CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM275643

Assay name flu_2h

GSE experiment GSE10876: Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
121.4 99.9 22.3 At3g53790 824546 TRFL4 (TRF-LIKE 4) Arabidopsis thaliana telomere-binding protein, putative (At3g53790) O.I. C.G. H.G.
52.5 99.8 17.3 At1g61610 842457 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
48.7 99.8 199.3 At3g09350 820091 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
48.0 99.8 86.5 At1g61120 842405 TPS04 (TERPENE SYNTHASE 04) Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum. O.I. C.G. H.G.
47.4 99.8 100.4 At2g20340 816553 tyrosine decarboxylase, putative F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
46.0 99.8 59.3 At1g32870 840181 ANAC13 (Arabidopsis thaliana NAC domain protein 13) F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMF O.I. C.G. H.G.
38.5 99.8 168.3 At4g03050 828104 AOP3 Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis. O.I. C.G. H.G.
38.3 99.8 47.8 At1g05100 839324 MAPKKK18 member of MEKK subfamily O.I. C.G. H.G.
38.0 99.8 18.3 At3g28600 822490 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
37.4 99.7 155.8 At1g44350 841026 ILL6 encodes a protein similar to IAA amino acid conjugate hydrolase. O.I. C.G. H.G.
35.4 99.7 153.6 At1g51760 841602 IAR3 (IAA-ALANINE RESISTANT 3) encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers. O.I. C.G. H.G.
34.1 99.7 163.2 At3g51860 824349 CAX3 (CATION EXCHANGER 3) F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM O.I. C.G. H.G.
33.9 99.7 154.4 At4g05020 825844 NDB2 (NAD(P)H dehydrogenase B2) F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAM O.I. C.G. H.G.
33.9 99.7 52.4 At1g74430 843784 MYB95 (myb domain protein 95) Encodes a putative transcription factor (MYB95). O.I. C.G. H.G.
32.7 99.7 160.3 At3g06500 819828 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB O.I. C.G. H.G.
32.1 99.7 33.6 At1g66080 842922 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
31.4 99.7 139.2 At3g25780 822169 AOC3 (ALLENE OXIDE CYCLASE 3) Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. O.I. C.G. H.G.
31.4 99.7 57.3 At5g55120 835603 VTC5 (VITAMIN C DEFECTIVE 5) Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2. O.I. C.G. H.G.
29.1 99.7 74.5 At1g01560 839523 ATMPK11 member of MAP Kinase O.I. C.G. H.G.
29.0 99.7 118.3 At1g17380 838310 JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5) F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
28.7 99.7 88.3 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
28.7 99.7 50.4 At2g46510 819262 ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR) Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive. O.I. C.G. H.G.
28.4 99.7 122.1 At5g12010 831074 unknown protein F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO O.I. C.G. H.G.
28.1 99.7 50.7 At4g27940 828907 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
28.0 99.7 94.6 At2g16900 816192 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA O.I. C.G. H.G.
27.8 99.7 69.9 At2g36630 818235 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA O.I. C.G. H.G.
27.4 99.7 32.6 At3g14440 820667 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane. O.I. C.G. H.G.
26.7 99.7 147.0 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF O.I. C.G. H.G.
25.8 99.7 90.1 At3g53780 824545 rhomboid family protein F:unknown;P:unknown;C:plasma membrane;BOMPAF O.I. C.G. H.G.
25.6 99.7 106.6 At5g51440 835218 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM O.I. C.G. H.G.
25.6 99.7 33.8 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
25.2 99.6 37.4 At2g25140 817052 CLPB4 (CASEIN LYTIC PROTEINASE B4) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress. O.I. C.G. H.G.
24.7 99.6 206.2 At2g29450 817494 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002) O.I. C.G. H.G.
24.6 99.6 148.2 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
23.7 99.6 31.5 At2g43320 818933 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFB O.I. C.G. H.G.
23.3 99.6 142.7 At1g20510 838639 OPCL1 (OPC-8:0 COA LIGASE1) F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV O.I. C.G. H.G.
