Microarray experiments to specifically-expressed genes

GSM ID GSM284384
Assay name Arabidopsis GEP5
GSE experiment GSE11262: Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
669.6100.0374.3At3g57930824962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVO.I.C.G.H.G.
629.0100.0780.2At5g61030836224GR-RBP3 (glycine-rich RNA-binding protein 3)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.O.I.C.G.H.G.
608.6100.0593.0At1g72440843576EDA25 (embryo sac development arrest 25)F:unknown;P:polar nucleus fusion;C:endomembrane system;BOMFPVAO.I.C.G.H.G.
513.4100.0205.5At4g31360829263selenium bindingF:selenium binding;P:cell redox homeostasis;C:unknown;MOPFBO.I.C.G.H.G.
410.0100.0984.6At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
367.7100.0365.2At5g60030836125unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
344.6100.0210.7At2g27470817292NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVAO.I.C.G.H.G.
335.8100.0266.5At2g40650818660pre-mRNA splicing factor PRP38 family proteinF:binding;P:RNA processing;C:cellular_component unknown;MBOFPVAO.I.C.G.H.G.
308.9100.0283.2At1g15940838164bindingF:binding;P:biological_process unknown;C:unknown;MOBFPVAO.I.C.G.H.G.
308.6100.0109.8At3g44050823523kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAVO.I.C.G.H.G.
306.5100.0132.5At3g49240824085emb1796 (embryo defective 1796)F:ATP binding;P:embryonic development ending in seed dormancy;C:mitochondrion, chloroplast;POMFBAO.I.C.G.H.G.
292.8100.0422.7At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
292.8100.0152.6At5g61190836240zinc finger protein-relatedF:zinc ion binding, nucleic acid binding;P:unknown;C:chloroplast;MOPFBAVO.I.C.G.H.G.
255.9100.0192.0At4g25730828678FtsJ-like methyltransferase family proteinF:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVAO.I.C.G.H.G.
247.1100.0193.4At4g08460826405protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
229.1100.0318.0At3g5866082503560S ribosomal protein-relatedF:structural constituent of ribosome, RNA binding;P:translation, RNA processing;C:nucleolus, membrane;MOFPBAVO.I.C.G.H.G.
228.8100.0227.6At3g22660821837rRNA processing protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPO.I.C.G.H.G.
222.7100.0127.1At1g17140838284tropomyosin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
216.5100.0106.1At5g47690834820bindingF:binding;P:biological_process unknown;C:mitochondrion, nucleus, chloroplast;MOFPBVAO.I.C.G.H.G.
214.4100.0106.7At1g53720841810CYP59 (CYCLOPHILIN 59)Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis– trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.O.I.C.G.H.G.
211.3100.0286.2At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.O.I.C.G.H.G.
211.0100.0122.5At3g51270824290ATP binding / catalytic/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
209.8100.0176.4At1g68790843210LINC3 (LITTLE NUCLEI3)F:unknown;P:biological_process unknown;C:nucleolus;MOBFPAVO.I.C.G.H.G.
208.6100.0212.3At3g07050819890GTP-binding family proteinF:GTP binding;P:biological_process unknown;C:nucleolus;BMOFPAVO.I.C.G.H.G.
200.6100.0138.6At1g50300841452TAF15 (TBP-associated factor 15)F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MOPFBVAO.I.C.G.H.G.
192.7100.0208.8At3g24250822012glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAO.I.C.G.H.G.
181.7100.0148.2At1g15910838161XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
180.9100.0131.7At3g19650821502cyclin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
178.2100.0117.8At5g50740835146metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;POMBFVO.I.C.G.H.G.
175.4100.084.3At5g16950831558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
175.4100.031.6At4g00010--O.I.C.G.H.G.
174.6100.083.3At3g29310822589calmodulin-binding protein-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFPBVO.I.C.G.H.G.
173.2100.098.5At3g06010819772ATCHR12Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.O.I.C.G.H.G.
171.6100.0251.2At3g02760820930ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingF:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAPO.I.C.G.H.G.
170.6100.0252.2At2g25670817108unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
164.6100.044.4At4g29940829117PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A)Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.O.I.C.G.H.G.
157.599.986.4At1g71870843518MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
156.799.956.8At3g15560--O.I.C.G.H.G.
154.499.934.5At4g26660828773-F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAVO.I.C.G.H.G.
153.699.950.7At5g55520835646-F:unknown;P:biological_process unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
150.199.9123.0At3g45450823685Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:unknown;BOPFAMVO.I.C.G.H.G.
150.199.955.5At4g28230828938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
145.199.9215.8At5g09830830843BolA-like family proteinF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
138.899.9200.3At1g08580837380unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
138.099.9171.2At1g11240837665unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
137.999.999.2At1g19880838576regulator of chromosome condensation (RCC1) family proteinF:Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
137.299.987.3At3g52170824382DNA bindingF:DNA binding;P:biological_process unknown;C:unknown;BMPOAFO.I.C.G.H.G.
135.699.990.8At1g44910841057protein bindingF:protein binding;P:biological_process unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
131.399.9163.1At3g24490822039transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;MOPFBVO.I.C.G.H.G.
131.199.9108.8At2g21440816683RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAVO.I.C.G.H.G.
