CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM282696

Assay name arf2_mock_rep3

GSE experiment GSE11216: Brassinazole treatment of arf2 and wild-type dark-grown seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
100.2 99.9 250.2 At5g02020 831782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
82.0 99.9 70.9 At4g25580 828663 stress-responsive protein-related F:unknown;P:unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
72.6 99.9 251.2 At4g37220 829876 stress-responsive protein, putative F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P O.I. C.G. H.G.
58.6 99.8 31.1 At1g20390 3766766 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
54.4 99.8 43.8 At1g72070 843538 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV O.I. C.G. H.G.
51.8 99.8 48.2 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB O.I. C.G. H.G.
51.5 99.8 344.0 At1g19530 838540 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
50.5 99.8 233.6 At1g03090 838362 MCCA MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. O.I. C.G. H.G.
46.7 99.8 242.5 At5g54080 835494 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) homogentisate 1,2-dioxygenase O.I. C.G. H.G.
45.4 99.8 170.3 At3g45300 823668 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. O.I. C.G. H.G.
44.8 99.8 53.6 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
44.3 99.8 52.9 At2g41850 818785 PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA) ADPG2. O.I. C.G. H.G.
43.7 99.8 142.4 At5g54190 835507 PORA light-dependent NADPH:protochlorophyllide oxidoreductase A O.I. C.G. H.G.
41.0 99.8 224.9 At1g06570 837168 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. O.I. C.G. H.G.
39.6 99.8 205.9 At1g10070 837543 ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. O.I. C.G. H.G.
39.5 99.8 231.2 At1g73120 843643 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:unknown;P O.I. C.G. H.G.
39.4 99.8 140.1 At1g15040 838069 glutamine amidotransferase-related F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
38.9 99.8 217.9 At1g09570 837483 PHYA (PHYTOCHROME A) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. O.I. C.G. H.G.
37.1 99.7 215.3 At2g38400 818421 AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3) alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA, O.I. C.G. H.G.
35.4 99.7 217.0 At3g60140 825184 DIN2 (DARK INDUCIBLE 2) Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
35.3 99.7 192.1 At1g12080 837760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
35.2 99.7 62.7 At3g20340 821578 - Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. O.I. C.G. H.G.
34.2 99.7 166.8 At5g06370 830525 NC domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO O.I. C.G. H.G.
34.1 99.7 15.6 At2g46990 819313 IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development. O.I. C.G. H.G.
33.1 99.7 44.9 At5g57240 835830 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP O.I. C.G. H.G.
32.6 99.7 35.5 At5g67060 836841 HEC1 (HECATE 1) F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA O.I. C.G. H.G.
31.1 99.7 143.2 At1g64660 842774 ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE) Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis. O.I. C.G. H.G.
30.2 99.7 116.6 At1g26665 839207 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
29.0 99.7 334.0 At4g14130 827051 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) xyloglucan endotransglycosylase-related protein (XTR7) O.I. C.G. H.G.
28.8 99.7 457.4 At2g05540 815103 glycine-rich protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
28.6 99.7 33.4 At4g16670 827369 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO O.I. C.G. H.G.
27.9 99.7 275.1 At1g28330 839729 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) dormancy-associated protein (DRM1) O.I. C.G. H.G.
26.0 99.7 72.0 At1g23870 838998 ATTPS9 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
25.8 99.7 204.9 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
25.8 99.7 36.9 At1g34760 840380 GRF11 (GENERAL REGULATORY FACTOR 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. O.I. C.G. H.G.
25.4 99.6 153.2 At3g06850 819869 BCE2 dihydrolipoamide branched chain acyltransferase O.I. C.G. H.G.
25.3 99.6 450.9 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
25.3 99.6 82.4 At1g08630 837385 THA1 (Threonine Aldolase 1) Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. O.I. C.G. H.G.
24.4 99.6 88.7 At4g25260 828629 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P O.I. C.G. H.G.