23.3 99.6 27.7 At5g53750 835456 - F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;P O.I. C.G. H.G.
22.9 99.6 50.9 At1g19300 838512 PARVUS (PARVUS) The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls. O.I. C.G. H.G.
22.8 99.6 11.6 At3g44560 823581 FAR8 (FATTY ACID REDUCTASE 8) F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFP O.I. C.G. H.G.
22.4 99.6 52.1 At3g14200 820637 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
22.3 99.6 47.9 At2g32140 817773 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO O.I. C.G. H.G.
21.7 99.6 68.8 At3g55130 824679 ATWBC19 (White-Brown Complex homolog 19) Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. O.I. C.G. H.G.
21.5 99.6 29.7 At4g15660 827243 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
21.4 99.6 160.8 At5g13200 831159 GRAM domain-containing protein / ABA-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
20.7 99.6 195.4 At5g12030 831076 AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A) Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development. O.I. C.G. H.G.
20.5 99.6 55.3 At5g47730 834824 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative F:transporter activity, binding;P:transport;C:cellular_component unknown;MPFO O.I. C.G. H.G.
20.1 99.6 65.3 At5g27520 832812 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. O.I. C.G. H.G.
19.9 99.6 123.5 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
19.4 99.6 39.2 At3g53810 824548 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
19.1 99.6 200.4 At4g27410 828849 RD26 (RESPONSIVE TO DESICCATION 26) Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response. O.I. C.G. H.G.
19.1 99.6 145.1 At1g52890 841722 ANAC019 (Arabidopsis NAC domain containing protein 19) encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. O.I. C.G. H.G.
18.9 99.5 52.8 At5g57150 835821 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVO O.I. C.G. H.G.
18.6 99.5 13.7 At2g44580 819066 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
18.4 99.5 96.0 At5g13220 831162 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa. O.I. C.G. H.G.
17.7 99.5 89.5 At1g18590 838440 SOT17 (SULFOTRANSFERASE 17) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. O.I. C.G. H.G.
17.6 99.5 33.5 At3g08970 820049 ATERDJ3A J domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth. O.I. C.G. H.G.
17.5 99.5 145.4 At1g74310 843771 ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature. O.I. C.G. H.G.
17.4 99.5 22.8 At1g18710 838453 AtMYB47 (myb domain protein 47) Member of the R2R3 factor gene family. O.I. C.G. H.G.
16.8 99.5 112.6 At5g12020 831075 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM O.I. C.G. H.G.
16.8 99.5 85.1 At1g10170 837555 ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. O.I. C.G. H.G.
16.6 99.5 273.6 At4g01870 828228 tolB protein-related F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;OBPFAM O.I. C.G. H.G.
16.5 99.5 54.3 At3g25610 822148 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAV O.I. C.G. H.G.
16.2 99.5 27.7 At2g30540 817603 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO O.I. C.G. H.G.
16.1 99.5 221.3 At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. O.I. C.G. H.G.
16.1 99.5 158.1 At1g72450 843577 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. O.I. C.G. H.G.
16.1 99.5 45.2 At4g08170 826367 inositol 1,3,4-trisphosphate 5/6-kinase family protein F:magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity;P:response to wounding;C:nucleus, cytoplasm;PMOB O.I. C.G. H.G.
15.8 99.5 214.8 At2g24850 817022 TAT3 (TYROSINE AMINOTRANSFERASE 3) Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid. O.I. C.G. H.G.
15.8 99.5 58.0 At5g62570 836377 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.7 99.5 132.8 At1g70700 843407 TIFY7 JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
15.3 99.4 215.8 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA O.I. C.G. H.G.
15.3 99.4 161.6 At4g24380 828540 unknown protein F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB O.I. C.G. H.G.
15.3 99.4 153.5 At2g29420 817491 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. O.I. C.G. H.G.
15.3 99.4 94.5 At2g46400 819248 WRKY46 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
15.2 99.4 79.9 At3g21230 821677 4CL5 (4-coumarate:CoA ligase 5) The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. O.I. C.G. H.G.
