CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284391

Assay name Arabidopsis GPE3

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1564.5 100.0 59.1 At1g31250 840013 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA O.I. C.G. H.G.
1388.2 100.0 907.3 At4g35725 829725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1041.2 100.0 96.7 At3g24790 822077 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
941.8 100.0 295.4 At1g35183 840406 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
919.4 100.0 214.3 At3g14900 820719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA O.I. C.G. H.G.
826.5 100.0 148.8 At2g43660 818968 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
708.7 100.0 555.5 At5g09370 830796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
693.9 100.0 85.3 At5g12060 831079 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
679.8 100.0 95.8 At3g50720 824236 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
671.0 100.0 179.4 At3g02670 821280 proline-rich family protein F:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVA O.I. C.G. H.G.
639.8 100.0 56.4 At1g18350 838416 ATMKK7 MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance. O.I. C.G. H.G.
610.5 100.0 470.6 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
604.3 100.0 105.6 At1g02940 839479 GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
563.2 100.0 83.7 At3g17080 820965 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
547.7 100.0 244.7 At5g24316 832501 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO O.I. C.G. H.G.
480.5 100.0 81.6 At1g11070 837648 - F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
463.8 100.0 244.4 At2g27470 817292 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA O.I. C.G. H.G.
448.7 100.0 283.7 At3g05460 819711 sporozoite surface protein-related F:unknown;P:unknown;C:endomembrane system;MOBP O.I. C.G. H.G.
442.0 100.0 52.5 At5g20430 832165 mob1/phocein family protein F:protein binding;P:biological_process unknown;C:nucleus, phragmoplast;MFOP O.I. C.G. H.G.
401.3 100.0 37.1 At4g17505 827465 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
398.1 100.0 179.6 At2g23970 816930 defense-related protein, putative F:unknown;P:defense response;C:endomembrane system;OBAFPMV O.I. C.G. H.G.
396.4 100.0 61.3 At1g13680 837929 phospholipase C/ phosphoric diester hydrolase F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM O.I. C.G. H.G.
395.5 100.0 132.9 At5g23680 832433 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV O.I. C.G. H.G.
355.4 100.0 228.7 At4g25530 828658 FWA Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. O.I. C.G. H.G.
348.6 100.0 151.3 At1g76820 844016 GTP binding / GTPase F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
332.9 100.0 903.8 At2g30810 817632 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
327.7 100.0 46.5 At4g11400 826744 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein F:DNA binding;P:unknown;C:vacuole;PMF O.I. C.G. H.G.
300.0 100.0 256.0 At3g59820 825151 calcium-binding mitochondrial protein-related F:calcium ion binding;P:unknown;C:mitochondrion;MOFBPAV O.I. C.G. H.G.
297.5 100.0 66.6 At5g52330 835309 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO O.I. C.G. H.G.
293.8 100.0 226.3 At2g11890 815664 adenylate cyclase adenylate cyclase O.I. C.G. H.G.
276.7 100.0 104.0 At3g44050 823523 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
272.3 100.0 42.2 At5g60440 836165 AGL62 (Agamous-like 62) AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development. O.I. C.G. H.G.
270.9 100.0 355.2 At3g17170 820974 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA O.I. C.G. H.G.
262.4 100.0 42.8 At1g10010 837536 AAP8 Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity. O.I. C.G. H.G.
259.9 100.0 72.0 At5g26650 832724 AGL36 (AGAMOUS-LIKE 36) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
254.9 100.0 61.0 At4g31900 829320 chromatin remodeling factor, putative F:in 6 functions;P:chromatin assembly or disassembly;C:chromatin, nucleus;MBOFPVA O.I. C.G. H.G.
251.6 100.0 186.8 At5g23890 832454 - F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV O.I. C.G. H.G.
236.8 100.0 87.4 At5g59110 836029 subtilisin-like serine protease-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
235.8 100.0 150.3 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
227.6 100.0 316.9 At3g58660 825035 60S ribosomal protein-related F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAV O.I. C.G. H.G.
