CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284390

Assay name Arabidopsis GPE2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1198.4 100.0 179.1 At2g43660 818968 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1164.6 100.0 51.0 At1g31250 840013 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA O.I. C.G. H.G.
984.9 100.0 299.4 At1g67820 843108 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
793.0 100.0 103.5 At3g50720 824236 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
648.3 100.0 76.3 At3g24790 822077 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
619.4 100.0 212.7 At5g66820 836816 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFBVM O.I. C.G. H.G.
512.3 100.0 84.2 At1g11070 837648 - F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
491.8 100.0 55.4 At5g20430 832165 mob1/phocein family protein F:protein binding;P:biological_process unknown;C:nucleus, phragmoplast;MFOP O.I. C.G. H.G.
472.9 100.0 227.3 At5g24316 832501 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO O.I. C.G. H.G.
465.9 100.0 83.3 At5g52330 835309 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO O.I. C.G. H.G.
422.4 100.0 391.4 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
405.9 100.0 490.6 At4g35725 829725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
381.0 100.0 83.8 At1g02940 839479 GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
371.4 100.0 65.5 At2g32370 817798 HDG3 (HOMEODOMAIN GLABROUS 3) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development. O.I. C.G. H.G.
370.0 100.0 91.0 At5g48650 834922 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA O.I. C.G. H.G.
364.1 100.0 398.2 At5g09370 830796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
364.1 100.0 42.5 At1g18350 838416 ATMKK7 MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance. O.I. C.G. H.G.
357.5 100.0 61.2 At5g12060 831079 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
351.0 100.0 66.3 At3g26940 822312 CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1) Receptor-like cytoplasmic kinase, RLCKVII subfamily O.I. C.G. H.G.
338.8 100.0 87.8 At3g19350 821469 MPC (MATERNALLY EXPRESSED PAB C-TERMINAL) Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM. O.I. C.G. H.G.
311.5 100.0 124.8 At3g14900 820719 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA O.I. C.G. H.G.
310.5 100.0 169.6 At1g35183 840406 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
302.7 100.0 174.6 At3g45450 823685 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV O.I. C.G. H.G.
287.0 100.0 31.4 At4g17505 827465 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
274.2 100.0 58.3 At4g38700 830026 disease resistance-responsive family protein F:molecular_function unknown;P:defense response;C:endomembrane system;P O.I. C.G. H.G.
255.8 100.0 106.9 At5g23680 832433 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV O.I. C.G. H.G.
253.0 100.0 213.1 At3g05460 819711 sporozoite surface protein-related F:unknown;P:unknown;C:endomembrane system;MOBP O.I. C.G. H.G.
252.6 100.0 248.3 At5g27600 832820 LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5. O.I. C.G. H.G.
250.3 100.0 141.8 At5g09500 830809 40S ribosomal protein S15 (RPS15C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF O.I. C.G. H.G.
250.1 100.0 107.0 At2g43670 818969 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
232.1 100.0 61.8 At4g03090 828094 sequence-specific DNA binding / transcription factor F:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPFVB O.I. C.G. H.G.
231.8 100.0 136.3 At1g05460 837047 SDE3 (SILENCING DEFECTIVE) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. O.I. C.G. H.G.
231.1 100.0 115.1 At3g49240 824085 emb1796 (embryo defective 1796) F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBA O.I. C.G. H.G.
230.4 100.0 534.9 At3g24510 822044 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
226.4 100.0 77.5 At3g10780 820247 emp24/gp25L/p24 family protein F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO O.I. C.G. H.G.
225.3 100.0 287.8 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP O.I. C.G. H.G.
222.2 100.0 103.2 At3g02670 821280 proline-rich family protein F:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVA O.I. C.G. H.G.
220.8 100.0 52.4 At3g17080 820965 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
212.8 100.0 350.6 At1g72440 843576 EDA25 (embryo sac development arrest 25) F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA O.I. C.G. H.G.
210.5 100.0 718.7 At2g30810 817632 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
193.2 100.0 264.8 At2g02515 814781 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
192.6 100.0 634.4 At5g02490 831856 heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
192.5 100.0 36.6 At1g10010 837536 AAP8 Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity. O.I. C.G. H.G.
188.6 100.0 155.9 At2g27470 817292 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA O.I. C.G. H.G.
188.0 100.0 111.1 At1g76820 844016 GTP binding / GTPase F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
171.3 100.0 124.3 At2g21440 816683 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
169.4 100.0 63.0 At1g55550 842004 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:mitochondrion;MOFPB O.I. C.G. H.G.
