8	100.0	305.1	At5g65890	836718	ACR1 (ACT Domain Repeat 1)	Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	O.I.	C.G.	H.G.
798.4	100.0	154.8	At5g09490	830808	40S ribosomal protein S15 (RPS15B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
784.7	100.0	113.5	At5g41450	834146	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
773.2	100.0	378.5	At1g67800	843106	copine-related	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF	O.I.	C.G.	H.G.
768.1	100.0	248.9	At5g05260	830408	CYP79A2 (CYTOCHROME P450 79A2)	Encodes cytochrome P450 CYP79A2.	O.I.	C.G.	H.G.
764.9	100.0	206.7	At5g39560	833952	-	F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAF	O.I.	C.G.	H.G.
745.6	100.0	162.9	At2g27700	817316	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAP	O.I.	C.G.	H.G.
719.9	100.0	99.8	At2g26320	817172	AGL33 (AGAMOUS-LIKE 33)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
717.3	100.0	82.0	At5g05030	830385	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
717.1	100.0	161.0	At3g06180	819792	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PFO	O.I.	C.G.	H.G.
702.0	100.0	185.7	At1g51210	841544	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMOBFV	O.I.	C.G.	H.G.
697.6	100.0	297.9	At4g39000	830055	AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
689.9	100.0	292.0	At4g13080	826922	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
679.8	100.0	223.2	At4g17160	827427	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
677.3	100.0	157.0	At5g63740	836494	zinc finger protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
655.3	100.0	93.4	At5g66150	836747	glycosyl hydrolase family 38 protein	F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:endomembrane system;MBOPFA	O.I.	C.G.	H.G.
654.9	100.0	210.0	At4g11510	826756	RALFL28 (ralf-like 28)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
628.7	100.0	107.7	At4g36590	829811	MADS-box protein (AGL40)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
627.5	100.0	216.0	At2g03190	814848	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	one of SKP1 homologs. Gene is expressed specifically in the silique.	O.I.	C.G.	H.G.
626.1	100.0	390.8	At3g60700	825241	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
625.2	100.0	164.0	At3g49600	824122	UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26)	Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.	O.I.	C.G.	H.G.
625.0	100.0	88.1	At2g34555	818019	ATGA2OX3 (gibberellin 2-oxidase 3)	F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
620.6	100.0	102.8	At1g73560	843690	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
598.2	100.0	133.9	At1g69190	843250	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.	O.I.	C.G.	H.G.
596.4	100.0	289.1	At4g39955	830156	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:plasma membrane;BOMPAF	O.I.	C.G.	H.G.
579.2	100.0	207.5	At1g16980	838269	ATTPS2	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
577.9	100.0	728.4	At3g03410	821262	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
576.3	100.0	92.9	At1g79370	844275	CYP79C1	member of CYP79C	O.I.	C.G.	H.G.
571.3	100.0	117.5	At1g60985	842390	SCRL6 (SCR-Like 6)	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	O.I.	C.G.	H.G.
569.8	100.0	30.5	At1g30740	839954	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAM	O.I.	C.G.	H.G.
554.0	100.0	90.0	At1g57780	842153	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBAF	O.I.	C.G.	H.G.
549.6	100.0	155.9	At3g27710	822393	zinc finger protein-related	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVB	O.I.	C.G.	H.G.
517.8	100.0	75.9	At3g24210	822007	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
517.4	100.0	270.0	At1g20140	838604	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV	O.I.	C.G.	H.G.
503.6	100.0	129.3	At2g18490	816364	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
501.4	100.0	277.6	At5g27330	832791	-	F:unknown;P:unknown;C:endoplasmic reticulum;MOBFPAV	O.I.	C.G.	H.G.
497.2	100.0	651.5	At1g65300	842838	AGL38 (AGAMOUS-LIKE 38)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
492.8	100.0	57.9	At4g30120	829135	HMA3 (HEAVY METAL ATPASE 3)	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	O.I.	C.G.	H.G.
489.7	100.0	49.0	At1g65640	842875	DegP4 (DegP protease 4)	Encodes a putative DegP protease.	O.I.	C.G.	H.G.
486.8	100.0	43.3	At5g26250	832694	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
484.3	100.0	524.5	At5g38195	833801	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
472.6	100.0	174.7	At5g10220	830886	ANN6 (ANNEXIN ARABIDOPSIS 6)	Encodes a calcium-binding protein annexin (AnnAt6).	O.I.	C.G.	H.G.
469.1	100.0	76.6	At5g65370	836662	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
468.9	100.0	179.7	At2g20160	816536	MEO (MEIDOS)	F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
461.1	100.0	59.5	At3g25990	822196	DNA-binding protein GT-1-related	F:transcription factor activity;P:regulation of transcription;C:unknown;PM	O.I.	C.G.	H.G.
460.4	100.0	355.4	At3g24280	822016	SMAP2 (small acidic protein 2)	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
460.0	100.0	112.1	At1g70430	843379	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA	O.I.	C.G.	H.G.
454.4	100.0	80.9	At3g05860	819755	MADS-box protein (AGL45)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
452.1	100.0	47.4	At2g31760	817733	zinc finger protein-related	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
451.0	100.0	170.1	At1g09510	837476	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
432.2	100.0	168.5	At1g76820	844016	GTP binding / GTPase	F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
432.1	100.0	35.3	At5g52480	835324	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
429.9	100.0	200.2	At5g40710	834071	zinc finger (C2H2 type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPOBF	O.I.	C.G.	H.G.
429.9	100.0	38.5	At1g75600	843895	histone H3.2, putative	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO	O.I.	C.G.	H.G.
428.6	100.0	63.9	At3g20030	821542	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
416.5	100.0	147.9	At1g10730	837616	clathrin adaptor complexes medium subunit family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP	O.I.	C.G.	H.G.
416.1	100.0	266.9	At3g02800	821239	phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase	F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBM	O.I.	C.G.	H.G.
415.7	100.0	55.1	At2g26880	817229	AGL41 (AGAMOUS-LIKE 41)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
408.0	100.0	136.7	At2g43670	818969	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
404.4	100.0	58.3	At2g25630	817104	BGLU14 (BETA GLUCOSIDASE 14)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
400.8	100.0	278.0	At1g15310	838100	ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins	O.I.	C.G.	H.G.
398.2	100.0	109.3	At2g30730	817624	serine/threonine protein kinase, putative	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
392.1	100.0	74.4	At4g32080	829339	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
390.0	100.0	70.7	At1g47810	841195	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
388.5	100.0	264.0	At3g03520	821244	phosphoesterase family protein	F:hydrolase activity, acting on ester bonds;P:biological_process unknown;C:vacuole, membrane;BFPOA	O.I.	C.G.	H.G.
386.2	100.0	45.5	At1g54640	841906	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
386.1	100.0	80.8	At2g12190	815688	cytochrome P450, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
385.6	100.0	49.1	At3g15490	820788	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PFOM	O.I.	C.G.	H.G.

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GSM ID	GSM284393
Assay name	Arabidopsis GCE2
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284393 Assay name Arabidopsis GCE2 GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284393

Assay name Arabidopsis GCE2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.