226.7 100.0 82.5 At1g69190 843250 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress. O.I. C.G. H.G.
223.9 100.0 356.7 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
218.1 100.0 35.1 At1g64940 842802 CYP89A6 member of CYP89A O.I. C.G. H.G.
213.9 100.0 51.8 At3g26940 822312 CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1) Receptor-like cytoplasmic kinase, RLCKVII subfamily O.I. C.G. H.G.
213.5 100.0 243.0 At4g10920 826690 KELP Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development. O.I. C.G. H.G.
207.7 100.0 225.2 At5g65880 836717 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
194.7 100.0 60.8 At2g40780 818675 RNA binding / translation initiation factor F:RNA binding, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MFPO O.I. C.G. H.G.
190.9 100.0 332.1 At1g72440 843576 EDA25 (embryo sac development arrest 25) F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA O.I. C.G. H.G.
190.7 100.0 25.5 At5g62110 836331 DNA binding F:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVP O.I. C.G. H.G.
188.3 100.0 385.1 At5g09730 830833 BXL3 (beta-xylosidase 3) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
188.0 100.0 31.2 At1g01530 837142 AGL28 (AGAMOUS-LIKE 28) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
181.5 100.0 64.3 At3g19350 821469 MPC (MATERNALLY EXPRESSED PAB C-TERMINAL) Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM. O.I. C.G. H.G.
181.4 100.0 332.6 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
180.1 100.0 120.3 At5g09500 830809 40S ribosomal protein S15 (RPS15C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF O.I. C.G. H.G.
173.1 100.0 198.0 At3g22660 821837 rRNA processing protein-related F:unknown;P:unknown;C:cellular_component unknown;MOFBP O.I. C.G. H.G.
171.1 100.0 298.3 At4g36810 829834 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. O.I. C.G. H.G.
170.4 100.0 278.0 At5g46950 834741 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
164.9 100.0 452.5 At3g24510 822044 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
161.2 99.9 33.5 At5g58830 836000 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
159.5 99.9 197.3 At5g27600 832820 LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5. O.I. C.G. H.G.
155.3 99.9 118.9 At1g67820 843108 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
151.2 99.9 421.9 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA O.I. C.G. H.G.
151.0 99.9 235.6 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP O.I. C.G. H.G.
148.6 99.9 177.3 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA O.I. C.G. H.G.
143.8 99.9 175.6 At1g30520 839932 AAE14 (Acyl-Activating Enzyme 14) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal. O.I. C.G. H.G.
142.5 99.9 204.5 At5g40610 834060 glycerol-3-phosphate dehydrogenase (NAD+) / GPDH F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA O.I. C.G. H.G.
140.9 99.9 119.5 At1g54440 841886 3'-5' exonuclease/ nucleic acid binding F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFP O.I. C.G. H.G.
139.1 99.9 190.0 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
139.0 99.9 58.9 At4g30110 829134 HMA2 encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc O.I. C.G. H.G.
137.4 99.9 77.7 At5g61880 836309 signaling molecule-related F:unknown;P:biological_process unknown;C:endomembrane system;MFPO O.I. C.G. H.G.
137.2 99.9 79.3 At2g43670 818969 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
135.5 99.9 91.6 At5g53800 835461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
132.8 99.9 76.6 At4g12240 826832 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion;PFO O.I. C.G. H.G.
128.2 99.9 71.5 At3g62470 825421 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
127.9 99.9 71.9 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
126.0 99.9 80.2 At2g21730 816710 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.
124.4 99.9 29.1 At1g32760 840170 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;PMOBF O.I. C.G. H.G.
122.0 99.9 504.9 At5g02490 831856 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
121.3 99.9 63.0 At5g27550 832815 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex O.I. C.G. H.G.
120.4 99.9 25.6 At5g52950 835372 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
119.8 99.9 41.5 At5g22980 832362 scpl47 (serine carboxypeptidase-like 47) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
119.6 99.9 54.1 At1g11950 837747 transcription factor F:transcription factor activity;P:unknown;C:unknown;MPOF O.I. C.G. H.G.