165.7 100.0 106.9 At5g05210 830403 nucleolar matrix protein-related F:unknown;P:unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
161.6 99.9 106.3 At3g18610 821392 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1) F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
160.8 99.9 32.4 At5g60440 836165 AGL62 (Agamous-like 62) AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development. O.I. C.G. H.G.
160.7 99.9 17.4 At1g65360 842846 AGL23 (AGAMOUS-LIKE 23) Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development. O.I. C.G. H.G.
160.3 99.9 29.5 At5g52950 835372 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
152.8 99.9 153.3 At4g25020 828605 KOW domain-containing protein / D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO O.I. C.G. H.G.
150.6 99.9 178.5 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA O.I. C.G. H.G.
150.3 99.9 669.3 At2g07671 815343 H+-transporting two-sector ATPase, C subunit family protein F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP O.I. C.G. H.G.
148.5 99.9 91.0 At1g64600 842768 copper ion binding / methyltransferase F:methyltransferase activity, copper ion binding;P:translation;C:cellular_component unknown;MFOBP O.I. C.G. H.G.
147.4 99.9 195.7 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA O.I. C.G. H.G.
147.3 99.9 255.0 At3g58660 825035 60S ribosomal protein-related F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAV O.I. C.G. H.G.
146.9 99.9 424.7 At4g17520 827467 nuclear RNA-binding protein, putative F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA O.I. C.G. H.G.
146.3 99.9 56.2 At3g55060 824672 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
142.9 99.9 40.9 At5g54350 835523 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOF O.I. C.G. H.G.
140.4 99.9 139.5 At5g23890 832454 - F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV O.I. C.G. H.G.
138.2 99.9 31.0 At5g58830 836000 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
135.9 99.9 92.6 At5g06350 830523 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
131.5 99.9 33.7 At5g62120 836332 ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23) member of Response Regulator: B- Type O.I. C.G. H.G.
131.1 99.9 45.6 At1g03830 839398 guanylate-binding family protein F:GTP binding, GTPase activity;P:immune response;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
130.5 99.9 115.0 At1g54440 841886 3'-5' exonuclease/ nucleic acid binding F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFP O.I. C.G. H.G.
128.0 99.9 240.9 At5g46950 834741 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
126.9 99.9 84.0 At3g52170 824382 DNA binding F:DNA binding;P:biological_process unknown;C:unknown;BMPOAF O.I. C.G. H.G.
125.7 99.9 45.9 At5g55520 835646 - F:unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
123.3 99.9 134.7 At4g25530 828658 FWA Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. O.I. C.G. H.G.
122.9 99.9 204.1 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA O.I. C.G. H.G.
118.5 99.9 20.1 At5g62110 836331 DNA binding F:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVP O.I. C.G. H.G.
117.3 99.9 54.9 At2g18520 816367 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:membrane;POMFBA O.I. C.G. H.G.
117.0 99.9 61.4 At5g59110 836029 subtilisin-like serine protease-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
115.9 99.9 61.6 At5g27550 832815 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex O.I. C.G. H.G.
114.9 99.9 40.6 At5g22980 832362 scpl47 (serine carboxypeptidase-like 47) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
114.8 99.9 67.0 At3g44050 823523 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
112.6 99.9 203.3 At2g29210 817470 splicing factor PWI domain-containing protein F:unknown;P:RNA splicing;C:unknown;MOFBPVA O.I. C.G. H.G.
111.3 99.9 95.0 At2g23970 816930 defense-related protein, putative F:unknown;P:defense response;C:endomembrane system;OBAFPMV O.I. C.G. H.G.
110.7 99.9 250.8 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. C.G. H.G.
110.2 99.9 204.4 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
109.3 99.9 102.4 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
108.2 99.9 83.6 At5g10220 830886 ANN6 (ANNEXIN ARABIDOPSIS 6) Encodes a calcium-binding protein annexin (AnnAt6). O.I. C.G. H.G.
106.9 99.9 223.2 At3g17170 820974 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA O.I. C.G. H.G.
106.4 99.9 24.6 At3g58210 824990 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBA O.I. C.G. H.G.
105.6 99.9 51.6 At5g08360 830734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
105.2 99.9 74.1 At2g06210 815177 ELF8 (EARLY FLOWERING 8) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. O.I. C.G. H.G.
