CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM284387

Assay name Arabidopsis GSUS4b

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1673.2 100.0 261.7 At2g18340 816349 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFVA O.I. C.G. H.G.
1426.3 100.0 98.4 At3g62320 825405 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
1373.4 100.0 85.7 At1g31400 840030 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
1245.7 100.0 569.5 At2g28680 817417 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
1180.3 100.0 345.5 At3g48670 824027 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:response to cadmium ion;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
1068.3 100.0 89.3 At4g31760 829304 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
1018.8 100.0 249.9 At3g10100 820171 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
997.8 100.0 475.2 At3g24250 822012 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
983.5 100.0 223.1 At5g14690 831321 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVM O.I. C.G. H.G.
863.6 100.0 348.8 At1g13590 837920 ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR) Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. O.I. C.G. H.G.
634.6 100.0 273.0 At1g09370 837459 enzyme inhibitor/ pectinesterase F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
623.7 100.0 222.8 At5g61190 836240 zinc finger protein-related F:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAV O.I. C.G. H.G.
601.6 100.0 269.7 At1g15910 838161 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
592.6 100.0 115.9 At1g67590 843080 remorin family protein F:DNA binding;P:biological_process unknown;C:nucleus;OPBMFVA O.I. C.G. H.G.
571.5 100.0 253.1 At5g14860 831338 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
570.7 100.0 315.0 At1g04645 839459 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
525.9 100.0 194.9 At3g52780 824444 PAP20 F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA O.I. C.G. H.G.
489.5 100.0 92.5 At5g56320 835731 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
465.5 100.0 86.9 At3g62480 825422 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
451.1 100.0 131.3 At5g04220 830301 SYTC F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
433.4 100.0 392.5 At5g39260 833922 ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
429.2 100.0 108.2 At5g04660 830343 CYP77A4 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
417.4 100.0 371.1 At3g05600 819726 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
417.1 100.0 88.5 At1g11420 837684 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFV O.I. C.G. H.G.
404.7 100.0 359.1 At1g10190 837557 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
395.6 100.0 256.5 At5g58730 835987 pfkB-type carbohydrate kinase family protein F:kinase activity;P:biological_process unknown;C:unknown;BOPAFMV O.I. C.G. H.G.
384.8 100.0 180.5 At4g39650 830119 GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2) The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation. O.I. C.G. H.G.
378.9 100.0 76.7 At1g20500 838638 4-coumarate-CoA ligase F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
376.1 100.0 311.8 At5g15000 831352 - Encodes a ECA1 gametogenesis related family protein O.I. C.G. H.G.
366.4 100.0 98.5 At3g10780 820247 emp24/gp25L/p24 family protein F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO O.I. C.G. H.G.
364.4 100.0 85.4 At2g47230 819336 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
362.1 100.0 116.1 At4g33830 829525 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPF O.I. C.G. H.G.
332.1 100.0 124.3 At3g51750 824338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
323.3 100.0 82.3 At2g30560 817605 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. C.G. H.G.
321.0 100.0 69.5 At4g00390 828200 transcription regulator F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA O.I. C.G. H.G.
311.2 100.0 149.1 At1g34410 840344 ARF21 (AUXIN RESPONSE FACTOR 21) F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
306.1 100.0 471.5 At4g29285 829050 LCR24 (Low-molecular-weight cysteine-rich 24) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. O.I. C.G. H.G.
294.1 100.0 99.8 At5g63700 836490 zinc finger (C3HC4 type RING finger) family protein F:protein binding, DNA binding, zinc ion binding;P:histone modification, transcription initiation;C:nucleus;MOPFBV O.I. C.G. H.G.
290.2 100.0 32.4 At2g18650 816380 MEE16 (maternal effect embryo arrest 16) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:chloroplast;PMOFV O.I. C.G. H.G.
289.1 100.0 179.3 At5g25410 832613 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
287.9 100.0 90.8 At3g26790 822293 FUS3 (FUSCA 3) Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed. O.I. C.G. H.G.
286.9 100.0 156.0 At3g17140 820971 invertase inhibitor-related F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
285.4 100.0 59.6 At4g37360 829890 CYP81D2 member of CYP81D O.I. C.G. H.G.
273.6 100.0 98.0 At1g60970 842388 clathrin adaptor complex small chain family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO O.I. C.G. H.G.