15.0 99.4 58.6 At4g17615 827481 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation. O.I. C.G. H.G.
15.0 99.4 44.1 At3g22740 821845 HMT3 homocysteine S-methyltransferase (HMT3) O.I. C.G. H.G.
14.9 99.4 236.2 At1g19180 838501 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2. O.I. C.G. H.G.
14.9 99.4 44.6 At4g35600 829712 CONNEXIN 32 plant-type connexin (gap junction-type protein), a component of plasmodesmata O.I. C.G. H.G.
14.8 99.4 153.5 At1g61890 842485 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
14.8 99.4 117.4 At4g37370 829891 CYP81D8 member of CYP81D O.I. C.G. H.G.
14.8 99.4 34.6 At5g57050 835809 ABI2 (ABA INSENSITIVE 2) Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo. O.I. C.G. H.G.
14.6 99.4 146.6 At1g74950 843834 TIFY10B F:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;P O.I. C.G. H.G.
14.6 99.4 73.8 At5g48150 834867 PAT1 (phytochrome a signal transduction 1) Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway. O.I. C.G. H.G.
14.6 99.4 60.8 At5g58770 835991 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP O.I. C.G. H.G.
14.6 99.4 56.4 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
14.5 99.4 25.9 At3g50760 824240 GATL2 (Galacturonosyltransferase-like 2) Encodes a protein with putative galacturonosyltransferase activity. O.I. C.G. H.G.
14.3 99.4 70.3 At5g42380 834244 CML37 (CALMODULIN LIKE 37) F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV O.I. C.G. H.G.
14.2 99.4 163.5 At2g41730 818772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.2 99.4 70.2 At3g28210 822447 PMZ Encodes a putative zinc finger protein (PMZ). O.I. C.G. H.G.
14.1 99.4 156.8 At5g26030 832672 FC1 (ferrochelatase 1) encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins O.I. C.G. H.G.
14.1 99.4 126.7 At2g46650 819277 CB5-C (CYTOCHROME B5 ISOFORM C) member of Cytochromes b5 O.I. C.G. H.G.
13.9 99.4 104.9 At1g27770 839670 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. O.I. C.G. H.G.
13.9 99.4 76.9 At2g42760 818876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
13.8 99.4 90.0 At2g46240 819232 BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. O.I. C.G. H.G.
13.7 99.4 158.0 At1g07400 837252 17.8 kDa class I heat shock protein (HSP17.8-CI) F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
13.7 99.4 98.0 At3g51660 824329 macrophage migration inhibitory factor family protein / MIF family protein F:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOB O.I. C.G. H.G.
13.6 99.4 83.7 At1g17420 838314 LOX3 Lipoxygenase O.I. C.G. H.G.
13.5 99.4 151.0 At3g23920 821975 BAM1 (BETA-AMYLASE 1) Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3. O.I. C.G. H.G.
13.4 99.4 69.1 At4g17230 827435 SCL13 (Scarecrow-like 13) Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. O.I. C.G. H.G.
13.0 99.4 72.1 At1g48320 841252 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
121.4	99.9	22.3	At3g53790	824546	TRFL4 (TRF-LIKE 4)	Arabidopsis thaliana telomere-binding protein, putative (At3g53790)	O.I.	C.G.	H.G.
52.5	99.8	17.3	At1g61610	842457	S-locus lectin protein kinase family protein	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
48.7	99.8	199.3	At3g09350	820091	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
48.0	99.8	86.5	At1g61120	842405	TPS04 (TERPENE SYNTHASE 04)	Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.	O.I.	C.G.	H.G.
47.4	99.8	100.4	At2g20340	816553	tyrosine decarboxylase, putative	F:pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity;P:amino acid metabolic process, response to wounding;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
46.0	99.8	59.3	At1g32870	840181	ANAC13 (Arabidopsis thaliana NAC domain protein 13)	F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
38.5	99.8	168.3	At4g03050	828104	AOP3	Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.	O.I.	C.G.	H.G.
38.3	99.8	47.8	At1g05100	839324	MAPKKK18	member of MEKK subfamily	O.I.	C.G.	H.G.