102.6 99.9 75.8 At3g06010 819772 ATCHR12 Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress. O.I. C.G. H.G.
102.4 99.9 38.7 At4g31900 829320 chromatin remodeling factor, putative F:in 6 functions;P:chromatin assembly or disassembly;C:chromatin, nucleus;MBOFPVA O.I. C.G. H.G.
98.3 99.9 22.6 At1g01530 837142 AGL28 (AGAMOUS-LIKE 28) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
97.1 99.9 110.0 At5g25060 832577 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA O.I. C.G. H.G.
96.9 99.9 287.6 At1g65300 842838 AGL38 (AGAMOUS-LIKE 38) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
96.3 99.9 168.0 At3g07780 819969 OBE1 (OBERON1) Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. O.I. C.G. H.G.
94.8 99.9 128.8 At2g47990 819411 SWA1 (SLOW WALKER1) Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant. O.I. C.G. H.G.
93.1 99.9 115.8 At4g25730 828678 FtsJ-like methyltransferase family protein F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA O.I. C.G. H.G.
92.9 99.9 61.3 At5g16950 831558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
92.3 99.9 60.8 At2g24580 816994 sarcosine oxidase family protein F:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
90.3 99.9 72.6 At3g54230 824590 nucleic acid binding / nucleotide binding / zinc ion binding F:nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOFPBAV O.I. C.G. H.G.
89.5 99.9 46.0 At1g55040 841947 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1198.4	100.0	179.1	At2g43660	818968	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1164.6	100.0	51.0	At1g31250	840013	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA	O.I.	C.G.	H.G.
984.9	100.0	299.4	At1g67820	843108	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
793.0	100.0	103.5	At3g50720	824236	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
648.3	100.0	76.3	At3g24790	822077	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
619.4	100.0	212.7	At5g66820	836816	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFBVM	O.I.	C.G.	H.G.
512.3	100.0	84.2	At1g11070	837648	-	F:unknown;P:unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
491.8	100.0	55.4	At5g20430	832165	mob1/phocein family protein	F:protein binding;P:biological_process unknown;C:nucleus, phragmoplast;MFOP	O.I.	C.G.	H.G.
472.9	100.0	227.3	At5g24316	832501	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO	O.I.	C.G.	H.G.
465.9	100.0	83.3	At5g52330	835309	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO	O.I.	C.G.	H.G.
422.4	100.0	391.4	At5g60030	836125	unknown protein	F:unknown;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
405.9	100.0	490.6	At4g35725	829725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
381.0	100.0	83.8	At1g02940	839479	GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
371.4	100.0	65.5	At2g32370	817798	HDG3 (HOMEODOMAIN GLABROUS 3)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.	O.I.	C.G.	H.G.
370.0	100.0	91.0	At5g48650	834922	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:endomembrane system, intracellular;MPFOBA	O.I.	C.G.	H.G.
364.1	100.0	398.2	At5g09370	830796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
364.1	100.0	42.5	At1g18350	838416	ATMKK7	MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance.	O.I.	C.G.	H.G.
357.5	100.0	61.2	At5g12060	831079	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
351.0	100.0	66.3	At3g26940	822312	CDG1 (CONSTITUTIVE DIFFERENTIAL GROWTH 1)	Receptor-like cytoplasmic kinase, RLCKVII subfamily	O.I.	C.G.	H.G.
338.8	100.0	87.8	At3g19350	821469	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.	O.I.	C.G.	H.G.
311.5	100.0	124.8	At3g14900	820719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVA	O.I.	C.G.	H.G.
310.5	100.0	169.6	At1g35183	840406	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
302.7	100.0	174.6	At3g45450	823685	Clp amino terminal domain-containing protein	F:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMV	O.I.	C.G.	H.G.
287.0	100.0	31.4	At4g17505	827465	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
274.2	100.0	58.3	At4g38700	830026	disease resistance-responsive family protein	F:molecular_function unknown;P:defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
255.8	100.0	106.9	At5g23680	832433	sterile alpha motif (SAM) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV	O.I.	C.G.	H.G.
253.0	100.0	213.1	At3g05460	819711	sporozoite surface protein-related	F:unknown;P:unknown;C:endomembrane system;MOBP	O.I.	C.G.	H.G.
252.6	100.0	248.3	At5g27600	832820	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7)	Encode peroxisomal long-chain acyl-CoA synthetase. Activates fatty acids for further metabolism. Interacts with PEX5.	O.I.	C.G.	H.G.