268.7 100.0 95.8 At3g57270 824894 BG1 (BETA-1,3-GLUCANASE 1) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
265.0 100.0 574.2 At5g39280 833924 ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
262.6 100.0 802.7 At2g30810 817632 gibberellin-regulated family protein F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
260.6 100.0 371.5 At4g32870 829423 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
257.6 100.0 104.2 At2g30470 817597 HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2) HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50�M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain. O.I. C.G. H.G.
257.3 100.0 172.5 At2g06090 815164 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
257.2 100.0 65.7 At5g06500 830538 AGL96 (AGAMOUS-LIKE 96) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
257.1 100.0 341.4 At5g46950 834741 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
249.7 100.0 258.4 At4g32105 829342 galactosyltransferase F:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;P O.I. C.G. H.G.
249.3 100.0 119.4 At1g56620 842117 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
247.7 100.0 96.1 At1g14790 838044 RDR1 (RNA-DEPENDENT RNA POLYMERASE 1) Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. O.I. C.G. H.G.
236.8 100.0 227.2 At2g34870 818052 MEE26 (maternal effect embryo arrest 26) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA O.I. C.G. H.G.
235.9 100.0 584.4 At3g17150 820972 enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
235.6 100.0 113.8 At4g00820 828002 iqd17 (IQ-domain 17) F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVB O.I. C.G. H.G.
235.2 100.0 284.3 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
234.7 100.0 83.9 At5g57480 835852 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
230.5 100.0 405.6 At2g44540 819062 AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
224.9 100.0 72.3 At3g29375 822597 XH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
223.6 100.0 74.4 At3g15990 820844 SULTR3 Encodes sulfate transporter Sultr3;4. O.I. C.G. H.G.
221.4 100.0 87.3 At3g04100 819565 AGL57 F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
220.5 100.0 82.8 At5g13790 831224 AGL15 (AGAMOUS-LIKE 15) AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation. O.I. C.G. H.G.
220.4 100.0 73.7 At2g36890 818262 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) "Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. " O.I. C.G. H.G.
219.1 100.0 73.6 At5g41610 834163 ATCHX18 member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
218.5 100.0 82.7 At1g53690 841806 DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. O.I. C.G. H.G.
216.8 100.0 70.7 At4g31000 829227 calmodulin-binding protein F:calmodulin binding;P:unknown;C:unknown;PM O.I. C.G. H.G.
216.3 100.0 178.4 At2g13690 815853 PRLI-interacting factor, putative F:transcription regulator activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
216.1 100.0 136.1 At4g20800 827828 FAD-binding domain-containing protein F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM O.I. C.G. H.G.
215.3 100.0 68.6 At1g04030 839326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
213.5 100.0 109.1 At3g62300 825403 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PMOB O.I. C.G. H.G.
211.8 100.0 100.2 At1g71870 843518 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
211.2 100.0 456.2 At1g13710 837932 CYP78A5 member of CYP78A O.I. C.G. H.G.
210.7 100.0 197.9 At1g04610 839474 flavin-containing monooxygenase / FMO (YUCCA3) F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPA O.I. C.G. H.G.
209.2 100.0 281.6 At2g25650 817106 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA O.I. C.G. H.G.
207.2 100.0 169.5 At5g23890 832454 - F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV O.I. C.G. H.G.
205.0 100.0 128.9 At2g23970 816930 defense-related protein, putative F:unknown;P:defense response;C:endomembrane system;OBAFPMV O.I. C.G. H.G.
204.8 100.0 108.7 At5g23570 832422 SGS3 (SUPPRESSOR OF GENE SILENCING 3) Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway. O.I. C.G. H.G.
194.2 100.0 206.7 At3g46860 823839 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
187.7 100.0 49.4 At3g28030 822427 UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) Required for repair of pyrimidine-pyrimidinone (6-4) dimers. O.I. C.G. H.G.
180.5 100.0 220.4 At4g24040 828504 TRE1 (TREHALASE 1) Encodes a trehalase, member of Glycoside Hydrolase Family 37. O.I. C.G. H.G.
180.4 100.0 104.7 At5g54280 835516 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) Type VII myosin gene O.I. C.G. H.G.
178.2 100.0 39.1 At5g66670 836799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB O.I. C.G. H.G.
176.7 100.0 646.5 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
176.7 100.0 125.8 At2g17750 816284 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB O.I. C.G. H.G.
174.6 100.0 151.6 At5g04540 830333 phosphatase/ protein tyrosine phosphatase F:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:unknown;MOFP O.I. C.G. H.G.
