CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284392

Assay name Arabidopsis GCE1

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1659.7 100.0 204.0 At4g15040 827163 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAM O.I. C.G. H.G.
1551.8 100.0 232.9 At4g24650 828567 ATIPT4 AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds O.I. C.G. H.G.
1542.9 100.0 174.0 At5g55590 835653 QRT1 (QUARTET 1) Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. O.I. C.G. H.G.
1525.9 100.0 401.1 At3g13370 820537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
1463.9 100.0 775.1 At1g07690 837282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
1420.1 100.0 227.4 At5g63740 836494 zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
1381.7 100.0 223.5 At3g06180 819792 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PFO O.I. C.G. H.G.
1366.6 100.0 200.6 At5g03920 830271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1305.8 100.0 110.7 At5g05030 830385 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
1292.0 100.0 706.7 At2g42100 818810 actin, putative F:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABV O.I. C.G. H.G.
1250.2 100.0 560.9 At2g23990 816933 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMA O.I. C.G. H.G.
1247.9 100.0 145.3 At2g12190 815688 cytochrome P450, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
1237.9 100.0 311.2 At3g09140 820068 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1216.1 100.0 81.3 At1g59800 842273 cullin-related F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MFPO O.I. C.G. H.G.
1175.6 100.0 211.7 At4g14780 827133 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
1168.0 100.0 99.1 At2g25630 817104 BGLU14 (BETA GLUCOSIDASE 14) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA O.I. C.G. H.G.
1164.8 100.0 115.9 At4g34330 829583 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
1164.2 100.0 186.9 At2g30730 817624 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
1101.6 100.0 191.3 At2g18490 816364 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
1096.6 100.0 307.1 At3g48950 824056 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
1091.1 100.0 380.4 At1g02980 839415 CUL2 (CULLIN 2) encodes an Arabidopsis cullin O.I. C.G. H.G.
1090.2 100.0 661.8 At5g10230 830887 ANNAT7 (ANNEXIN ARABIDOPSIS 7) Encodes a calcium-binding protein annexin (AnnAt7). O.I. C.G. H.G.
1061.3 100.0 261.8 At5g10220 830886 ANN6 (ANNEXIN ARABIDOPSIS 6) Encodes a calcium-binding protein annexin (AnnAt6). O.I. C.G. H.G.
1050.8 100.0 114.6 At5g65370 836662 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1047.6 100.0 212.0 At3g01880 821296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBO O.I. C.G. H.G.
1042.5 100.0 70.7 At1g12190 837772 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
1042.3 100.0 192.6 At2g27700 817316 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAP O.I. C.G. H.G.
1038.9 100.0 1127.3 At2g39640 818547 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
1036.8 100.0 277.6 At2g03190 814848 ASK16 (ARABIDOPSIS SKP1-LIKE 16) one of SKP1 homologs. Gene is expressed specifically in the silique. O.I. C.G. H.G.
1030.3 100.0 288.3 At5g05260 830408 CYP79A2 (CYTOCHROME P450 79A2) Encodes cytochrome P450 CYP79A2. O.I. C.G. H.G.
1028.8 100.0 971.9 At3g03410 821262 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
1017.2 100.0 259.0 At5g10660 830930 calmodulin-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
1008.8 100.0 251.5 At1g76290 843962 AMP-dependent synthetase and ligase family protein F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
998.5 100.0 259.3 At4g11510 826756 RALFL28 (ralf-like 28) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. O.I. C.G. H.G.
987.9 100.0 250.2 At4g37950 829951 lyase F:lyase activity;P:biological_process unknown;C:unknown;PFB O.I. C.G. H.G.
985.1 100.0 204.5 At3g25420 822126 scpl21 (serine carboxypeptidase-like 21) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
971.5 100.0 430.6 At4g27890 828902 nuclear movement family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB O.I. C.G. H.G.
969.2 100.0 178.3 At4g18870 827621 heat shock transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
966.9 100.0 115.7 At2g26320 817172 AGL33 (AGAMOUS-LIKE 33) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
964.5 100.0 147.2 At1g20730 838663 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMV O.I. C.G. H.G.
940.1 100.0 345.9 At4g39000 830055 AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
927.8 100.0 260.7 At4g17160 827427 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA O.I. C.G. H.G.