250.3	100.0	141.8	At5g09500	830809	40S ribosomal protein S15 (RPS15C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
250.1	100.0	107.0	At2g43670	818969	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
232.1	100.0	61.8	At4g03090	828094	sequence-specific DNA binding / transcription factor	F:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMPFVB	O.I.	C.G.	H.G.
231.8	100.0	136.3	At1g05460	837047	SDE3 (SILENCING DEFECTIVE)	Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.	O.I.	C.G.	H.G.
231.1	100.0	115.1	At3g49240	824085	emb1796 (embryo defective 1796)	F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBA	O.I.	C.G.	H.G.
230.4	100.0	534.9	At3g24510	822044	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
226.4	100.0	77.5	At3g10780	820247	emp24/gp25L/p24 family protein	F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO	O.I.	C.G.	H.G.
225.3	100.0	287.8	At3g02760	820930	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP	O.I.	C.G.	H.G.
222.2	100.0	103.2	At3g02670	821280	proline-rich family protein	F:molecular_function unknown;P:unknown;C:endomembrane system;MOBPFVA	O.I.	C.G.	H.G.
220.8	100.0	52.4	At3g17080	820965	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
212.8	100.0	350.6	At1g72440	843576	EDA25 (embryo sac development arrest 25)	F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVA	O.I.	C.G.	H.G.
210.5	100.0	718.7	At2g30810	817632	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
193.2	100.0	264.8	At2g02515	814781	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
192.6	100.0	634.4	At5g02490	831856	heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2)	F:ATP binding;P:protein folding, response to cadmium ion, response to heat, response to bacterium;C:cytosol, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
192.5	100.0	36.6	At1g10010	837536	AAP8	Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity.	O.I.	C.G.	H.G.
188.6	100.0	155.9	At2g27470	817292	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA	O.I.	C.G.	H.G.
188.0	100.0	111.1	At1g76820	844016	GTP binding / GTPase	F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
171.3	100.0	124.3	At2g21440	816683	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
169.4	100.0	63.0	At1g55550	842004	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:mitochondrion;MOFPB	O.I.	C.G.	H.G.
165.7	100.0	106.9	At5g05210	830403	nucleolar matrix protein-related	F:unknown;P:unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
161.6	99.9	106.3	At3g18610	821392	ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)	F:nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
160.8	99.9	32.4	At5g60440	836165	AGL62 (Agamous-like 62)	AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.	O.I.	C.G.	H.G.
160.7	99.9	17.4	At1g65360	842846	AGL23 (AGAMOUS-LIKE 23)	Encodes AGL23, a Type I MADS-box gene that controls female gametophyte development and the biogenesis of organelles during embryo development.	O.I.	C.G.	H.G.
160.3	99.9	29.5	At5g52950	835372	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
152.8	99.9	153.3	At4g25020	828605	KOW domain-containing protein / D111/G-patch domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:intracellular;MFPO	O.I.	C.G.	H.G.
150.6	99.9	178.5	At2g40650	818660	pre-mRNA splicing factor PRP38 family protein	F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA	O.I.	C.G.	H.G.
150.3	99.9	669.3	At2g07671	815343	H+-transporting two-sector ATPase, C subunit family protein	F:hydrogen ion transmembrane transporter activity, ATPase activity;P:proton transport, ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain;OBMFP	O.I.	C.G.	H.G.
148.5	99.9	91.0	At1g64600	842768	copper ion binding / methyltransferase	F:methyltransferase activity, copper ion binding;P:translation;C:cellular_component unknown;MFOBP	O.I.	C.G.	H.G.
147.4	99.9	195.7	At1g15940	838164	binding	F:binding;P:biological_process unknown;C:unknown;MOBFPVA	O.I.	C.G.	H.G.
147.3	99.9	255.0	At3g58660	825035	60S ribosomal protein-related	F:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAV	O.I.	C.G.	H.G.
146.9	99.9	424.7	At4g17520	827467	nuclear RNA-binding protein, putative	F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA	O.I.	C.G.	H.G.
146.3	99.9	56.2	At3g55060	824672	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
142.9	99.9	40.9	At5g54350	835523	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOF	O.I.	C.G.	H.G.
140.4	99.9	139.5	At5g23890	832454	-	F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV	O.I.	C.G.	H.G.
138.2	99.9	31.0	At5g58830	836000	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
135.9	99.9	92.6	At5g06350	830523	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
131.5	99.9	33.7	At5g62120	836332	ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23)	member of Response Regulator: B- Type	O.I.	C.G.	H.G.