24.3 99.6 55.4 At3g05920 819761 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA O.I. C.G. H.G.
24.1 99.6 77.0 At3g05900 819759 neurofilament protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
22.5 99.6 194.5 At1g32170 840109 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) xyloglucan endotransglycosylase-related protein (XTR4) O.I. C.G. H.G.
22.4 99.6 105.6 At5g56100 835709 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB O.I. C.G. H.G.
22.4 99.6 75.6 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO O.I. C.G. H.G.
22.1 99.6 325.7 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity O.I. C.G. H.G.
21.8 99.6 249.2 At1g80440 844383 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFA O.I. C.G. H.G.
21.8 99.6 61.9 At5g53980 835481 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. O.I. C.G. H.G.
21.7 99.6 236.0 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
21.2 99.6 118.6 At4g17730 827494 SYP23 (SYNTAXIN OF PLANTS 23) member of SYP2 Gene Family O.I. C.G. H.G.
20.9 99.6 122.5 At4g38470 830003 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation, metabolic process;C:cytosol;MPOBFVA O.I. C.G. H.G.
20.8 99.6 325.3 At3g47340 823888 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. O.I. C.G. H.G.
20.8 99.6 14.9 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
20.5 99.6 256.3 At2g32150 817774 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAM O.I. C.G. H.G.
20.5 99.6 17.8 At4g29140 829035 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
20.5 99.6 13.5 At5g49690 835032 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOVF O.I. C.G. H.G.
19.9 99.6 409.6 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). O.I. C.G. H.G.
19.9 99.6 34.2 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV O.I. C.G. H.G.
19.7 99.6 355.2 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO O.I. C.G. H.G.
19.7 99.6 143.9 At4g33150 829452 lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme F:unknown;P:unknown;C:unknown;OBFMPA O.I. C.G. H.G.
19.7 99.6 56.1 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
19.6 99.6 148.2 At2g14900 815979 gibberellin-regulated family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
19.1 99.6 16.6 At4g36900 829843 RAP2.10 (related to AP2 10) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1. O.I. C.G. H.G.
19.0 99.5 176.0 At3g61060 825278 AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13) F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;P O.I. C.G. H.G.
18.9 99.5 39.8 At1g27520 839643 glycoside hydrolase family 47 protein F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:endomembrane system, membrane;MFOPB O.I. C.G. H.G.
18.5 99.5 519.9 At4g35770 829730 SEN1 (SENESCENCE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. O.I. C.G. H.G.
18.5 99.5 139.1 At4g38580 830015 ATFP6 (FARNESYLATED PROTEIN 6) putative farnesylated protein (At4g38580) mRNA, complete O.I. C.G. H.G.
18.4 99.5 240.2 At1g12780 837834 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1) Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress. O.I. C.G. H.G.
18.4 99.5 70.5 At1g55810 842031 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
18.0 99.5 297.0 At5g56870 835789 BGAL4 (beta-galactosidase 4) F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA O.I. C.G. H.G.
18.0 99.5 117.6 At1g58180 842185 carbonic anhydrase family protein / carbonate dehydratase family protein F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA O.I. C.G. H.G.
17.8 99.5 835.8 At2g38530 818435 LTP2 (LIPID TRANSFER PROTEIN 2) Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
17.8 99.5 43.7 At2g46740 819287 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA O.I. C.G. H.G.
17.6 99.5 155.3 At5g66170 836749 - F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA O.I. C.G. H.G.
17.5 99.5 71.9 At2g42890 818890 AML2 (ARABIDOPSIS-MEI2-LIKE 2) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices. O.I. C.G. H.G.
17.4 99.5 14.7 At2g19660 816485 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
17.0 99.5 33.8 At3g59690 825138 IQD13 (IQ-domain 13) F:calmodulin binding;P:unknown;C:plasma membrane;POMVFB O.I. C.G. H.G.
16.9 99.5 58.3 At1g76460 843979 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA O.I. C.G. H.G.