919.3 100.0 415.0 At1g80330 844373 GA3OX4 (GIBBERELLIN 3-OXIDASE 4) Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29. O.I. C.G. H.G.
909.1 100.0 165.2 At5g09490 830808 40S ribosomal protein S15 (RPS15B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF O.I. C.G. H.G.
898.2 100.0 401.5 At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
896.6 100.0 376.5 At2g26870 817228 phosphoesterase family protein F:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOA O.I. C.G. H.G.
893.7 100.0 218.1 At1g72000 843531 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB O.I. C.G. H.G.
893.5 100.0 123.4 At1g73560 843690 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
891.6 100.0 607.8 At5g44830 834513 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA O.I. C.G. H.G.
889.7 100.0 331.6 At4g13080 826922 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
879.9 100.0 866.7 At1g65300 842838 AGL38 (AGAMOUS-LIKE 38) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
879.4 100.0 56.9 At3g66656 819848 AGL91 F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
878.4 100.0 113.3 At1g57780 842153 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBAF O.I. C.G. H.G.
874.5 100.0 50.3 At5g52480 835324 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
864.1 100.0 202.6 At1g72580 843590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
839.2 100.0 452.5 At3g60700 825241 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
818.0 100.0 140.6 At1g60985 842390 SCRL6 (SCR-Like 6) Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). O.I. C.G. H.G.
812.2 100.0 134.0 At3g03230 821322 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:membrane;PBOF O.I. C.G. H.G.
809.6 100.0 102.2 At4g20200 827766 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POF O.I. C.G. H.G.
795.7 100.0 174.3 At3g42830 823327 ring-box protein Roc1/Rbx1/Hrt1, putative F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV O.I. C.G. H.G.
790.9 100.0 74.7 At2g42090 818809 ACT9 (ACTIN 9) actin related gene or pseudogene, based on sequence divergence and lack of expression O.I. C.G. H.G.
787.8 100.0 66.3 At5g42910 834303 basic leucine zipper transcription factor (BZIP15) F:transcription factor activity, transcription activator activity, DNA binding;P:regulation of transcription, DNA-dependent, response to stress;C:nucleus;PMOFB O.I. C.G. H.G.
774.4 100.0 663.2 At5g38195 833801 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
758.1 100.0 122.7 At4g13380 826969 MEE56 (maternal effect embryo arrest 56) F:metal ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OMPBFAV O.I. C.G. H.G.
749.8 100.0 418.1 At2g15325 816022 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
735.3 100.0 215.8 At1g29080 839783 peptidase C1A papain family protein F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
719.5 100.0 108.1 At3g05310 819695 MIRO3 Encodes a protein with similarity to MIRO GTPases. O.I. C.G. H.G.
708.8 100.0 221.1 At1g19950 838584 HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
703.6 100.0 314.9 At1g20140 838604 ASK4 (ARABIDOPSIS SKP1-LIKE 4) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV O.I. C.G. H.G.
690.3 100.0 87.7 At3g24210 822007 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
685.3 100.0 75.6 At5g53840 835465 F-box family protein (FBL13) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P O.I. C.G. H.G.
680.1 100.0 208.9 At1g09510 837476 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
679.9 100.0 189.0 At1g10730 837616 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP O.I. C.G. H.G.
672.7 100.0 123.9 At5g52140 835290 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVB O.I. C.G. H.G.
665.4 100.0 57.1 At1g65640 842875 DegP4 (DegP protease 4) Encodes a putative DegP protease. O.I. C.G. H.G.
664.6 100.0 276.4 At5g65890 836718 ACR1 (ACT Domain Repeat 1) Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques. O.I. C.G. H.G.
659.5 100.0 97.5 At3g05860 819755 MADS-box protein (AGL45) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
659.4 100.0 213.1 At2g20160 816536 MEO (MEIDOS) F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
655.9 100.0 81.8 At1g48010 841219 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
654.2 100.0 423.7 At3g24280 822016 SMAP2 (small acidic protein 2) F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
640.2 100.0 92.4 At5g66150 836747 glycosyl hydrolase family 38 protein F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:endomembrane system;MBOPFA O.I. C.G. H.G.
638.9 100.0 188.9 At5g39560 833952 - F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAF O.I. C.G. H.G.
637.8 100.0 87.8 At2g18420 816357 - Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein O.I. C.G. H.G.