38.0	99.8	18.3	At3g28600	822490	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
37.4	99.7	155.8	At1g44350	841026	ILL6	encodes a protein similar to IAA amino acid conjugate hydrolase.	O.I.	C.G.	H.G.
35.4	99.7	153.6	At1g51760	841602	IAR3 (IAA-ALANINE RESISTANT 3)	encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.	O.I.	C.G.	H.G.
34.1	99.7	163.2	At3g51860	824349	CAX3 (CATION EXCHANGER 3)	F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAM	O.I.	C.G.	H.G.
33.9	99.7	154.4	At4g05020	825844	NDB2 (NAD(P)H dehydrogenase B2)	F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAM	O.I.	C.G.	H.G.
33.9	99.7	52.4	At1g74430	843784	MYB95 (myb domain protein 95)	Encodes a putative transcription factor (MYB95).	O.I.	C.G.	H.G.
32.7	99.7	160.3	At3g06500	819828	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB	O.I.	C.G.	H.G.
32.1	99.7	33.6	At1g66080	842922	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
31.4	99.7	139.2	At3g25780	822169	AOC3 (ALLENE OXIDE CYCLASE 3)	Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.	O.I.	C.G.	H.G.
31.4	99.7	57.3	At5g55120	835603	VTC5 (VITAMIN C DEFECTIVE 5)	Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2.	O.I.	C.G.	H.G.
29.1	99.7	74.5	At1g01560	839523	ATMPK11	member of MAP Kinase	O.I.	C.G.	H.G.
29.0	99.7	118.3	At1g17380	838310	JAZ5 (JASMONATE-ZIM-DOMAIN PROTEIN 5)	F:molecular_function unknown;P:response to jasmonic acid stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
28.7	99.7	88.3	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
28.7	99.7	50.4	At2g46510	819262	ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)	Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.	O.I.	C.G.	H.G.
28.4	99.7	122.1	At5g12010	831074	unknown protein	F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO	O.I.	C.G.	H.G.
28.1	99.7	50.7	At4g27940	828907	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
28.0	99.7	94.6	At2g16900	816192	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POMVFBA	O.I.	C.G.	H.G.
27.8	99.7	69.9	At2g36630	818235	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPA	O.I.	C.G.	H.G.
27.4	99.7	32.6	At3g14440	820667	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.	O.I.	C.G.	H.G.
26.7	99.7	147.0	At3g51450	824308	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF	O.I.	C.G.	H.G.
25.8	99.7	90.1	At3g53780	824545	rhomboid family protein	F:unknown;P:unknown;C:plasma membrane;BOMPAF	O.I.	C.G.	H.G.
25.6	99.7	106.6	At5g51440	835218	23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)	F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM	O.I.	C.G.	H.G.
25.6	99.7	33.8	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
25.2	99.6	37.4	At2g25140	817052	CLPB4 (CASEIN LYTIC PROTEINASE B4)	Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.	O.I.	C.G.	H.G.
24.7	99.6	206.2	At2g29450	817494	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002)	O.I.	C.G.	H.G.
24.6	99.6	148.2	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
23.7	99.6	31.5	At2g43320	818933	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFB	O.I.	C.G.	H.G.
23.3	99.6	142.7	At1g20510	838639	OPCL1 (OPC-8:0 COA LIGASE1)	F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding;C:peroxisome;BOFMPAV	O.I.	C.G.	H.G.
23.3	99.6	27.7	At5g53750	835456	-	F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.9	99.6	50.9	At1g19300	838512	PARVUS (PARVUS)	The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.	O.I.	C.G.	H.G.
22.8	99.6	11.6	At3g44560	823581	FAR8 (FATTY ACID REDUCTASE 8)	F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFP	O.I.	C.G.	H.G.
22.4	99.6	52.1	At3g14200	820637	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
22.3	99.6	47.9	At2g32140	817773	transmembrane receptor	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PBO	O.I.	C.G.	H.G.
21.7	99.6	68.8	At3g55130	824679	ATWBC19 (White-Brown Complex homolog 19)	Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin.	O.I.	C.G.	H.G.