16.9 99.5 51.0 At3g19860 821523 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV O.I. C.G. H.G.
16.7 99.5 294.9 At4g35750 829728 Rho-GTPase-activating protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
16.5 99.5 53.6 At1g02340 839300 HFR1 (LONG HYPOCOTYL IN FAR-RED) Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. O.I. C.G. H.G.
16.3 99.5 131.6 At2g18280 816344 AtTLP2 (TUBBY LIKE PROTEIN 2) Member of TLP family O.I. C.G. H.G.
16.2 99.5 210.3 At3g10985 2745879 SAG20 (SENESCENCE ASSOCIATED GENE 20) A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis. O.I. C.G. H.G.
16.2 99.5 80.0 At4g28040 828919 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM O.I. C.G. H.G.
16.1 99.5 170.1 At2g37750 818352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.0 99.5 77.0 At2g01100 814639 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
15.8 99.5 119.8 At3g01690 821094 - F:unknown;P:unknown;C:unknown;OBMPFVA O.I. C.G. H.G.
15.5 99.5 58.6 At1g64640 842772 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
15.1 99.4 207.0 At2g01450 814673 ATMPK17 member of MAP Kinase O.I. C.G. H.G.
15.1 99.4 50.6 At2g25930 817134 ELF3 (EARLY FLOWERING 3) Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway Elf3 controls rhythmic circadian outputs under constant light conditions. O.I. C.G. H.G.
15.0 99.4 129.0 At5g57655 835871 xylose isomerase family protein F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF O.I. C.G. H.G.
14.8 99.4 404.0 At1g73260 843660 trypsin and protease inhibitor family protein / Kunitz family protein F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO O.I. C.G. H.G.
14.8 99.4 12.7 At1g21360 838735 GLTP2 (glycolipid transfer protein 2) F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;P O.I. C.G. H.G.
14.5 99.4 84.0 At1g10140 837551 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO O.I. C.G. H.G.
14.5 99.4 22.4 At2g36080 818181 DNA-binding protein, putative Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity. O.I. C.G. H.G.
14.3 99.4 39.8 At2g43060 818908 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
14.3 99.4 22.1 At4g30410 829164 transcription factor F:transcription factor activity;P:unknown;C:unknown;PO O.I. C.G. H.G.
14.2 99.4 40.5 At1g79700 844309 ovule development protein, putative F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
14.1 99.4 187.3 At1g21680 838770 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole, plant-type cell wall;BOPAMF O.I. C.G. H.G.
14.1 99.4 174.4 At4g19860 827730 lecithin:cholesterol acyltransferase family protein / LACT family protein F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:cellular_component unknown;MOPBFA O.I. C.G. H.G.
14.1 99.4 43.2 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
100.2	99.9	250.2	At5g02020	831782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
82.0	99.9	70.9	At4g25580	828663	stress-responsive protein-related	F:unknown;P:unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
72.6	99.9	251.2	At4g37220	829876	stress-responsive protein, putative	F:molecular_function unknown;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus, response to stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.6	99.8	31.1	At1g20390	3766766	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
54.4	99.8	43.8	At1g72070	843538	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAV	O.I.	C.G.	H.G.
51.8	99.8	48.2	At5g64110	836532	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB	O.I.	C.G.	H.G.
51.5	99.8	344.0	At1g19530	838540	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.5	99.8	233.6	At1g03090	838362	MCCA	MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion.	O.I.	C.G.	H.G.
46.7	99.8	242.5	At5g54080	835494	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	homogentisate 1,2-dioxygenase	O.I.	C.G.	H.G.
45.4	99.8	170.3	At3g45300	823668	IVD (ISOVALERYL-COA-DEHYDROGENASE)	Encodes isovaleryl-coenzyme a dehydrogenase.	O.I.	C.G.	H.G.
