Microarray experiments to specifically-expressed genes

GSM ID GSM284387
Assay name Arabidopsis GSUS4b
GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1673.2100.0261.7At2g18340816349late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFVAO.I.C.G.H.G.
1426.3100.098.4At3g62320825405nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
1373.4100.085.7At1g31400840030meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.C.G.H.G.
1245.7100.0569.5At2g28680817417cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
1180.3100.0345.5At3g48670824027XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:response to cadmium ion;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
1068.3100.089.3At4g31760829304peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
1018.8100.0249.9At3g10100820171transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
997.8100.0475.2At3g24250822012glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
983.5100.0223.1At5g14690831321unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVMO.I.C.G.H.G.
863.6100.0348.8At1g13590837920ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.O.I.C.G.H.G.
634.6100.0273.0At1g09370837459enzyme inhibitor/ pectinesteraseF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
623.7100.0222.8At5g61190836240zinc finger protein-relatedF:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAVO.I.C.G.H.G.
601.6100.0269.7At1g15910838161XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
592.6100.0115.9At1g67590843080remorin family proteinF:DNA binding;P:biological_process unknown;C:nucleus;OPBMFVAO.I.C.G.H.G.
571.5100.0253.1At5g14860831338transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
570.7100.0315.0At1g04645839459self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
525.9100.0194.9At3g52780824444PAP20F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFAO.I.C.G.H.G.
489.5100.092.5At5g56320835731ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
465.5100.086.9At3g62480825422transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
451.1100.0131.3At5g04220830301SYTCF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOO.I.C.G.H.G.
433.4100.0392.5At5g39260833922ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
429.2100.0108.2At5g04660830343CYP77A4encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
417.4100.0371.1At3g05600819726epoxide hydrolase, putativeF:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFAO.I.C.G.H.G.
417.1100.088.5At1g11420837684agenet domain-containing proteinF:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFVO.I.C.G.H.G.
404.7100.0359.1At1g10190837557unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
395.6100.0256.5At5g58730835987pfkB-type carbohydrate kinase family proteinF:kinase activity;P:biological_process unknown;C:unknown;BOPAFMVO.I.C.G.H.G.
384.8100.0180.5At4g39650830119GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.O.I.C.G.H.G.
378.9100.076.7At1g205008386384-coumarate-CoA ligaseF:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
376.1100.0311.8At5g15000831352-Encodes a ECA1 gametogenesis related family proteinO.I.C.G.H.G.
366.4100.098.5At3g10780820247emp24/gp25L/p24 family proteinF:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPOO.I.C.G.H.G.
364.4100.085.4At2g47230819336agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
362.1100.0116.1At4g33830829525catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPFO.I.C.G.H.G.
332.1100.0124.3At3g51750824338unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
323.3100.082.3At2g30560817605glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.C.G.H.G.
321.0100.069.5At4g00390828200transcription regulatorF:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVAO.I.C.G.H.G.
311.2100.0149.1At1g34410840344ARF21 (AUXIN RESPONSE FACTOR 21)F:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
306.1100.0471.5At4g29285829050LCR24 (Low-molecular-weight cysteine-rich 24)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.C.G.H.G.
294.1100.099.8At5g63700836490zinc finger (C3HC4 type RING finger) family proteinF:protein binding, DNA binding, zinc ion binding;P:histone modification, transcription initiation;C:nucleus;MOPFBVO.I.C.G.H.G.
290.2100.032.4At2g18650816380MEE16 (maternal effect embryo arrest 16)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:chloroplast;PMOFVO.I.C.G.H.G.
289.1100.0179.3At5g25410832613unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
287.9100.090.8At3g26790822293FUS3 (FUSCA 3)Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.O.I.C.G.H.G.
286.9100.0156.0At3g17140820971invertase inhibitor-relatedF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
285.4100.059.6At4g37360829890CYP81D2member of CYP81DO.I.C.G.H.G.
273.6100.098.0At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
268.7100.095.8At3g57270824894BG1 (BETA-1,3-GLUCANASE 1)encodes a member of glycosyl hydrolase family 17O.I.C.G.H.G.
265.0100.0574.2At5g39280833924ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
262.6100.0802.7At2g30810817632gibberellin-regulated family proteinF:unknown;P:response to gibberellin stimulus;C:endomembrane system;PO.I.C.G.H.G.
260.6100.0371.5At4g32870829423unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
257.6100.0104.2At2g30470817597HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50ÁM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.O.I.C.G.H.G.
257.3100.0172.5At2g06090815164self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
257.2100.065.7At5g06500830538AGL96 (AGAMOUS-LIKE 96)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
257.1100.0341.4At5g46950834741invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
249.7100.0258.4At4g32105829342galactosyltransferaseF:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;PO.I.C.G.H.G.