118.4 99.9 44.1 At4g03090 828094 sequence-specific DNA binding / transcription factor F:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPFVB O.I. C.G. H.G.
116.9 99.9 46.3 At5g58840 836001 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
116.4 99.9 210.0 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
115.4 99.9 376.6 At4g17520 827467 nuclear RNA-binding protein, putative F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA O.I. C.G. H.G.
115.2 99.9 40.2 At5g50780 835150 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA O.I. C.G. H.G.
115.1 99.9 119.7 At5g25060 832577 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA O.I. C.G. H.G.
115.1 99.9 80.5 At1g74070 843747 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen, chloroplast;MPFOB O.I. C.G. H.G.
114.9 99.9 178.4 At5g19900 832112 PRLI-interacting factor, putative F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA O.I. C.G. H.G.
112.5 99.9 37.3 At4g38700 830026 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
112.3 99.9 106.4 At3g45450 823685 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV O.I. C.G. H.G.
110.8 99.9 193.7 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA O.I. C.G. H.G.
107.8 99.9 166.9 At1g77210 844057 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA O.I. C.G. H.G.
107.8 99.9 44.5 At4g31270 829254 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOF O.I. C.G. H.G.
106.9 99.9 18.2 At2g24810 817018 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBO O.I. C.G. H.G.
106.8 99.9 49.5 At3g49890 824151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
105.3 99.9 200.6 At2g21060 816641 ATGRP2B (GLYCINE-RICH PROTEIN 2B) glycine-rich protein (AtGRP2b) O.I. C.G. H.G.
104.3 99.9 496.6 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
103.8 99.9 147.4 At3g57930 824962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1564.5	100.0	59.1	At1g31250	840013	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA	O.I.	C.G.	H.G.
1388.2	100.0	907.3	At4g35725	829725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1041.2	100.0	96.7	At3g24790	822077	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
941.8	100.0	295.4	At1g35183	840406	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
919.4	100.0	214.3	At3g14900	820719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA	O.I.	C.G.	H.G.
826.5	100.0	148.8	At2g43660	818968	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
708.7	100.0	555.5	At5g09370	830796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
693.9	100.0	85.3	At5g12060	831079	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
679.8	100.0	95.8	At3g50720	824236	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
671.0	100.0	179.4	At3g02670	821280	proline-rich family protein	F:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVA	O.I.	C.G.	H.G.
639.8	100.0	56.4	At1g18350	838416	ATMKK7	MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance.	O.I.	C.G.	H.G.
610.5	100.0	470.6	At5g60030	836125	unknown protein	F:unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
604.3	100.0	105.6	At1g02940	839479	GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
563.2	100.0	83.7	At3g17080	820965	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
547.7	100.0	244.7	At5g24316	832501	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO	O.I.	C.G.	H.G.
480.5	100.0	81.6	At1g11070	837648	-	F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
463.8	100.0	244.4	At2g27470	817292	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA	O.I.	C.G.	H.G.
448.7	100.0	283.7	At3g05460	819711	sporozoite surface protein-related	F:unknown;P:unknown;C:endomembrane system;MOBP	O.I.	C.G.	H.G.
442.0	100.0	52.5	At5g20430	832165	mob1/phocein family protein	F:protein binding;P:biological_process unknown;C:nucleus, phragmoplast;MFOP	O.I.	C.G.	H.G.
401.3	100.0	37.1	At4g17505	827465	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
398.1	100.0	179.6	At2g23970	816930	defense-related protein, putative	F:unknown;P:defense response;C:endomembrane system;OBAFPMV	O.I.	C.G.	H.G.
396.4	100.0	61.3	At1g13680	837929	phospholipase C/ phosphoric diester hydrolase	F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM	O.I.	C.G.	H.G.
395.5	100.0	132.9	At5g23680	832433	sterile alpha motif (SAM) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV	O.I.	C.G.	H.G.
355.4	100.0	228.7	At4g25530	828658	FWA	Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	O.I.	C.G.	H.G.