21.5	99.6	29.7	At4g15660	827243	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
21.4	99.6	160.8	At5g13200	831159	GRAM domain-containing protein / ABA-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
20.7	99.6	195.4	At5g12030	831076	AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)	Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.	O.I.	C.G.	H.G.
20.5	99.6	55.3	At5g47730	834824	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	F:transporter activity, binding;P:transport;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
20.1	99.6	65.3	At5g27520	832812	PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2)	encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth.	O.I.	C.G.	H.G.
19.9	99.6	123.5	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
19.4	99.6	39.2	At3g53810	824548	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
19.1	99.6	200.4	At4g27410	828849	RD26 (RESPONSIVE TO DESICCATION 26)	Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.	O.I.	C.G.	H.G.
19.1	99.6	145.1	At1g52890	841722	ANAC019 (Arabidopsis NAC domain containing protein 19)	encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.	O.I.	C.G.	H.G.
18.9	99.5	52.8	At5g57150	835821	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVO	O.I.	C.G.	H.G.
18.6	99.5	13.7	At2g44580	819066	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
18.4	99.5	96.0	At5g13220	831162	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	Plants overexpressing At5g13220.3, but not At5g13220.1 showed enhanced insensitivity to MeJa.	O.I.	C.G.	H.G.
17.7	99.5	89.5	At1g18590	838440	SOT17 (SULFOTRANSFERASE 17)	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	O.I.	C.G.	H.G.
17.6	99.5	33.5	At3g08970	820049	ATERDJ3A	J domain protein localized in ER lumen. Can compensate for the growth defect in jem1 scj1 mutant yeast. Also shows similarity to HSP40 proteins and is induced by heat stress. At high temperatures, mutant alleles are not transmitted through the pollen due to defects in pollen tube growth.	O.I.	C.G.	H.G.
17.5	99.5	145.4	At1g74310	843771	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.	O.I.	C.G.	H.G.
17.4	99.5	22.8	At1g18710	838453	AtMYB47 (myb domain protein 47)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
16.8	99.5	112.6	At5g12020	831075	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM	O.I.	C.G.	H.G.
16.8	99.5	85.1	At1g10170	837555	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1)	Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	O.I.	C.G.	H.G.
16.6	99.5	273.6	At4g01870	828228	tolB protein-related	F:molecular_function unknown;P:response to cyclopentenone;C:cellular_component unknown;OBPFAM	O.I.	C.G.	H.G.
16.5	99.5	54.3	At3g25610	822148	haloacid dehalogenase-like hydrolase family protein	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAV	O.I.	C.G.	H.G.
16.2	99.5	27.7	At2g30540	817603	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
16.1	99.5	221.3	At1g19670	838554	ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1)	Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation.	O.I.	C.G.	H.G.
16.1	99.5	158.1	At1g72450	843577	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.	O.I.	C.G.	H.G.
16.1	99.5	45.2	At4g08170	826367	inositol 1,3,4-trisphosphate 5/6-kinase family protein	F:magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity;P:response to wounding;C:nucleus, cytoplasm;PMOB	O.I.	C.G.	H.G.
15.8	99.5	214.8	At2g24850	817022	TAT3 (TYROSINE AMINOTRANSFERASE 3)	Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.	O.I.	C.G.	H.G.
15.8	99.5	58.0	At5g62570	836377	calmodulin-binding protein	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.7	99.5	132.8	At1g70700	843407	TIFY7	JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
15.3	99.4	215.8	At4g34150	829563	C2 domain-containing protein	F:unknown;P:response to cold;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
15.3	99.4	161.6	At4g24380	828540	unknown protein	F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB	O.I.	C.G.	H.G.
15.3	99.4	153.5	At2g29420	817491	ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid.	O.I.	C.G.	H.G.
15.3	99.4	94.5	At2g46400	819248	WRKY46	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
15.2	99.4	79.9	At3g21230	821677	4CL5 (4-coumarate:CoA ligase 5)	The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.	O.I.	C.G.	H.G.
