Microarray experiments to specifically-expressed genes

GSM ID GSM284385
Assay name Arabidopsis GEP6
GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
493.8100.0321.4At3g57930824962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVO.I.C.G.H.G.
479.1100.0526.1At1g72440843576EDA25 (embryo sac development arrest 25)F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVAO.I.C.G.H.G.
406.4100.0384.0At5g60030836125unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
382.3100.0174.4At5g61190836240zinc finger protein-relatedF:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAVO.I.C.G.H.G.
364.7100.0928.7At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
360.9100.025.2At1g14687838033AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO.I.C.G.H.G.
358.1100.0159.5At3g51270824290ATP binding / catalytic/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
353.3100.0213.3At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.C.G.H.G.
350.5100.0139.3At1g72390843571unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
332.8100.0155.4At1g17140838284tropomyosin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
331.3100.0382.4At3g5866082503560S ribosomal protein-relatedF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAVO.I.C.G.H.G.
329.0100.062.8At4g29940829117PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A)Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.O.I.C.G.H.G.
321.3100.0112.0At3g44050823523kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.C.G.H.G.
313.4100.0437.2At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
312.9100.0125.0At3g14900820719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVAO.I.C.G.H.G.
309.7100.0256.0At2g40650818660pre-mRNA splicing factor PRP38 family proteinF:binding;P:RNA processing;C:cellular_component unknown;MBOFPVAO.I.C.G.H.G.
308.8100.068.6At5g46640834707DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBMOFO.I.C.G.H.G.
304.8100.0120.2At1g71870843518MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
290.9100.0154.7At4g31360829263selenium bindingF:selenium binding;P:cell redox homeostasis;C:unknown;MOPFBO.I.C.G.H.G.
286.8100.0272.9At1g15940838164bindingF:binding;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
263.7100.0121.5At3g06010819772ATCHR12Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.O.I.C.G.H.G.
262.6100.0158.6At1g50300841452TAF15 (TBP-associated factor 15)F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MOPFBVAO.I.C.G.H.G.
253.6100.0546.3At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.H.G.
251.8100.0174.7At2g07739815412-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
231.6100.069.1At3g15560--O.I.C.G.H.G.
219.0100.0112.0At3g49240824085emb1796 (embryo defective 1796)F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBAO.I.C.G.H.G.
209.8100.0450.5At5g61030836224GR-RBP3 (glycine-rich RNA-binding protein 3)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.O.I.C.G.H.G.
209.3100.0314.1At5g61310836252cytochrome c oxidase subunit Vc, putative / COX5C, putativeF:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;PO.I.C.G.H.G.
206.9100.0275.8At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPO.I.C.G.H.G.
203.6100.088.9At5g54910835582DEAD/DEAH box helicase, putativeF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAVO.I.C.G.H.G.
200.8100.0117.3At1g06420837153unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
195.4100.0125.1At1g05460837047SDE3 (SILENCING DEFECTIVE)Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.O.I.C.G.H.G.
191.3100.0153.4At5g44180834441homeobox transcription factor, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBFPVAO.I.C.G.H.G.
188.7100.0195.6At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVO.I.C.G.H.G.
188.5100.0134.4At3g19650821502cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
182.9100.086.0At5g16950831558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
178.0100.0126.7At2g21440816683RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAVO.I.C.G.H.G.
175.3100.0199.2At3g22660821837rRNA processing protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPO.I.C.G.H.G.
174.9100.095.6At2g06210815177ELF8 (EARLY FLOWERING 8)Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.O.I.C.G.H.G.
174.7100.0158.6At4g25730828678FtsJ-like methyltransferase family proteinF:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVAO.I.C.G.H.G.
171.2100.0196.8At3g24250822012glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
165.6100.095.4At4g00820828002iqd17 (IQ-domain 17)F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVBO.I.C.G.H.G.
164.8100.0250.0At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
164.7100.062.4At1g55040841947zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVAO.I.C.G.H.G.
163.999.9252.1At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.O.I.C.G.H.G.
162.799.999.5At1g44910841057protein bindingF:protein binding;P:biological_process unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
161.499.935.2At4g26660828773-F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAVO.I.C.G.H.G.
159.199.9100.1At5g06350830523bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
157.799.998.9At5g53800835461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
157.399.9284.9At1g15340838103MBD10Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.O.I.C.G.H.G.
153.499.978.1At3g29310822589calmodulin-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVO.I.C.G.H.G.
147.999.9148.1At1g68790843210LINC3 (LITTLE NUCLEI3)F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAVO.I.C.G.H.G.
143.899.9176.3At3g07050819890GTP-binding family proteinF:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAVO.I.C.G.H.G.