635.7 100.0 25.1 At2g24880 817025 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
634.6 100.0 49.5 At5g26250 832694 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
633.3 100.0 342.6 At1g67800 843106 copine-related F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF O.I. C.G. H.G.
626.4 100.0 65.3 At4g30120 829135 HMA3 (HEAVY METAL ATPASE 3) encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc O.I. C.G. H.G.
615.3 100.0 136.9 At3g58540 825023 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
610.8 100.0 164.3 At3g27710 822393 zinc finger protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVB O.I. C.G. H.G.
607.0 100.0 212.5 At1g16980 838269 ATTPS2 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
604.1 100.0 120.9 At3g26310 822235 CYP71B35 putative cytochrome P450 O.I. C.G. H.G.
597.2 100.0 150.3 At5g24510 832522 60s acidic ribosomal protein P1, putative F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MFOPA O.I. C.G. H.G.
597.2 100.0 87.5 At1g47810 841195 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
594.2 100.0 68.0 At1g29110 839786 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
593.7 100.0 60.9 At3g15490 820788 unknown protein F:unknown;P:biological_process unknown;C:unknown;PFOM O.I. C.G. H.G.
587.4 100.0 54.0 At2g31760 817733 zinc finger protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV O.I. C.G. H.G.
586.6 100.0 418.7 At4g35985 829753 senescence/dehydration-associated protein-related F:unknown;P:unknown;C:chloroplast;MPFO O.I. C.G. H.G.
585.9 100.0 55.9 At1g64030 842706 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF O.I. C.G. H.G.
585.4 100.0 85.3 At2g34555 818019 ATGA2OX3 (gibberellin 2-oxidase 3) F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM O.I. C.G. H.G.
579.9 100.0 163.0 At2g43670 818969 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1659.7	100.0	204.0	At4g15040	827163	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAM	O.I.	C.G.	H.G.
1551.8	100.0	232.9	At4g24650	828567	ATIPT4	AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds	O.I.	C.G.	H.G.
1542.9	100.0	174.0	At5g55590	835653	QRT1 (QUARTET 1)	Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.	O.I.	C.G.	H.G.
1525.9	100.0	401.1	At3g13370	820537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
1463.9	100.0	775.1	At1g07690	837282	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
1420.1	100.0	227.4	At5g63740	836494	zinc finger protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
1381.7	100.0	223.5	At3g06180	819792	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PFO	O.I.	C.G.	H.G.
1366.6	100.0	200.6	At5g03920	830271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1305.8	100.0	110.7	At5g05030	830385	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
1292.0	100.0	706.7	At2g42100	818810	actin, putative	F:protein binding, structural constituent of cytoskeleton, ATP binding;P:biological_process unknown;C:actin cytoskeleton;MFOPABV	O.I.	C.G.	H.G.
1250.2	100.0	560.9	At2g23990	816933	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMA	O.I.	C.G.	H.G.
1247.9	100.0	145.3	At2g12190	815688	cytochrome P450, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
1237.9	100.0	311.2	At3g09140	820068	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1216.1	100.0	81.3	At1g59800	842273	cullin-related	F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MFPO	O.I.	C.G.	H.G.
1175.6	100.0	211.7	At4g14780	827133	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
1168.0	100.0	99.1	At2g25630	817104	BGLU14 (BETA GLUCOSIDASE 14)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA	O.I.	C.G.	H.G.
1164.8	100.0	115.9	At4g34330	829583	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1164.2	100.0	186.9	At2g30730	817624	serine/threonine protein kinase, putative	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
1101.6	100.0	191.3	At2g18490	816364	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
1096.6	100.0	307.1	At3g48950	824056	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
1091.1	100.0	380.4	At1g02980	839415	CUL2 (CULLIN 2)	encodes an Arabidopsis cullin	O.I.	C.G.	H.G.
1090.2	100.0	661.8	At5g10230	830887	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	Encodes a calcium-binding protein annexin (AnnAt7).	O.I.	C.G.	H.G.
1061.3	100.0	261.8	At5g10220	830886	ANN6 (ANNEXIN ARABIDOPSIS 6)	Encodes a calcium-binding protein annexin (AnnAt6).	O.I.	C.G.	H.G.
1050.8	100.0	114.6	At5g65370	836662	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1047.6	100.0	212.0	At3g01880	821296	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBO	O.I.	C.G.	H.G.