131.1	99.9	45.6	At1g03830	839398	guanylate-binding family protein	F:GTP binding, GTPase activity;P:immune response;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
130.5	99.9	115.0	At1g54440	841886	3'-5' exonuclease/ nucleic acid binding	F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMFP	O.I.	C.G.	H.G.
128.0	99.9	240.9	At5g46950	834741	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
126.9	99.9	84.0	At3g52170	824382	DNA binding	F:DNA binding;P:biological_process unknown;C:unknown;BMPOAF	O.I.	C.G.	H.G.
125.7	99.9	45.9	At5g55520	835646	-	F:unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
123.3	99.9	134.7	At4g25530	828658	FWA	Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	O.I.	C.G.	H.G.
122.9	99.9	204.1	At1g28420	839740	HB-1 (homeobox-1)	F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA	O.I.	C.G.	H.G.
118.5	99.9	20.1	At5g62110	836331	DNA binding	F:DNA binding;P:regulation of transcription;C:cellular_component unknown;OBMFAVP	O.I.	C.G.	H.G.
117.3	99.9	54.9	At2g18520	816367	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:membrane;POMFBA	O.I.	C.G.	H.G.
117.0	99.9	61.4	At5g59110	836029	subtilisin-like serine protease-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
115.9	99.9	61.6	At5g27550	832815	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex	O.I.	C.G.	H.G.
114.9	99.9	40.6	At5g22980	832362	scpl47 (serine carboxypeptidase-like 47)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
114.8	99.9	67.0	At3g44050	823523	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
112.6	99.9	203.3	At2g29210	817470	splicing factor PWI domain-containing protein	F:unknown;P:RNA splicing;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
111.3	99.9	95.0	At2g23970	816930	defense-related protein, putative	F:unknown;P:defense response;C:endomembrane system;OBAFPMV	O.I.	C.G.	H.G.
110.7	99.9	250.8	At1g15200	838086	protein-protein interaction regulator family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	C.G.	H.G.
110.2	99.9	204.4	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
109.3	99.9	102.4	At3g19650	821502	cyclin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
108.2	99.9	83.6	At5g10220	830886	ANN6 (ANNEXIN ARABIDOPSIS 6)	Encodes a calcium-binding protein annexin (AnnAt6).	O.I.	C.G.	H.G.
106.9	99.9	223.2	At3g17170	820974	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA	O.I.	C.G.	H.G.
106.4	99.9	24.6	At3g58210	824990	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBA	O.I.	C.G.	H.G.
105.6	99.9	51.6	At5g08360	830734	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
105.2	99.9	74.1	At2g06210	815177	ELF8 (EARLY FLOWERING 8)	Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.	O.I.	C.G.	H.G.
102.6	99.9	75.8	At3g06010	819772	ATCHR12	Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.	O.I.	C.G.	H.G.
102.4	99.9	38.7	At4g31900	829320	chromatin remodeling factor, putative	F:in 6 functions;P:chromatin assembly or disassembly;C:chromatin, nucleus;MBOFPVA	O.I.	C.G.	H.G.
98.3	99.9	22.6	At1g01530	837142	AGL28 (AGAMOUS-LIKE 28)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
97.1	99.9	110.0	At5g25060	832577	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
96.9	99.9	287.6	At1g65300	842838	AGL38 (AGAMOUS-LIKE 38)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
96.3	99.9	168.0	At3g07780	819969	OBE1 (OBERON1)	Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.	O.I.	C.G.	H.G.
94.8	99.9	128.8	At2g47990	819411	SWA1 (SLOW WALKER1)	Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.	O.I.	C.G.	H.G.
93.1	99.9	115.8	At4g25730	828678	FtsJ-like methyltransferase family protein	F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA	O.I.	C.G.	H.G.
92.9	99.9	61.3	At5g16950	831558	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
92.3	99.9	60.8	At2g24580	816994	sarcosine oxidase family protein	F:sarcosine oxidase activity;P:tetrahydrofolate metabolic process;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
90.3	99.9	72.6	At3g54230	824590	nucleic acid binding / nucleotide binding / zinc ion binding	F:nucleotide binding, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOFPBAV	O.I.	C.G.	H.G.
89.5	99.9	46.0	At1g55040	841947	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVA	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM284390
Assay name	Arabidopsis GPE2
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284390 Assay name Arabidopsis GPE2 GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284390

Assay name Arabidopsis GPE2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.