CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284389

Assay name Arabidopsis GMPE2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2540.5 100.0 466.6 At4g20800 827828 FAD-binding domain-containing protein F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
2299.7 100.0 169.8 At3g46840 823837 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
2262.0 100.0 437.7 At4g39650 830119 GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation. O.I. C.G. H.G.
2250.0 100.0 400.8 At1g34410 840344 ARF21 (AUXIN RESPONSE FACTOR 21) F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
2155.0 100.0 746.4 At5g15000 831352 - Encodes a ECA1 gametogenesis related family protein O.I. C.G. H.G.
1943.9 100.0 257.7 At3g57270 824894 BG1 (BETA-1,3-GLUCANASE 1) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
1871.1 100.0 398.3 At3g17140 820971 invertase inhibitor-related F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1782.4 100.0 235.4 At5g40680 834068 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPOBFA O.I. C.G. H.G.
1715.6 100.0 163.4 At5g39440 833940 SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
1707.7 100.0 391.2 At2g17750 816284 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
1602.0 100.0 227.0 At2g19500 816469 CKX2 (CYTOKININ OXIDASE 2) It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
1552.5 100.0 161.5 At5g06500 830538 AGL96 (AGAMOUS-LIKE 96) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
1521.0 100.0 735.2 At5g39260 833922 ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
1506.8 100.0 693.0 At1g10190 837557 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
1342.3 100.0 223.5 At4g33830 829525 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPF O.I. C.G. H.G.
1338.2 100.0 135.8 At5g35900 833576 LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35) F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1330.5 100.0 275.8 At1g56620 842117 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1310.2 100.0 381.8 At5g25410 832613 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
1223.3 100.0 240.9 At3g12190 820396 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
1218.0 100.0 161.6 At1g64830 842791 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
1217.6 100.0 88.0 At1g34170 840316 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
1207.8 100.0 195.3 At2g30090 817560 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MPBAO O.I. C.G. H.G.
1138.2 100.0 172.8 At5g19270 832047 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
1123.7 100.0 168.3 At5g07260 830617 homeobox protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
1121.6 100.0 165.1 At1g62340 842532 ALE1 (ABNORMAL LEAF-SHAPE 1) Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plants O.I. C.G. H.G.
1081.1 100.0 348.1 At5g14860 831338 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
1079.0 100.0 330.9 At2g37720 818349 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
1062.0 100.0 122.4 At4g32080 829339 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1049.3 100.0 173.1 At1g22015 838806 DD46 F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOF O.I. C.G. H.G.
1040.2 100.0 63.9 At3g11920 820365 glutaredoxin-related F:electron carrier activity, protein disulfide oxidoreductase activity;P:intracellular signaling cascade, cell redox homeostasis;C:cellular_component unknown;BOMPF O.I. C.G. H.G.
1031.9 100.0 345.4 At2g06090 815164 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
1029.6 100.0 683.2 At5g46950 834741 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
933.0 100.0 331.0 At1g09370 837459 enzyme inhibitor/ pectinesterase F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
882.2 100.0 243.3 At1g44130 841016 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF O.I. C.G. H.G.
859.2 100.0 88.3 At2g34990 818063 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
855.7 100.0 112.9 At5g52330 835309 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO O.I. C.G. H.G.
809.4 100.0 766.7 At4g29285 829050 LCR24 (Low-molecular-weight cysteine-rich 24) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. O.I. C.G. H.G.
804.6 100.0 142.1 At4g10210 826612 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
797.8 100.0 145.4 At3g10780 820247 emp24/gp25L/p24 family protein F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO O.I. C.G. H.G.
780.9 100.0 787.4 At5g54220 835510 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
732.3 100.0 465.9 At4g30070 829130 LCR59 (Low-molecular-weight cysteine-rich 59) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
714.3 100.0 104.8 At1g03445 838804 BSU1 (BRI1 SUPPRESSOR 1) encodes a serine�threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid. O.I. C.G. H.G.
712.1 100.0 82.2 At1g13680 837929 phospholipase C/ phosphoric diester hydrolase F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM O.I. C.G. H.G.