44.8	99.8	53.6	At5g53660	835447	AtGRF7 (GROWTH-REGULATING FACTOR 7)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
44.3	99.8	52.9	At2g41850	818785	PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA)	ADPG2.	O.I.	C.G.	H.G.
43.7	99.8	142.4	At5g54190	835507	PORA	light-dependent NADPH:protochlorophyllide oxidoreductase A	O.I.	C.G.	H.G.
41.0	99.8	224.9	At1g06570	837168	PDS1 (PHYTOENE DESATURATION 1)	Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.	O.I.	C.G.	H.G.
39.6	99.8	205.9	At1g10070	837543	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2)	Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant.	O.I.	C.G.	H.G.
39.5	99.8	231.2	At1g73120	843643	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:unknown;P	O.I.	C.G.	H.G.
39.4	99.8	140.1	At1g15040	838069	glutamine amidotransferase-related	F:hydrolase activity;P:glutamine metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
38.9	99.8	217.9	At1g09570	837483	PHYA (PHYTOCHROME A)	Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.	O.I.	C.G.	H.G.
37.1	99.7	215.3	At2g38400	818421	AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3)	alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,	O.I.	C.G.	H.G.
35.4	99.7	217.0	At3g60140	825184	DIN2 (DARK INDUCIBLE 2)	Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
35.3	99.7	192.1	At1g12080	837760	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
35.2	99.7	62.7	At3g20340	821578	-	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	O.I.	C.G.	H.G.
34.2	99.7	166.8	At5g06370	830525	NC domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO	O.I.	C.G.	H.G.
34.1	99.7	15.6	At2g46990	819313	IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.	O.I.	C.G.	H.G.
33.1	99.7	44.9	At5g57240	835830	ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)	F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
32.6	99.7	35.5	At5g67060	836841	HEC1 (HECATE 1)	F:transcription factor activity;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;PMBOFA	O.I.	C.G.	H.G.
31.1	99.7	143.2	At1g64660	842774	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methionine homeostasis.	O.I.	C.G.	H.G.
30.2	99.7	116.6	At1g26665	839207	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
29.0	99.7	334.0	At4g14130	827051	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	xyloglucan endotransglycosylase-related protein (XTR7)	O.I.	C.G.	H.G.
28.8	99.7	457.4	At2g05540	815103	glycine-rich protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
28.6	99.7	33.4	At4g16670	827369	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
27.9	99.7	275.1	At1g28330	839729	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	dormancy-associated protein (DRM1)	O.I.	C.G.	H.G.
26.0	99.7	72.0	At1g23870	838998	ATTPS9	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
25.8	99.7	204.9	At2g43050	818907	ATPMEPCRD	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
25.8	99.7	36.9	At1g34760	840380	GRF11 (GENERAL REGULATORY FACTOR 11)	Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.	O.I.	C.G.	H.G.
25.4	99.6	153.2	At3g06850	819869	BCE2	dihydrolipoamide branched chain acyltransferase	O.I.	C.G.	H.G.
25.3	99.6	450.9	At5g49360	834996	BXL1 (BETA-XYLOSIDASE 1)	Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
25.3	99.6	82.4	At1g08630	837385	THA1 (Threonine Aldolase 1)	Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.	O.I.	C.G.	H.G.
24.4	99.6	88.7	At4g25260	828629	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:shade avoidance;C:endomembrane system;P	O.I.	C.G.	H.G.
24.3	99.6	55.4	At3g05920	819761	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFA	O.I.	C.G.	H.G.
24.1	99.6	77.0	At3g05900	819759	neurofilament protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
22.5	99.6	194.5	At1g32170	840109	XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4)	xyloglucan endotransglycosylase-related protein (XTR4)	O.I.	C.G.	H.G.
22.4	99.6	105.6	At5g56100	835709	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	O.I.	C.G.	H.G.
22.4	99.6	75.6	At5g44920	834522	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO	O.I.	C.G.	H.G.