143.799.999.6At5g05210830403nucleolar matrix protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
143.299.9120.1At3g45450823685Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMVO.I.C.G.H.G.
143.099.9145.0At2g13690815853PRLI-interacting factor, putativeF:transcription regulator activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
142.399.9418.1At4g17520827467nuclear RNA-binding protein, putativeF:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVAO.I.C.G.H.G.
141.599.921.3At1g80100844350AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6)AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.C.G.H.G.
138.499.951.7At3g43210823396TES (TETRASPORE)Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis.O.I.C.G.H.G.
137.899.9200.9At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.C.G.H.G.
135.599.932.0At4g09940826584avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
135.099.946.3At1g03830839398guanylate-binding family proteinF:GTP binding, GTPase activity;P:immune response;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
132.599.929.1At1g53860841823remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBAO.I.C.G.H.G.
131.099.9321.3At2g077113768480-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
130.999.942.9At3g59420825111ACR4 (ARABIDOPSIS CRINKLY4)Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Flowers of mutants have disorganized ovule integument growth and abnormal sepal margins. In the roots, mutants initiate more lateral roots but fewer laterals actually emerge due to defects in lateral root formation. Mutants also display disorganized columella. The root phenotypes can be traced to abnormalities in asymmetric divisions in the pericycle and root apex. Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function. May be regulated by protein turnover which is mediated by endocytic processes.O.I.C.G.H.G.
129.599.9204.1At2g41650818763unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
127.199.9268.8At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
125.599.981.6At1g53720841810CYP59 (CYCLOPHILIN 59)Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis– trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.O.I.C.G.H.G.
125.299.9685.8At4g26840828791SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.O.I.C.G.H.G.
124.899.989.3At4g16240827318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
122.299.9117.1At2g34710818036PHB (PHABULOSA)Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.O.I.C.G.H.G.
121.499.9160.6At1g11240837665unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
118.899.998.0At4g01180828058XH/XS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAVO.I.C.G.H.G.
118.899.995.9At5g04290830308KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1)F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVAO.I.C.G.H.G.
118.499.933.9At4g24710828573ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAVO.I.C.G.H.G.
116.899.9336.4At2g22080816743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVAO.I.C.G.H.G.
116.899.989.1At4g37740829930AtGRF2 (GROWTHREGULATING FACTOR 2)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerO.I.C.G.H.G.
116.799.953.9At1g77050--O.I.C.G.H.G.
113.699.973.2At4g21140827862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
111.899.9126.7At5g55660835660-F:unknown;P:unknown;C:mitochondrion;MOFBPVAO.I.C.G.H.G.
110.799.9133.7At3g51720824335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
110.399.968.7At2g27170817259TTN7 (TITAN7)cohesinO.I.C.G.H.G.
109.899.9128.1At5g57120835816-F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOBFPVAO.I.C.G.H.G.
109.199.961.2At5g60930836214chromosome-associated kinesin, putativeF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAVO.I.C.G.H.G.
109.199.938.5At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
108.799.957.8At1g18950838476aminoacyl-tRNA synthetase familyF:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
107.699.942.5At5g55520835646-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
107.299.9442.0At4g28190828934ULT1 (ULTRAPETALA1)Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.O.I.C.G.H.G.
106.699.939.7At4g14150827054PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1)Microtubule motor kinesin PAKRP1/Kinesin-12A. Together with PAKRP1L/Kinesin-12B, serve as linkers of the plus ends of antiparallel microtubules in the phragmoplast.O.I.C.G.H.G.
106.399.9197.6At2g29210817470splicing factor PWI domain-containing proteinF:unknown;P:RNA splicing;C:unknown;MOFBPVAO.I.C.G.H.G.
105.999.948.3At2g46200819227unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAVO.I.C.G.H.G.
104.999.984.4At3g51280824291male sterility MS5, putativeF:binding;P:unknown;C:cellular_component unknown;OBPAFO.I.C.G.H.G.
104.399.946.3At4g28230828938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
103.799.968.3At5g26860832744LON1 (LON PROTEASE 1)Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790). Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells. Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.O.I.C.G.H.G.
101.999.956.3At5g13790831224AGL15 (AGAMOUS-LIKE 15)AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation.O.I.C.G.H.G.
100.899.976.3At5g23570832422SGS3 (SUPPRESSOR OF GENE SILENCING 3)Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.O.I.C.G.H.G.
100.799.923.4At5g52950835372unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMFO.I.C.G.H.G.
98.299.9160.8At5g45190834555cyclin family proteinEncodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).O.I.C.G.H.G.
97.099.965.5At4g12240826832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:mitochondrion;PFOO.I.C.G.H.G.
95.799.9233.1At4g23800828480high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.



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