711.9 100.0 395.8 At3g46860 823839 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
672.2 100.0 147.2 At5g59110 836029 subtilisin-like serine protease-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
658.1 100.0 553.9 At5g46810 834725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
650.5 100.0 899.7 At5g39280 833924 ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
641.8 100.0 711.0 At5g09730 830833 BXL3 (beta-xylosidase 3) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
641.7 100.0 62.0 At1g79330 844271 ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5) Metacaspase AtMCPb2/AMC6. Caspase family protein. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain. O.I. C.G. H.G.
636.0 100.0 52.7 At2g23250 816857 UGT84B2 (UDP-glucosyl transferase 84B2) F:UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVFO O.I. C.G. H.G.
628.0 100.0 477.6 At2g02515 814781 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
627.3 100.0 953.0 At3g17150 820972 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
615.5 100.0 106.2 At5g58840 836001 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
608.9 100.0 65.2 At5g58830 836000 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
607.0 100.0 168.2 At4g28700 828988 AMT1 F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPA O.I. C.G. H.G.
606.1 100.0 402.5 At4g32105 829342 galactosyltransferase F:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;P O.I. C.G. H.G.
592.0 100.0 60.7 At2g32770 817838 purple acid phosphatase (PAP13) F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PMOFBA O.I. C.G. H.G.
586.0 100.0 123.0 At4g23080 828407 unknown protein F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
580.4 100.0 322.7 At3g05460 819711 sporozoite surface protein-related F:unknown;P:unknown;C:endomembrane system;MOBP O.I. C.G. H.G.
580.0 100.0 121.2 At1g26620 839202 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB O.I. C.G. H.G.
563.5 100.0 634.1 At2g44540 819062 AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
562.1 100.0 139.1 At3g04100 819565 AGL57 F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
559.9 100.0 49.6 At1g29600 839837 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. C.G. H.G.
531.7 100.0 38.9 At2g35890 818162 CPK25 member of Calcium Dependent Protein Kinase O.I. C.G. H.G.
523.9 100.0 1133.9 At2g30810 817632 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
497.6 100.0 79.0 At1g50950 841517 thioredoxin-related F:unknown;P:cell redox homeostasis;C:unknown;MFOPBV O.I. C.G. H.G.
441.8 100.0 740.7 At3g24510 822044 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
417.3 100.0 183.9 At2g23970 816930 defense-related protein, putative F:unknown;P:defense response;C:endomembrane system;OBAFPMV O.I. C.G. H.G.
416.1 100.0 154.3 At5g23580 832424 CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+ O.I. C.G. H.G.
406.9 100.0 151.3 At1g78710 844207 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
389.2 100.0 84.5 At3g27785 822399 MYB118 putative transcription factor (MYB118) O.I. C.G. H.G.
377.4 100.0 57.6 At5g10440 830908 CYCD4 Encodes a cyclin involved in cell proliferation during stomatal cell lineage development. O.I. C.G. H.G.
375.8 100.0 202.7 At5g24316 832501 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO O.I. C.G. H.G.
375.2 100.0 119.8 At5g04220 830301 SYTC F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
373.2 100.0 97.0 At5g08360 830734 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
368.6 100.0 73.4 At4g31900 829320 chromatin remodeling factor, putative F:in 6 functions;P:chromatin assembly or disassembly;C:chromatin, nucleus;MBOFPVA O.I. C.G. H.G.
364.8 100.0 76.6 At5g13600 831204 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:membrane;PMF O.I. C.G. H.G.
337.8 100.0 282.7 At5g34940 833437 AtGUS3 (Arabidopsis thaliana glucuronidase 3) The protein is predicted (WoLF PSORT program) to be membrane-associated. O.I. C.G. H.G.
330.0 100.0 36.6 At5g56480 835749 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
320.7 100.0 35.5 At3g43660 823468 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
318.9 100.0 372.6 At5g09370 830796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
315.3 100.0 52.6 At2g26050 817146 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;PM O.I. C.G. H.G.
310.5 100.0 111.3 At4g34580 829610 COW1 (CAN OF WORMS1) Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth. O.I. C.G. H.G.
309.1 100.0 87.8 At4g30110 829134 HMA2 encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc O.I. C.G. H.G.
308.6 100.0 53.7 At1g29610 839838 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
308.2 100.0 80.3 At5g40430 834041 MYB22 (myb domain protein 22) Encodes a putative transcription factor (MYB22). O.I. C.G. H.G.
303.9 100.0 50.1 At4g02300 827708 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
284.8 100.0 40.1 At1g64940 842802 CYP89A6 member of CYP89A O.I. C.G. H.G.