249.3100.0119.4At1g56620842117pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
247.7100.096.1At1g14790838044RDR1 (RNA-DEPENDENT RNA POLYMERASE 1)Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.O.I.C.G.H.G.
236.8100.0227.2At2g34870818052MEE26 (maternal effect embryo arrest 26)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBAO.I.C.G.H.G.
235.9100.0584.4At3g17150820972enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
235.6100.0113.8At4g00820828002iqd17 (IQ-domain 17)F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVBO.I.C.G.H.G.
235.2100.0284.3At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
234.7100.083.9At5g57480835852AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
230.5100.0405.6At2g44540819062AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
224.9100.072.3At3g29375822597XH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.C.G.H.G.
223.6100.074.4At3g15990820844SULTR3Encodes sulfate transporter Sultr3;4.O.I.C.G.H.G.
221.4100.087.3At3g04100819565AGL57F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOO.I.C.G.H.G.
220.5100.082.8At5g13790831224AGL15 (AGAMOUS-LIKE 15)AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.O.I.C.G.H.G.
220.4100.073.7At2g36890818262RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. "O.I.C.G.H.G.
219.1100.073.6At5g41610834163ATCHX18member of Putative Na+/H+ antiporter familyO.I.C.G.H.G.
218.5100.082.7At1g53690841806DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putativeProtein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.O.I.C.G.H.G.
216.8100.070.7At4g31000829227calmodulin-binding proteinF:calmodulin binding;P:unknown;C:unknown;PMO.I.C.G.H.G.
216.3100.0178.4At2g13690815853PRLI-interacting factor, putativeF:transcription regulator activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
216.1100.0136.1At4g20800827828FAD-binding domain-containing proteinF:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
215.3100.068.6At1g04030839326unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVAO.I.C.G.H.G.
213.5100.0109.1At3g62300825403agenet domain-containing proteinF:RNA binding;P:unknown;C:cellular_component unknown;PMOBO.I.C.G.H.G.
211.8100.0100.2At1g71870843518MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
211.2100.0456.2At1g13710837932CYP78A5member of CYP78AO.I.C.G.H.G.
210.7100.0197.9At1g04610839474flavin-containing monooxygenase / FMO (YUCCA3)F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPAO.I.C.G.H.G.
209.2100.0281.6At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
207.2100.0169.5At5g23890832454-F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAVO.I.C.G.H.G.
205.0100.0128.9At2g23970816930defense-related protein, putativeF:unknown;P:defense response;C:endomembrane system;OBAFPMVO.I.C.G.H.G.
204.8100.0108.7At5g23570832422SGS3 (SUPPRESSOR OF GENE SILENCING 3)Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.O.I.C.G.H.G.
194.2100.0206.7At3g46860823839serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
187.7100.049.4At3g28030822427UVH3 (ULTRAVIOLET HYPERSENSITIVE 3)Required for repair of pyrimidine-pyrimidinone (6-4) dimers.O.I.C.G.H.G.
180.5100.0220.4At4g24040828504TRE1 (TREHALASE 1)Encodes a trehalase, member of Glycoside Hydrolase Family 37.O.I.C.G.H.G.
180.4100.0104.7At5g54280835516ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)Type VII myosin geneO.I.C.G.H.G.
178.2100.039.1At5g66670836799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBO.I.C.G.H.G.
176.7100.0646.5At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
176.7100.0125.8At2g17750816284unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.C.G.H.G.
174.6100.0151.6At5g04540830333phosphatase/ protein tyrosine phosphataseF:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:unknown;MOFPO.I.C.G.H.G.
172.6100.047.3At3g57670824936NTT (NO TRANSMITTING TRACT)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:pollen tube growth, regulation of transcription;C:intracellular, chloroplast;MPOFVBAO.I.C.G.H.G.
171.8100.0106.2At4g00270827164DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:chloroplast;POMO.I.C.G.H.G.
169.9100.028.9At2g36550818228-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVOO.I.C.G.H.G.
168.4100.073.6At2g19500816469CKX2 (CYTOKININ OXIDASE 2)It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.O.I.C.G.H.G.
167.3100.050.5At5g46640834707DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBMOFO.I.C.G.H.G.
166.5100.0278.6At5g46810834725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
166.3100.0113.7At5g50740835146metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
164.399.946.6At1g63020842605NRPD1A (NUCLEAR RNA POLYMERASE D 1A)Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing.O.I.C.G.H.G.
163.999.970.7At4g22560828352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
163.499.9450.5At3g24510822044-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
163.099.9165.9At1g48470841268GLN1Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots.O.I.C.G.H.G.
161.399.9135.0At5g02550831052unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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