129.899.9221.8At2g25650817106DNA-binding storekeeper protein-relatedF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;OMFPBVAO.I.C.G.H.G.
126.799.9386.1At1g47970841215unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVAO.I.C.G.H.G.
124.499.993.6At3g15720820815glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAVO.I.C.G.H.G.
122.899.956.2At2g18520816367pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:membrane;POMFBAO.I.C.G.H.G.
122.299.953.8At1g55040841947zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVAO.I.C.G.H.G.
121.599.9386.4At4g17520827467nuclear RNA-binding protein, putativeF:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVAO.I.C.G.H.G.
120.399.990.8At1g06420837153unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBO.I.C.G.H.G.
116.799.9144.9At3g23890821972TOPII (TOPOISOMERASE II)Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.O.I.C.G.H.G.
116.399.9103.6At5g55670835661RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVAO.I.C.G.H.G.
116.399.962.6At5g19310832051homeotic gene regulator, putativeF:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
115.799.9128.9At5g55660835660-F:unknown;P:unknown;C:mitochondrion;MOFBPVAO.I.C.G.H.G.
114.299.9183.0At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.O.I.C.G.H.G.
113.899.9254.2At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
113.899.975.4At3g14900820719unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFBPVAO.I.C.G.H.G.
112.199.9240.5At1g15340838103MBD10Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.O.I.C.G.H.G.
111.999.990.1At3g60360825207EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)F:molecular_function unknown;P:megagametogenesis;C:small-subunit processome;MFOPABO.I.C.G.H.G.
111.899.9251.9At4g23800828480high mobility group (HMG1/2) family proteinF:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
111.299.9202.0At2g29210817470splicing factor PWI domain-containing proteinF:unknown;P:RNA splicing;C:unknown;MOFBPVAO.I.C.G.H.G.
110.599.9228.3At5g61310836252cytochrome c oxidase subunit Vc, putative / COX5C, putativeF:cytochrome-c oxidase activity;P:unknown;C:mitochondrial respiratory chain, endomembrane system;PO.I.C.G.H.G.
109.599.9103.9At5g40490834047RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.C.G.H.G.
108.099.977.0At4g00820828002iqd17 (IQ-domain 17)F:calmodulin binding;P:biological_process unknown;C:unknown;POMFVBO.I.C.G.H.G.
107.799.9225.5At5g60960836217pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.C.G.H.G.
107.799.9104.4At3g48670824027XH/XS domain-containing protein / XS zinc finger domain-containing proteinF:molecular_function unknown;P:response to cadmium ion;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
107.599.9190.8At1g28420839740HB-1 (homeobox-1)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVAO.I.C.G.H.G.
107.199.9185.6At2g41650818763unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
106.999.978.5At5g23570832422SGS3 (SUPPRESSOR OF GENE SILENCING 3)Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.O.I.C.G.H.G.
106.799.9297.1At3g28730822505ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP)encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1O.I.C.G.H.G.
105.599.982.1At4g16240827318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
104.399.940.7At1g03830839398guanylate-binding family proteinF:GTP binding, GTPase activity;P:immune response;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
104.099.913.5At1g14687838033AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO.I.C.G.H.G.
103.599.939.7At5g46640834707DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBMOFO.I.C.G.H.G.
101.099.9282.1At2g077113768480-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
100.899.937.0At3g20150821558kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAVO.I.C.G.H.G.
99.499.9126.7At3g51720824335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFAVO.I.C.G.H.G.
97.899.944.3At4g25835828689AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
96.699.981.7At5g05210830403nucleolar matrix protein-relatedF:unknown;P:unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
96.599.988.3At4g01180828058XH/XS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAVO.I.C.G.H.G.
94.599.947.9At1g71850843515ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;POFMVBO.I.C.G.H.G.
94.399.956.9At5g60930836214chromosome-associated kinesin, putativeF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPAVO.I.C.G.H.G.
93.999.976.9At5g06350830523bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
93.799.9128.0At2g47990819411SWA1 (SLOW WALKER1)Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.O.I.C.G.H.G.
93.499.9107.9At5g25060832577RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVAO.I.C.G.H.G.
91.199.9162.7At3g63500825525unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OMPFBAO.I.C.G.H.G.
91.099.951.9At2g47500819363ATP binding / microtubule motorF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPO.I.C.G.H.G.
90.999.9214.9At1g09770837506ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1.O.I.C.G.H.G.
90.699.9140.7At3g59820825151calcium-binding mitochondrial protein-relatedF:calcium ion binding;P:unknown;C:mitochondrion;MOFBPAVO.I.C.G.H.G.
90.199.9211.1At3g070303768790nucleic acid bindingF:nucleic acid binding;P:unknown;C:unknownO.I.C.G.H.G.
88.299.925.8At4g09940826584avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
86.899.969.6At1g64600842768copper ion binding / methyltransferaseF:methyltransferase activity, copper ion binding;P:translation;C:cellular_component unknown;MFOBPO.I.C.G.H.G.
85.799.951.3At1g18950838476aminoacyl-tRNA synthetase familyF:aminoacyl-tRNA ligase activity;P:biological_process unknown;C:unknown;MOFBPVAO.I.C.G.H.G.



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