172.6 100.0 47.3 At3g57670 824936 NTT (NO TRANSMITTING TRACT) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:pollen tube growth, regulation of transcription;C:intracellular, chloroplast;MPOFVBA O.I. C.G. H.G.
171.8 100.0 106.2 At4g00270 827164 DNA-binding storekeeper protein-related F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM O.I. C.G. H.G.
169.9 100.0 28.9 At2g36550 818228 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVO O.I. C.G. H.G.
168.4 100.0 73.6 At2g19500 816469 CKX2 (CYTOKININ OXIDASE 2) It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. O.I. C.G. H.G.
167.3 100.0 50.5 At5g46640 834707 DNA-binding family protein F:DNA binding;P:unknown;C:unknown;PBMOF O.I. C.G. H.G.
166.5 100.0 278.6 At5g46810 834725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
166.3 100.0 113.7 At5g50740 835146 metal ion binding F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV O.I. C.G. H.G.
164.3 99.9 46.6 At1g63020 842605 NRPD1A (NUCLEAR RNA POLYMERASE D 1A) Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. O.I. C.G. H.G.
163.9 99.9 70.7 At4g22560 828352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
163.4 99.9 450.5 At3g24510 822044 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
163.0 99.9 165.9 At1g48470 841268 GLN1 Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots. O.I. C.G. H.G.
161.3 99.9 135.0 At5g02550 831052 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1673.2	100.0	261.7	At2g18340	816349	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFVA	O.I.	C.G.	H.G.
1426.3	100.0	98.4	At3g62320	825405	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
1373.4	100.0	85.7	At1g31400	840030	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
1245.7	100.0	569.5	At2g28680	817417	cupin family protein	F:nutrient reservoir activity;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
1180.3	100.0	345.5	At3g48670	824027	XH/XS domain-containing protein / XS zinc finger domain-containing protein	F:molecular_function unknown;P:response to cadmium ion;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
1068.3	100.0	89.3	At4g31760	829304	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
1018.8	100.0	249.9	At3g10100	820171	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
997.8	100.0	475.2	At3g24250	822012	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
983.5	100.0	223.1	At5g14690	831321	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVM	O.I.	C.G.	H.G.
863.6	100.0	348.8	At1g13590	837920	ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR)	Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus.	O.I.	C.G.	H.G.
634.6	100.0	273.0	At1g09370	837459	enzyme inhibitor/ pectinesterase	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
623.7	100.0	222.8	At5g61190	836240	zinc finger protein-related	F:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAV	O.I.	C.G.	H.G.
601.6	100.0	269.7	At1g15910	838161	XH/XS domain-containing protein / XS zinc finger domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
592.6	100.0	115.9	At1g67590	843080	remorin family protein	F:DNA binding;P:biological_process unknown;C:nucleus;OPBMFVA	O.I.	C.G.	H.G.
571.5	100.0	253.1	At5g14860	831338	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
570.7	100.0	315.0	At1g04645	839459	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
525.9	100.0	194.9	At3g52780	824444	PAP20	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA	O.I.	C.G.	H.G.
489.5	100.0	92.5	At5g56320	835731	ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
465.5	100.0	86.9	At3g62480	825422	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
451.1	100.0	131.3	At5g04220	830301	SYTC	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
433.4	100.0	392.5	At5g39260	833922	ATEXPA21 (ARABIDOPSIS THALIANA EXPANSIN A21)	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
429.2	100.0	108.2	At5g04660	830343	CYP77A4	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
417.4	100.0	371.1	At3g05600	819726	epoxide hydrolase, putative	F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
417.1	100.0	88.5	At1g11420	837684	agenet domain-containing protein	F:RNA binding;P:unknown;C:cellular_component unknown;PMOBAFV	O.I.	C.G.	H.G.
404.7	100.0	359.1	At1g10190	837557	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
395.6	100.0	256.5	At5g58730	835987	pfkB-type carbohydrate kinase family protein	F:kinase activity;P:biological_process unknown;C:unknown;BOPAFMV	O.I.	C.G.	H.G.
384.8	100.0	180.5	At4g39650	830119	GGT2 (GAMMA-GLUTAMYL TRANSPEPTIDASE 2)	The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the apoplast of young siliques (within the ovules of the carpel) and is involved in the degradation of glutathione. The encoded enzyme also acts as part of a GSH pumping gamma-glutamyl cycle in this tissue and may also be involved in gamma-glutamyl amino acid formation.	O.I.	C.G.	H.G.