282.5 100.0 124.5 At3g14920 820721 unknown protein F:unknown;P:biological_process unknown;C:plasma membrane, vacuole, plant-type cell wall;FPABO O.I. C.G. H.G.
281.1 100.0 35.6 At5g56490 835750 FAD-binding domain-containing protein F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BOFPMA O.I. C.G. H.G.
276.8 100.0 45.0 At5g56200 835719 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV O.I. C.G. H.G.
265.1 100.0 74.4 At5g59190 836037 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:response to cadmium ion, proteolysis;C:cellular_component unknown;BPOFAM O.I. C.G. H.G.
263.6 100.0 69.0 At4g29370 829058 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
262.5 100.0 648.2 At1g77510 844087 ATPDIL1-2 (PDI-LIKE 1-2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. O.I. C.G. H.G.
262.0 100.0 63.0 At2g20110 816530 tesmin/TSO1-like CXC domain-containing protein F:transcription factor activity;P:unknown;C:cellular_component unknown;OMPFBV O.I. C.G. H.G.
259.5 100.0 77.9 At5g61470 836268 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPBFVA O.I. C.G. H.G.
254.3 100.0 87.4 At5g57480 835852 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
251.2 100.0 218.4 At4g23350 828434 unknown protein F:unknown;P:unknown;C:endomembrane system;PFB O.I. C.G. H.G.
249.0 100.0 322.4 At1g78060 844141 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:apoplast, cell wall, chloroplast, plant-type cell wall;BOFPAM O.I. C.G. H.G.
245.7 100.0 172.5 At3g28850 822517 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:plasma membrane;PMOBF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2540.5	100.0	466.6	At4g20800	827828	FAD-binding domain-containing protein	F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
2299.7	100.0	169.8	At3g46840	823837	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
2262.0	100.0	437.7	At4g39650	830119	GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2)	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.	O.I.	C.G.	H.G.
2250.0	100.0	400.8	At1g34410	840344	ARF21 (AUXIN RESPONSE FACTOR 21)	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
2155.0	100.0	746.4	At5g15000	831352	-	Encodes a ECA1 gametogenesis related family protein	O.I.	C.G.	H.G.
1943.9	100.0	257.7	At3g57270	824894	BG1 (BETA-1,3-GLUCANASE 1)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
1871.1	100.0	398.3	At3g17140	820971	invertase inhibitor-related	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1782.4	100.0	235.4	At5g40680	834068	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPOBFA	O.I.	C.G.	H.G.
1715.6	100.0	163.4	At5g39440	833940	SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3)	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
1707.7	100.0	391.2	At2g17750	816284	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
1602.0	100.0	227.0	At2g19500	816469	CKX2 (CYTOKININ OXIDASE 2)	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
1552.5	100.0	161.5	At5g06500	830538	AGL96 (AGAMOUS-LIKE 96)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
1521.0	100.0	735.2	At5g39260	833922	ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
1506.8	100.0	693.0	At1g10190	837557	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
1342.3	100.0	223.5	At4g33830	829525	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPF	O.I.	C.G.	H.G.
1338.2	100.0	135.8	At5g35900	833576	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1330.5	100.0	275.8	At1g56620	842117	pectinesterase inhibitor domain-containing protein	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1310.2	100.0	381.8	At5g25410	832613	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
1223.3	100.0	240.9	At3g12190	820396	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
1218.0	100.0	161.6	At1g64830	842791	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
1217.6	100.0	88.0	At1g34170	840316	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
1207.8	100.0	195.3	At2g30090	817560	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MPBAO	O.I.	C.G.	H.G.
1138.2	100.0	172.8	At5g19270	832047	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
1123.7	100.0	168.3	At5g07260	830617	homeobox protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
1121.6	100.0	165.1	At1g62340	842532	ALE1 (ABNORMAL LEAF-SHAPE 1)	Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plants	O.I.	C.G.	H.G.
1081.1	100.0	348.1	At5g14860	831338	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
1079.0	100.0	330.9	At2g37720	818349	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
1062.0	100.0	122.4	At4g32080	829339	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1049.3	100.0	173.1	At1g22015	838806	DD46	F:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOF	O.I.	C.G.	H.G.