22.1	99.6	325.7	At5g64120	836533	peroxidase, putative	encodes a cell wall bound peroxidase that is induced by hypo-osmolarity	O.I.	C.G.	H.G.
21.8	99.6	249.2	At1g80440	844383	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFA	O.I.	C.G.	H.G.
21.8	99.6	61.9	At5g53980	835481	ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.	O.I.	C.G.	H.G.
21.7	99.6	236.0	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
21.2	99.6	118.6	At4g17730	827494	SYP23 (SYNTAXIN OF PLANTS 23)	member of SYP2 Gene Family	O.I.	C.G.	H.G.
20.9	99.6	122.5	At4g38470	830003	protein kinase family protein	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation, metabolic process;C:cytosol;MPOBFVA	O.I.	C.G.	H.G.
20.8	99.6	325.3	At3g47340	823888	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.	O.I.	C.G.	H.G.
20.8	99.6	14.9	At1g27670	839659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
20.5	99.6	256.3	At2g32150	817774	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAM	O.I.	C.G.	H.G.
20.5	99.6	17.8	At4g29140	829035	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
20.5	99.6	13.5	At5g49690	835032	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOVF	O.I.	C.G.	H.G.
19.9	99.6	409.6	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	O.I.	C.G.	H.G.
19.9	99.6	34.2	At5g44260	834449	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV	O.I.	C.G.	H.G.
19.7	99.6	355.2	At2g37130	818289	peroxidase 21 (PER21) (P21) (PRXR5)	F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO	O.I.	C.G.	H.G.
19.7	99.6	143.9	At4g33150	829452	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	F:unknown;P:unknown;C:unknown;OBFMPA	O.I.	C.G.	H.G.
19.7	99.6	56.1	At5g62280	836349	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
19.6	99.6	148.2	At2g14900	815979	gibberellin-regulated family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
19.1	99.6	16.6	At4g36900	829843	RAP2.10 (related to AP2 10)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1.	O.I.	C.G.	H.G.
19.0	99.5	176.0	At3g61060	825278	AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)	F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;P	O.I.	C.G.	H.G.
18.9	99.5	39.8	At1g27520	839643	glycoside hydrolase family 47 protein	F:mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, alpha-mannosidase activity, calcium ion binding;P:protein amino acid N-linked glycosylation;C:endomembrane system, membrane;MFOPB	O.I.	C.G.	H.G.
18.5	99.5	519.9	At4g35770	829730	SEN1 (SENESCENCE 1)	Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.	O.I.	C.G.	H.G.
18.5	99.5	139.1	At4g38580	830015	ATFP6 (FARNESYLATED PROTEIN 6)	putative farnesylated protein (At4g38580) mRNA, complete	O.I.	C.G.	H.G.
18.4	99.5	240.2	At1g12780	837834	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Responsive to stress.	O.I.	C.G.	H.G.
18.4	99.5	70.5	At1g55810	842031	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative	F:uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, metabolic process;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
18.0	99.5	297.0	At5g56870	835789	BGAL4 (beta-galactosidase 4)	F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOA	O.I.	C.G.	H.G.
18.0	99.5	117.6	At1g58180	842185	carbonic anhydrase family protein / carbonate dehydratase family protein	F:carbonate dehydratase activity, zinc ion binding;P:carbon utilization;C:mitochondrion;BOPFMA	O.I.	C.G.	H.G.
17.8	99.5	835.8	At2g38530	818435	LTP2 (LIPID TRANSFER PROTEIN 2)	Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
17.8	99.5	43.7	At2g46740	819287	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BOFPMA	O.I.	C.G.	H.G.
17.6	99.5	155.3	At5g66170	836749	-	F:molecular_function unknown;P:aging;C:cellular_component unknown;PBOA	O.I.	C.G.	H.G.
17.5	99.5	71.9	At2g42890	818890	AML2 (ARABIDOPSIS-MEI2-LIKE 2)	A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.	O.I.	C.G.	H.G.