378.9	100.0	76.7	At1g20500	838638	4-coumarate-CoA ligase	F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
376.1	100.0	311.8	At5g15000	831352	-	Encodes a ECA1 gametogenesis related family protein	O.I.	C.G.	H.G.
366.4	100.0	98.5	At3g10780	820247	emp24/gp25L/p24 family protein	F:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPO	O.I.	C.G.	H.G.
364.4	100.0	85.4	At2g47230	819336	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
362.1	100.0	116.1	At4g33830	829525	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BMPF	O.I.	C.G.	H.G.
332.1	100.0	124.3	At3g51750	824338	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
323.3	100.0	82.3	At2g30560	817605	glycine-rich protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	C.G.	H.G.
321.0	100.0	69.5	At4g00390	828200	transcription regulator	F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA	O.I.	C.G.	H.G.
311.2	100.0	149.1	At1g34410	840344	ARF21 (AUXIN RESPONSE FACTOR 21)	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
306.1	100.0	471.5	At4g29285	829050	LCR24 (Low-molecular-weight cysteine-rich 24)	Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.	O.I.	C.G.	H.G.
294.1	100.0	99.8	At5g63700	836490	zinc finger (C3HC4 type RING finger) family protein	F:protein binding, DNA binding, zinc ion binding;P:histone modification, transcription initiation;C:nucleus;MOPFBV	O.I.	C.G.	H.G.
290.2	100.0	32.4	At2g18650	816380	MEE16 (maternal effect embryo arrest 16)	F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:chloroplast;PMOFV	O.I.	C.G.	H.G.
289.1	100.0	179.3	At5g25410	832613	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
287.9	100.0	90.8	At3g26790	822293	FUS3 (FUSCA 3)	Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed.	O.I.	C.G.	H.G.
286.9	100.0	156.0	At3g17140	820971	invertase inhibitor-related	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
285.4	100.0	59.6	At4g37360	829890	CYP81D2	member of CYP81D	O.I.	C.G.	H.G.
273.6	100.0	98.0	At1g60970	842388	clathrin adaptor complex small chain family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO	O.I.	C.G.	H.G.
268.7	100.0	95.8	At3g57270	824894	BG1 (BETA-1,3-GLUCANASE 1)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
265.0	100.0	574.2	At5g39280	833924	ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
262.6	100.0	802.7	At2g30810	817632	gibberellin-regulated family protein	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
260.6	100.0	371.5	At4g32870	829423	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
257.6	100.0	104.2	At2g30470	817597	HSI2 (HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE GENE 2)	HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50�M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.	O.I.	C.G.	H.G.
257.3	100.0	172.5	At2g06090	815164	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
257.2	100.0	65.7	At5g06500	830538	AGL96 (AGAMOUS-LIKE 96)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
257.1	100.0	341.4	At5g46950	834741	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
249.7	100.0	258.4	At4g32105	829342	galactosyltransferase	F:galactosyltransferase activity;P:protein amino acid glycosylation;C:endomembrane system, membrane;P	O.I.	C.G.	H.G.
249.3	100.0	119.4	At1g56620	842117	pectinesterase inhibitor domain-containing protein	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
247.7	100.0	96.1	At1g14790	838044	RDR1 (RNA-DEPENDENT RNA POLYMERASE 1)	Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs.	O.I.	C.G.	H.G.
236.8	100.0	227.2	At2g34870	818052	MEE26 (maternal effect embryo arrest 26)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MPOVFBA	O.I.	C.G.	H.G.
235.9	100.0	584.4	At3g17150	820972	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
235.6	100.0	113.8	At4g00820	828002	iqd17 (IQ-domain 17)	F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVB	O.I.	C.G.	H.G.
235.2	100.0	284.3	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
234.7	100.0	83.9	At5g57480	835852	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
230.5	100.0	405.6	At2g44540	819062	AtGH9B9 (Arabidopsis thaliana glycosyl hydrolase 9B9)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
224.9	100.0	72.3	At3g29375	822597	XH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
223.6	100.0	74.4	At3g15990	820844	SULTR3	Encodes sulfate transporter Sultr3;4.	O.I.	C.G.	H.G.
221.4	100.0	87.3	At3g04100	819565	AGL57	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
220.5	100.0	82.8	At5g13790	831224	AGL15 (AGAMOUS-LIKE 15)	AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.	O.I.	C.G.	H.G.
220.4	100.0	73.7	At2g36890	818262	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. "	O.I.	C.G.	H.G.
219.1	100.0	73.6	At5g41610	834163	ATCHX18	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
218.5	100.0	82.7	At1g53690	841806	DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative	Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12.	O.I.	C.G.	H.G.