348.6	100.0	151.3	At1g76820	844016	GTP binding / GTPase	F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
332.9	100.0	903.8	At2g30810	817632	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
327.7	100.0	46.5	At4g11400	826744	ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein	F:DNA binding;P:unknown;C:vacuole;PMF	O.I.	C.G.	H.G.
300.0	100.0	256.0	At3g59820	825151	calcium-binding mitochondrial protein-related	F:calcium ion binding;P:unknown;C:mitochondrion;MOFBPAV	O.I.	C.G.	H.G.
297.5	100.0	66.6	At5g52330	835309	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO	O.I.	C.G.	H.G.
293.8	100.0	226.3	At2g11890	815664	adenylate cyclase	adenylate cyclase	O.I.	C.G.	H.G.
276.7	100.0	104.0	At3g44050	823523	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
272.3	100.0	42.2	At5g60440	836165	AGL62 (Agamous-like 62)	AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.	O.I.	C.G.	H.G.
270.9	100.0	355.2	At3g17170	820974	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA	O.I.	C.G.	H.G.
262.4	100.0	42.8	At1g10010	837536	AAP8	Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity.	O.I.	C.G.	H.G.
259.9	100.0	72.0	At5g26650	832724	AGL36 (AGAMOUS-LIKE 36)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
254.9	100.0	61.0	At4g31900	829320	chromatin remodeling factor, putative	F:in 6 functions;P:chromatin assembly or disassembly;C:chromatin, nucleus;MBOFPVA	O.I.	C.G.	H.G.
251.6	100.0	186.8	At5g23890	832454	-	F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV	O.I.	C.G.	H.G.
236.8	100.0	87.4	At5g59110	836029	subtilisin-like serine protease-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
235.8	100.0	150.3	At3g19650	821502	cyclin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
227.6	100.0	316.9	At3g58660	825035	60S ribosomal protein-related	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAV	O.I.	C.G.	H.G.
226.7	100.0	82.5	At1g69190	843250	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.	O.I.	C.G.	H.G.
223.9	100.0	356.7	At1g15200	838086	protein-protein interaction regulator family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
218.1	100.0	35.1	At1g64940	842802	CYP89A6	member of CYP89A	O.I.	C.G.	H.G.
213.9	100.0	51.8	At3g26940	822312	CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1)	Receptor-like cytoplasmic kinase, RLCKVII subfamily	O.I.	C.G.	H.G.
213.5	100.0	243.0	At4g10920	826690	KELP	Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development.	O.I.	C.G.	H.G.
207.7	100.0	225.2	At5g65880	836717	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
194.7	100.0	60.8	At2g40780	818675	RNA binding / translation initiation factor	F:RNA binding, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
190.9	100.0	332.1	At1g72440	843576	EDA25 (embryo sac development arrest 25)	F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA	O.I.	C.G.	H.G.
190.7	100.0	25.5	At5g62110	836331	DNA binding	F:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVP	O.I.	C.G.	H.G.
188.3	100.0	385.1	At5g09730	830833	BXL3 (beta-xylosidase 3)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
188.0	100.0	31.2	At1g01530	837142	AGL28 (AGAMOUS-LIKE 28)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
181.5	100.0	64.3	At3g19350	821469	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.	O.I.	C.G.	H.G.
181.4	100.0	332.6	At3g50690	824233	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
180.1	100.0	120.3	At5g09500	830809	40S ribosomal protein S15 (RPS15C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
173.1	100.0	198.0	At3g22660	821837	rRNA processing protein-related	F:unknown;P:unknown;C:cellular_component unknown;MOFBP	O.I.	C.G.	H.G.
171.1	100.0	298.3	At4g36810	829834	GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1)	Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.	O.I.	C.G.	H.G.
170.4	100.0	278.0	At5g46950	834741	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
164.9	100.0	452.5	At3g24510	822044	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
161.2	99.9	33.5	At5g58830	836000	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
159.5	99.9	197.3	At5g27600	832820	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.	O.I.	C.G.	H.G.
155.3	99.9	118.9	At1g67820	843108	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
151.2	99.9	421.9	At1g47970	841215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	O.I.	C.G.	H.G.