17.4	99.5	14.7	At2g19660	816485	DC1 domain-containing protein	F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
17.0	99.5	33.8	At3g59690	825138	IQD13 (IQ-domain 13)	F:calmodulin binding;P:unknown;C:plasma membrane;POMVFB	O.I.	C.G.	H.G.
16.9	99.5	58.3	At1g76460	843979	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA	O.I.	C.G.	H.G.
16.9	99.5	51.0	At3g19860	821523	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBV	O.I.	C.G.	H.G.
16.7	99.5	294.9	At4g35750	829728	Rho-GTPase-activating protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
16.5	99.5	53.6	At1g02340	839300	HFR1 (LONG HYPOCOTYL IN FAR-RED)	Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.	O.I.	C.G.	H.G.
16.3	99.5	131.6	At2g18280	816344	AtTLP2 (TUBBY LIKE PROTEIN 2)	Member of TLP family	O.I.	C.G.	H.G.
16.2	99.5	210.3	At3g10985	2745879	SAG20 (SENESCENCE ASSOCIATED GENE 20)	A senescence-associated gene whose expression is induced in response to treatment with Nep1, a fungal protein that causes necrosis.	O.I.	C.G.	H.G.
16.2	99.5	80.0	At4g28040	828919	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAM	O.I.	C.G.	H.G.
16.1	99.5	170.1	At2g37750	818352	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.0	99.5	77.0	At2g01100	814639	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
15.8	99.5	119.8	At3g01690	821094	-	F:unknown;P:unknown;C:unknown;OBMPFVA	O.I.	C.G.	H.G.
15.5	99.5	58.6	At1g64640	842772	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
15.1	99.4	207.0	At2g01450	814673	ATMPK17	member of MAP Kinase	O.I.	C.G.	H.G.
15.1	99.4	50.6	At2g25930	817134	ELF3 (EARLY FLOWERING 3)	Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway Elf3 controls rhythmic circadian outputs under constant light conditions.	O.I.	C.G.	H.G.
15.0	99.4	129.0	At5g57655	835871	xylose isomerase family protein	F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF	O.I.	C.G.	H.G.
14.8	99.4	404.0	At1g73260	843660	trypsin and protease inhibitor family protein / Kunitz family protein	F:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;PO	O.I.	C.G.	H.G.
14.8	99.4	12.7	At1g21360	838735	GLTP2 (glycolipid transfer protein 2)	F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;P	O.I.	C.G.	H.G.
14.5	99.4	84.0	At1g10140	837551	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO	O.I.	C.G.	H.G.
14.5	99.4	22.4	At2g36080	818181	DNA-binding protein, putative	Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.	O.I.	C.G.	H.G.
14.3	99.4	39.8	At2g43060	818908	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
14.3	99.4	22.1	At4g30410	829164	transcription factor	F:transcription factor activity;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
14.2	99.4	40.5	At1g79700	844309	ovule development protein, putative	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
14.1	99.4	187.3	At1g21680	838770	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole, plant-type cell wall;BOPAMF	O.I.	C.G.	H.G.
14.1	99.4	174.4	At4g19860	827730	lecithin:cholesterol acyltransferase family protein / LACT family protein	F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:cellular_component unknown;MOPBFA	O.I.	C.G.	H.G.
14.1	99.4	43.2	At5g63650	836485	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.	O.I.	C.G.	H.G.

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GSM ID	GSM282696
Assay name	arf2_mock_rep3
GSE experiment	GSE11216: Brassinazole treatment of arf2 and wild-type dark-grown seedlings

Microarray experiments to specifically-expressed genes

GSM ID GSM282696 Assay name arf2_mock_rep3 GSE experiment GSE11216: Brassinazole treatment of arf2 and wild-type dark-grown seedlings

GSM ID GSM282696

Assay name arf2_mock_rep3

GSE experiment GSE11216: Brassinazole treatment of arf2 and wild-type dark-grown seedlings