216.8	100.0	70.7	At4g31000	829227	calmodulin-binding protein	F:calmodulin binding;P:unknown;C:unknown;PM	O.I.	C.G.	H.G.
216.3	100.0	178.4	At2g13690	815853	PRLI-interacting factor, putative	F:transcription regulator activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
216.1	100.0	136.1	At4g20800	827828	FAD-binding domain-containing protein	F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM	O.I.	C.G.	H.G.
215.3	100.0	68.6	At1g04030	839326	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
213.5	100.0	109.1	At3g62300	825403	agenet domain-containing protein	F:RNA binding;P:unknown;C:cellular_component unknown;PMOB	O.I.	C.G.	H.G.
211.8	100.0	100.2	At1g71870	843518	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
211.2	100.0	456.2	At1g13710	837932	CYP78A5	member of CYP78A	O.I.	C.G.	H.G.
210.7	100.0	197.9	At1g04610	839474	flavin-containing monooxygenase / FMO (YUCCA3)	F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPA	O.I.	C.G.	H.G.
209.2	100.0	281.6	At2g25650	817106	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVA	O.I.	C.G.	H.G.
207.2	100.0	169.5	At5g23890	832454	-	F:unknown;P:unknown;C:mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope;MOBFPAV	O.I.	C.G.	H.G.
205.0	100.0	128.9	At2g23970	816930	defense-related protein, putative	F:unknown;P:defense response;C:endomembrane system;OBAFPMV	O.I.	C.G.	H.G.
204.8	100.0	108.7	At5g23570	832422	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.	O.I.	C.G.	H.G.
194.2	100.0	206.7	At3g46860	823839	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
187.7	100.0	49.4	At3g28030	822427	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3)	Required for repair of pyrimidine-pyrimidinone (6-4) dimers.	O.I.	C.G.	H.G.
180.5	100.0	220.4	At4g24040	828504	TRE1 (TREHALASE 1)	Encodes a trehalase, member of Glycoside Hydrolase Family 37.	O.I.	C.G.	H.G.
180.4	100.0	104.7	At5g54280	835516	ATM2 (ARABIDOPSIS THALIANA MYOSIN 2)	Type VII myosin gene	O.I.	C.G.	H.G.
178.2	100.0	39.1	At5g66670	836799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB	O.I.	C.G.	H.G.
176.7	100.0	646.5	At3g17160	820973	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
176.7	100.0	125.8	At2g17750	816284	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PFB	O.I.	C.G.	H.G.
174.6	100.0	151.6	At5g04540	830333	phosphatase/ protein tyrosine phosphatase	F:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:unknown;MOFP	O.I.	C.G.	H.G.
172.6	100.0	47.3	At3g57670	824936	NTT (NO TRANSMITTING TRACT)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:pollen tube growth, regulation of transcription;C:intracellular, chloroplast;MPOFVBA	O.I.	C.G.	H.G.
171.8	100.0	106.2	At4g00270	827164	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:chloroplast;POM	O.I.	C.G.	H.G.
169.9	100.0	28.9	At2g36550	818228	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PVO	O.I.	C.G.	H.G.
168.4	100.0	73.6	At2g19500	816469	CKX2 (CYTOKININ OXIDASE 2)	It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.	O.I.	C.G.	H.G.
167.3	100.0	50.5	At5g46640	834707	DNA-binding family protein	F:DNA binding;P:unknown;C:unknown;PBMOF	O.I.	C.G.	H.G.
166.5	100.0	278.6	At5g46810	834725	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
166.3	100.0	113.7	At5g50740	835146	metal ion binding	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFV	O.I.	C.G.	H.G.
164.3	99.9	46.6	At1g63020	842605	NRPD1A (NUCLEAR RNA POLYMERASE D 1A)	Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing.	O.I.	C.G.	H.G.
163.9	99.9	70.7	At4g22560	828352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
163.4	99.9	450.5	At3g24510	822044	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
163.0	99.9	165.9	At1g48470	841268	GLN1	Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots.	O.I.	C.G.	H.G.
161.3	99.9	135.0	At5g02550	831052	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM284387
Assay name	Arabidopsis GSUS4b
GSE experiment	GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Microarray experiments to specifically-expressed genes

GSM ID GSM284387 Assay name Arabidopsis GSUS4b GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

GSM ID GSM284387

Assay name Arabidopsis GSUS4b

GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.