1040.2	100.0	63.9	At3g11920	820365	glutaredoxin-related	F:electron carrier activity, protein disulfide oxidoreductase activity;P:intracellular signaling cascade, cell redox homeostasis;C:cellular_component unknown;BOMPF	O.I.	C.G.	H.G.
1031.9	100.0	345.4	At2g06090	815164	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
1029.6	100.0	683.2	At5g46950	834741	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
933.0	100.0	331.0	At1g09370	837459	enzyme inhibitor/ pectinesterase	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
882.2	100.0	243.3	At1g44130	841016	nucellin protein, putative	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF	O.I.	C.G.	H.G.
859.2	100.0	88.3	At2g34990	818063	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
855.7	100.0	112.9	At5g52330	835309	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFMO	O.I.	C.G.	H.G.
809.4	100.0	766.7	At4g29285	829050	LCR24 (Low-molecular-weight cysteine-rich 24)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	O.I.	C.G.	H.G.
804.6	100.0	142.1	At4g10210	826612	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
797.8	100.0	145.4	At3g10780	820247	emp24/gp25L/p24 family protein	F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO	O.I.	C.G.	H.G.
780.9	100.0	787.4	At5g54220	835510	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
732.3	100.0	465.9	At4g30070	829130	LCR59 (Low-molecular-weight cysteine-rich 59)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
714.3	100.0	104.8	At1g03445	838804	BSU1 (BRI1 SUPPRESSOR 1)	encodes a serine�threonine protein phosphatase with an N-terminal Kelch-repeat domain, which is nuclear localized and expressed preferentially in elongating cells. Genetic evidence suggest that this gene plays a redundant role (along with other members of the same gene family) in modulating growth in response to brassinosteroid.	O.I.	C.G.	H.G.
712.1	100.0	82.2	At1g13680	837929	phospholipase C/ phosphoric diester hydrolase	F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, lipid metabolic process;C:endomembrane system;FPOBM	O.I.	C.G.	H.G.
711.9	100.0	395.8	At3g46860	823839	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
672.2	100.0	147.2	At5g59110	836029	subtilisin-like serine protease-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
658.1	100.0	553.9	At5g46810	834725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
650.5	100.0	899.7	At5g39280	833924	ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
641.8	100.0	711.0	At5g09730	830833	BXL3 (beta-xylosidase 3)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
641.7	100.0	62.0	At1g79330	844271	ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5)	Metacaspase AtMCPb2/AMC6. Caspase family protein. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam domain, PF00656: ICE-like protease (caspase) p20 domain.	O.I.	C.G.	H.G.
636.0	100.0	52.7	At2g23250	816857	UGT84B2 (UDP-glucosyl transferase 84B2)	F:UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVFO	O.I.	C.G.	H.G.
628.0	100.0	477.6	At2g02515	814781	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
627.3	100.0	953.0	At3g17150	820972	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
615.5	100.0	106.2	At5g58840	836001	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
608.9	100.0	65.2	At5g58830	836000	identical protein binding / serine-type endopeptidase	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
607.0	100.0	168.2	At4g28700	828988	AMT1	F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPA	O.I.	C.G.	H.G.
606.1	100.0	402.5	At4g32105	829342	galactosyltransferase	F:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
592.0	100.0	60.7	At2g32770	817838	purple acid phosphatase (PAP13)	F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PMOFBA	O.I.	C.G.	H.G.
586.0	100.0	123.0	At4g23080	828407	unknown protein	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
580.4	100.0	322.7	At3g05460	819711	sporozoite surface protein-related	F:unknown;P:unknown;C:endomembrane system;MOBP	O.I.	C.G.	H.G.
580.0	100.0	121.2	At1g26620	839202	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMB	O.I.	C.G.	H.G.
563.5	100.0	634.1	At2g44540	819062	AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
562.1	100.0	139.1	At3g04100	819565	AGL57	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
559.9	100.0	49.6	At1g29600	839837	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
531.7	100.0	38.9	At2g35890	818162	CPK25	member of Calcium Dependent Protein Kinase	O.I.	C.G.	H.G.
523.9	100.0	1133.9	At2g30810	817632	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
497.6	100.0	79.0	At1g50950	841517	thioredoxin-related	F:unknown;P:cell redox homeostasis;C:unknown;MFOPBV	O.I.	C.G.	H.G.