151.0	99.9	235.6	At3g02760	820930	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP	O.I.	C.G.	H.G.
148.6	99.9	177.3	At2g40650	818660	pre-mRNA splicing factor PRP38 family protein	F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA	O.I.	C.G.	H.G.
143.8	99.9	175.6	At1g30520	839932	AAE14 (Acyl-Activating Enzyme 14)	Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.	O.I.	C.G.	H.G.
142.5	99.9	204.5	At5g40610	834060	glycerol-3-phosphate dehydrogenase (NAD+) / GPDH	F:in 9 functions;P:oxidation reduction, glycerol-3-phosphate metabolic process, glycerol-3-phosphate catabolic process, carbohydrate metabolic process, metabolic process;C:chloroplast, glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMFPA	O.I.	C.G.	H.G.
140.9	99.9	119.5	At1g54440	841886	3'-5' exonuclease/ nucleic acid binding	F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFP	O.I.	C.G.	H.G.
139.1	99.9	190.0	At1g15940	838164	binding	F:binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
139.0	99.9	58.9	At4g30110	829134	HMA2	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	O.I.	C.G.	H.G.
137.4	99.9	77.7	At5g61880	836309	signaling molecule-related	F:unknown;P:biological_process unknown;C:endomembrane system;MFPO	O.I.	C.G.	H.G.
137.2	99.9	79.3	At2g43670	818969	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
135.5	99.9	91.6	At5g53800	835461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
132.8	99.9	76.6	At4g12240	826832	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion;PFO	O.I.	C.G.	H.G.
128.2	99.9	71.5	At3g62470	825421	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
127.9	99.9	71.9	At5g16950	831558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
126.0	99.9	80.2	At2g21730	816710	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
124.4	99.9	29.1	At1g32760	840170	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:chloroplast;PMOBF	O.I.	C.G.	H.G.
122.0	99.9	504.9	At5g02490	831856	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
121.3	99.9	63.0	At5g27550	832815	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex	O.I.	C.G.	H.G.
120.4	99.9	25.6	At5g52950	835372	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
119.8	99.9	41.5	At5g22980	832362	scpl47 (serine carboxypeptidase-like 47)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
119.6	99.9	54.1	At1g11950	837747	transcription factor	F:transcription factor activity;P:unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
118.4	99.9	44.1	At4g03090	828094	sequence-specific DNA binding / transcription factor	F:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPFVB	O.I.	C.G.	H.G.
116.9	99.9	46.3	At5g58840	836001	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
116.4	99.9	210.0	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
115.4	99.9	376.6	At4g17520	827467	nuclear RNA-binding protein, putative	F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA	O.I.	C.G.	H.G.
115.2	99.9	40.2	At5g50780	835150	ATP binding	F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA	O.I.	C.G.	H.G.
115.1	99.9	119.7	At5g25060	832577	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
115.1	99.9	80.5	At1g74070	843747	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen, chloroplast;MPFOB	O.I.	C.G.	H.G.
114.9	99.9	178.4	At5g19900	832112	PRLI-interacting factor, putative	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA	O.I.	C.G.	H.G.
112.5	99.9	37.3	At4g38700	830026	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
112.3	99.9	106.4	At3g45450	823685	Clp amino terminal domain-containing protein	F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV	O.I.	C.G.	H.G.
110.8	99.9	193.7	At1g28420	839740	HB-1 (homeobox-1)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
107.8	99.9	166.9	At1g77210	844057	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
107.8	99.9	44.5	At4g31270	829254	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
106.9	99.9	18.2	At2g24810	817018	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
106.8	99.9	49.5	At3g49890	824151	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
105.3	99.9	200.6	At2g21060	816641	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	glycine-rich protein (AtGRP2b)	O.I.	C.G.	H.G.
104.3	99.9	496.6	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
103.8	99.9	147.4	At3g57930	824962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.

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GSM ID	GSM284391
Assay name	Arabidopsis GPE3
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284391 Assay name Arabidopsis GPE3 GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284391

Assay name Arabidopsis GPE3

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.