1042.5	100.0	70.7	At1g12190	837772	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
1042.3	100.0	192.6	At2g27700	817316	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	F:translation factor activity, nucleic acid binding, GTP binding, GTPase activity;P:unknown;C:unknown;BOMFAP	O.I.	C.G.	H.G.
1038.9	100.0	1127.3	At2g39640	818547	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
1036.8	100.0	277.6	At2g03190	814848	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	one of SKP1 homologs. Gene is expressed specifically in the silique.	O.I.	C.G.	H.G.
1030.3	100.0	288.3	At5g05260	830408	CYP79A2 (CYTOCHROME P450 79A2)	Encodes cytochrome P450 CYP79A2.	O.I.	C.G.	H.G.
1028.8	100.0	971.9	At3g03410	821262	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
1017.2	100.0	259.0	At5g10660	830930	calmodulin-binding protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
1008.8	100.0	251.5	At1g76290	843962	AMP-dependent synthetase and ligase family protein	F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
998.5	100.0	259.3	At4g11510	826756	RALFL28 (ralf-like 28)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	O.I.	C.G.	H.G.
987.9	100.0	250.2	At4g37950	829951	lyase	F:lyase activity;P:biological_process unknown;C:unknown;PFB	O.I.	C.G.	H.G.
985.1	100.0	204.5	At3g25420	822126	scpl21 (serine carboxypeptidase-like 21)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
971.5	100.0	430.6	At4g27890	828902	nuclear movement family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB	O.I.	C.G.	H.G.
969.2	100.0	178.3	At4g18870	827621	heat shock transcription factor family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
966.9	100.0	115.7	At2g26320	817172	AGL33 (AGAMOUS-LIKE 33)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
964.5	100.0	147.2	At1g20730	838663	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMV	O.I.	C.G.	H.G.
940.1	100.0	345.9	At4g39000	830055	AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
927.8	100.0	260.7	At4g17160	827427	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
919.3	100.0	415.0	At1g80330	844373	GA3OX4 (GIBBERELLIN 3-OXIDASE 4)	Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29.	O.I.	C.G.	H.G.
909.1	100.0	165.2	At5g09490	830808	40S ribosomal protein S15 (RPS15B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
898.2	100.0	401.5	At5g17470	831613	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
896.6	100.0	376.5	At2g26870	817228	phosphoesterase family protein	F:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOA	O.I.	C.G.	H.G.
893.7	100.0	218.1	At1g72000	843531	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:cellular_component unknown;OPB	O.I.	C.G.	H.G.
893.5	100.0	123.4	At1g73560	843690	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
891.6	100.0	607.8	At5g44830	834513	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:cellular_component unknown;FPBOMA	O.I.	C.G.	H.G.
889.7	100.0	331.6	At4g13080	826922	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
879.9	100.0	866.7	At1g65300	842838	AGL38 (AGAMOUS-LIKE 38)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
879.4	100.0	56.9	At3g66656	819848	AGL91	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
878.4	100.0	113.3	At1g57780	842153	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBAF	O.I.	C.G.	H.G.
874.5	100.0	50.3	At5g52480	835324	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
864.1	100.0	202.6	At1g72580	843590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
839.2	100.0	452.5	At3g60700	825241	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
818.0	100.0	140.6	At1g60985	842390	SCRL6 (SCR-Like 6)	Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein).	O.I.	C.G.	H.G.
812.2	100.0	134.0	At3g03230	821322	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:membrane;PBOF	O.I.	C.G.	H.G.
809.6	100.0	102.2	At4g20200	827766	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POF	O.I.	C.G.	H.G.
795.7	100.0	174.3	At3g42830	823327	ring-box protein Roc1/Rbx1/Hrt1, putative	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:ubiquitin ligase complex;MOFPV	O.I.	C.G.	H.G.
790.9	100.0	74.7	At2g42090	818809	ACT9 (ACTIN 9)	actin related gene or pseudogene, based on sequence divergence and lack of expression	O.I.	C.G.	H.G.
787.8	100.0	66.3	At5g42910	834303	basic leucine zipper transcription factor (BZIP15)	F:transcription factor activity, transcription activator activity, DNA binding;P:regulation of transcription, DNA-dependent, response to stress;C:nucleus;PMOFB	O.I.	C.G.	H.G.
774.4	100.0	663.2	At5g38195	833801	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
758.1	100.0	122.7	At4g13380	826969	MEE56 (maternal effect embryo arrest 56)	F:metal ion binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;OMPBFAV	O.I.	C.G.	H.G.
749.8	100.0	418.1	At2g15325	816022	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
735.3	100.0	215.8	At1g29080	839783	peptidase C1A papain family protein	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
719.5	100.0	108.1	At3g05310	819695	MIRO3	Encodes a protein with similarity to MIRO GTPases.	O.I.	C.G.	H.G.
708.8	100.0	221.1	At1g19950	838584	HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
703.6	100.0	314.9	At1g20140	838604	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex, nucleolus, nucleus, cytoplasm;MPOFV	O.I.	C.G.	H.G.
690.3	100.0	87.7	At3g24210	822007	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
685.3	100.0	75.6	At5g53840	835465	F-box family protein (FBL13)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
680.1	100.0	208.9	At1g09510	837476	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
679.9	100.0	189.0	At1g10730	837616	clathrin adaptor complexes medium subunit family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOP	O.I.	C.G.	H.G.
672.7	100.0	123.9	At5g52140	835290	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFVB	O.I.	C.G.	H.G.
665.4	100.0	57.1	At1g65640	842875	DegP4 (DegP protease 4)	Encodes a putative DegP protease.	O.I.	C.G.	H.G.
664.6	100.0	276.4	At5g65890	836718	ACR1 (ACT Domain Repeat 1)	Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques.	O.I.	C.G.	H.G.
659.5	100.0	97.5	At3g05860	819755	MADS-box protein (AGL45)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
659.4	100.0	213.1	At2g20160	816536	MEO (MEIDOS)	F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
655.9	100.0	81.8	At1g48010	841219	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
654.2	100.0	423.7	At3g24280	822016	SMAP2 (small acidic protein 2)	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
640.2	100.0	92.4	At5g66150	836747	glycosyl hydrolase family 38 protein	F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:endomembrane system;MBOPFA	O.I.	C.G.	H.G.
638.9	100.0	188.9	At5g39560	833952	-	F:molecular_function unknown;P:unknown;C:chloroplast;MPOBVAF	O.I.	C.G.	H.G.
637.8	100.0	87.8	At2g18420	816357	-	Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein	O.I.	C.G.	H.G.
635.7	100.0	25.1	At2g24880	817025	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
634.6	100.0	49.5	At5g26250	832694	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:endomembrane system, integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
633.3	100.0	342.6	At1g67800	843106	copine-related	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF	O.I.	C.G.	H.G.
626.4	100.0	65.3	At4g30120	829135	HMA3 (HEAVY METAL ATPASE 3)	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	O.I.	C.G.	H.G.
615.3	100.0	136.9	At3g58540	825023	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
610.8	100.0	164.3	At3g27710	822393	zinc finger protein-related	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPVB	O.I.	C.G.	H.G.
607.0	100.0	212.5	At1g16980	838269	ATTPS2	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
604.1	100.0	120.9	At3g26310	822235	CYP71B35	putative cytochrome P450	O.I.	C.G.	H.G.
597.2	100.0	150.3	At5g24510	832522	60s acidic ribosomal protein P1, putative	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MFOPA	O.I.	C.G.	H.G.
597.2	100.0	87.5	At1g47810	841195	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
594.2	100.0	68.0	At1g29110	839786	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
593.7	100.0	60.9	At3g15490	820788	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PFOM	O.I.	C.G.	H.G.
587.4	100.0	54.0	At2g31760	817733	zinc finger protein-related	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV	O.I.	C.G.	H.G.
586.6	100.0	418.7	At4g35985	829753	senescence/dehydration-associated protein-related	F:unknown;P:unknown;C:chloroplast;MPFO	O.I.	C.G.	H.G.
585.9	100.0	55.9	At1g64030	842706	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF	O.I.	C.G.	H.G.
585.4	100.0	85.3	At2g34555	818019	ATGA2OX3 (gibberellin 2-oxidase 3)	F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
579.9	100.0	163.0	At2g43670	818969	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.

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GSM ID	GSM284392
Assay name	Arabidopsis GCE1
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284392 Assay name Arabidopsis GCE1 GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284392

Assay name Arabidopsis GCE1

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.