441.8	100.0	740.7	At3g24510	822044	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
417.3	100.0	183.9	At2g23970	816930	defense-related protein, putative	F:unknown;P:defense response;C:endomembrane system;OBAFPMV	O.I.	C.G.	H.G.
416.1	100.0	154.3	At5g23580	832424	CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9)	unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+	O.I.	C.G.	H.G.
406.9	100.0	151.3	At1g78710	844207	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
389.2	100.0	84.5	At3g27785	822399	MYB118	putative transcription factor (MYB118)	O.I.	C.G.	H.G.
377.4	100.0	57.6	At5g10440	830908	CYCD4	Encodes a cyclin involved in cell proliferation during stomatal cell lineage development.	O.I.	C.G.	H.G.
375.8	100.0	202.7	At5g24316	832501	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO	O.I.	C.G.	H.G.
375.2	100.0	119.8	At5g04220	830301	SYTC	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
373.2	100.0	97.0	At5g08360	830734	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
368.6	100.0	73.4	At4g31900	829320	chromatin remodeling factor, putative	F:in 6 functions;P:chromatin assembly or disassembly;C:chromatin, nucleus;MBOFPVA	O.I.	C.G.	H.G.
364.8	100.0	76.6	At5g13600	831204	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:membrane;PMF	O.I.	C.G.	H.G.
337.8	100.0	282.7	At5g34940	833437	AtGUS3 (Arabidopsis thaliana glucuronidase 3)	The protein is predicted (WoLF PSORT program) to be membrane-associated.	O.I.	C.G.	H.G.
330.0	100.0	36.6	At5g56480	835749	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
320.7	100.0	35.5	At3g43660	823468	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
318.9	100.0	372.6	At5g09370	830796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
315.3	100.0	52.6	At2g26050	817146	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;PM	O.I.	C.G.	H.G.
310.5	100.0	111.3	At4g34580	829610	COW1 (CAN OF WORMS1)	Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.	O.I.	C.G.	H.G.
309.1	100.0	87.8	At4g30110	829134	HMA2	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	O.I.	C.G.	H.G.
308.6	100.0	53.7	At1g29610	839838	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
308.2	100.0	80.3	At5g40430	834041	MYB22 (myb domain protein 22)	Encodes a putative transcription factor (MYB22).	O.I.	C.G.	H.G.
303.9	100.0	50.1	At4g02300	827708	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
284.8	100.0	40.1	At1g64940	842802	CYP89A6	member of CYP89A	O.I.	C.G.	H.G.
282.5	100.0	124.5	At3g14920	820721	unknown protein	F:unknown;P:biological_process unknown;C:plasma membrane, vacuole, plant-type cell wall;FPABO	O.I.	C.G.	H.G.
281.1	100.0	35.6	At5g56490	835750	FAD-binding domain-containing protein	F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BOFPMA	O.I.	C.G.	H.G.
276.8	100.0	45.0	At5g56200	835719	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MPOFBV	O.I.	C.G.	H.G.
265.1	100.0	74.4	At5g59190	836037	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:response to cadmium ion, proteolysis;C:cellular_component unknown;BPOFAM	O.I.	C.G.	H.G.
263.6	100.0	69.0	At4g29370	829058	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
262.5	100.0	648.2	At1g77510	844087	ATPDIL1-2 (PDI-LIKE 1-2)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.	O.I.	C.G.	H.G.
262.0	100.0	63.0	At2g20110	816530	tesmin/TSO1-like CXC domain-containing protein	F:transcription factor activity;P:unknown;C:cellular_component unknown;OMPFBV	O.I.	C.G.	H.G.
259.5	100.0	77.9	At5g61470	836268	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPBFVA	O.I.	C.G.	H.G.
254.3	100.0	87.4	At5g57480	835852	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
251.2	100.0	218.4	At4g23350	828434	unknown protein	F:unknown;P:unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
249.0	100.0	322.4	At1g78060	844141	glycosyl hydrolase family 3 protein	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:apoplast, cell wall, chloroplast, plant-type cell wall;BOFPAM	O.I.	C.G.	H.G.
245.7	100.0	172.5	At3g28850	822517	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:plasma membrane;PMOBF	O.I.	C.G.	H.G.

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GSM ID	GSM284389
Assay name	Arabidopsis GMPE2
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284389 Assay name Arabidopsis GMPE2 GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284389

Assay name Arabidopsis GMPE2

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.