15.0	99.4	58.6	At4g17615	827481	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation.	O.I.	C.G.	H.G.
15.0	99.4	44.1	At3g22740	821845	HMT3	homocysteine S-methyltransferase (HMT3)	O.I.	C.G.	H.G.
14.9	99.4	236.2	At1g19180	838501	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	JAZ1 is a nuclear-localized protein involved in jasmonate signaling. JAZ1 transcript levels rise in response to a jasmonate stimulus. JAZ1 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ1:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. The Jas domain appears to be important for JAZ1-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.	O.I.	C.G.	H.G.
14.9	99.4	44.6	At4g35600	829712	CONNEXIN 32	plant-type connexin (gap junction-type protein), a component of plasmodesmata	O.I.	C.G.	H.G.
14.8	99.4	153.5	At1g61890	842485	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
14.8	99.4	117.4	At4g37370	829891	CYP81D8	member of CYP81D	O.I.	C.G.	H.G.
14.8	99.4	34.6	At5g57050	835809	ABI2 (ABA INSENSITIVE 2)	Encodes a protein phosphatase 2C and is involved in ABA signal transduction. Binds fibrillin preprotein in vitro and in vivo.	O.I.	C.G.	H.G.
14.6	99.4	146.6	At1g74950	843834	TIFY10B	F:molecular_function unknown;P:response to jasmonic acid stimulus, response to wounding;C:cellular_component unknown;P	O.I.	C.G.	H.G.
14.6	99.4	73.8	At5g48150	834867	PAT1 (phytochrome a signal transduction 1)	Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.	O.I.	C.G.	H.G.
14.6	99.4	60.8	At5g58770	835991	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP	O.I.	C.G.	H.G.
14.6	99.4	56.4	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
14.5	99.4	25.9	At3g50760	824240	GATL2 (Galacturonosyltransferase-like 2)	Encodes a protein with putative galacturonosyltransferase activity.	O.I.	C.G.	H.G.
14.3	99.4	70.3	At5g42380	834244	CML37 (CALMODULIN LIKE 37)	F:calcium ion binding;P:response to ozone;C:chloroplast;MPOFBV	O.I.	C.G.	H.G.
14.2	99.4	163.5	At2g41730	818772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.2	99.4	70.2	At3g28210	822447	PMZ	Encodes a putative zinc finger protein (PMZ).	O.I.	C.G.	H.G.
14.1	99.4	156.8	At5g26030	832672	FC1 (ferrochelatase 1)	encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins	O.I.	C.G.	H.G.
14.1	99.4	126.7	At2g46650	819277	CB5-C (CYTOCHROME B5 ISOFORM C)	member of Cytochromes b5	O.I.	C.G.	H.G.
13.9	99.4	104.9	At1g27770	839670	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	O.I.	C.G.	H.G.
13.9	99.4	76.9	At2g42760	818876	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
13.8	99.4	90.0	At2g46240	819232	BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6)	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	O.I.	C.G.	H.G.
13.7	99.4	158.0	At1g07400	837252	17.8 kDa class I heat shock protein (HSP17.8-CI)	F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
13.7	99.4	98.0	At3g51660	824329	macrophage migration inhibitory factor family protein / MIF family protein	F:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOB	O.I.	C.G.	H.G.
13.6	99.4	83.7	At1g17420	838314	LOX3	Lipoxygenase	O.I.	C.G.	H.G.
13.5	99.4	151.0	At3g23920	821975	BAM1 (BETA-AMYLASE 1)	Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3.	O.I.	C.G.	H.G.
13.4	99.4	69.1	At4g17230	827435	SCL13 (Scarecrow-like 13)	Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.	O.I.	C.G.	H.G.
13.0	99.4	72.1	At1g48320	841252	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.

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GSM ID	GSM275643
Assay name	flu_2h
GSE experiment	GSE10876: Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids

Microarray experiments to specifically-expressed genes

GSM ID GSM275643 Assay name flu_2h GSE experiment GSE10876: Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids

GSM ID GSM275643

Assay name flu_2h

GSE experiment GSE10876: Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids