Microarray experiments to specifically-expressed genes

GSM ID GSM275642
Assay name flu_60min
GSE experiment GSE10876: Expression data from Arabidopsis thaliana (Ler) rosette leaves after the release of singlet oxygen inside plastids

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
58.499.8104.8At5g01540831722LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1)Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.O.I.C.G.H.G.
48.799.8131.4At4g02200827516drought-responsive family proteinF:unknown;P:response to water deprivation;C:unknown;PMO.I.C.G.H.G.
46.899.8165.2At2g46400819248WRKY46member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
41.699.8124.8At3g49530824115anac062 (Arabidopsis NAC domain containing protein 62)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
37.399.7171.6At1g27770839670ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.O.I.C.G.H.G.
36.999.7126.2At3g57530824920CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32)Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitroO.I.C.G.H.G.
34.099.790.9At5g66210836753CPK28member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
32.699.7104.8At2g01150814644RHA2B (RING-H2 FINGER PROTEIN 2B)Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils.O.I.C.G.H.G.
30.799.7111.7At2g24600816996ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
29.999.745.7At5g64870836610-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, vacuole;BOMFPAO.I.C.G.H.G.
28.399.7127.4At1g72520843584lipoxygenase, putativeF:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFOO.I.C.G.H.G.
28.399.777.7At5g62570836377calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.499.784.3At1g51700841595ADOF1Encodes dof zinc finger protein (adof1).O.I.C.G.H.G.
27.199.7141.3At4g03050828104AOP3Transcriptional silent in leaf tissues of ecotype Col. The transcribed allele in ecotype Ler encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of hydroxyalkyl glucosinolates among different ecotypes of Arabidopsis.O.I.C.G.H.G.
26.999.730.1At3g46110823754unknown proteinF:unknown;P:unknown;C:plasma membrane;PO.I.C.G.H.G.
26.399.749.7At2g33580817923protein kinase family protein / peptidoglycan-binding LysM domain-containing proteinF:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
26.399.748.4At3g486503769688-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
26.099.744.2At1g56510842104WRR4 (WHITE RUST RESISTANCE 4)TIR-NB-LRR protein that confers resistance to four races of Albugo candida.O.I.C.G.H.G.
25.999.758.4At2g39650818548unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
23.899.694.5At2g26190817159calmodulin-binding family proteinF:calmodulin binding;P:N-terminal protein myristoylation;C:unknown;PFOBO.I.C.G.H.G.
23.599.6267.9At4g34150829563C2 domain-containing proteinF:unknown;P:response to cold;C:unknown;MPFOBVAO.I.C.G.H.G.
23.599.6155.0At4g23180828417CRK10 (CYSTEINE-RICH RLK10)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
21.999.646.6At1g24140839026matrixin family proteinF:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAFO.I.C.G.H.G.
21.599.6137.2At5g15950831452adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
21.599.690.1At2g01180814646ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.O.I.C.G.H.G.
21.599.664.1At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
20.199.626.5At1g66080842922unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
19.799.688.4At2g47060819320serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
19.699.6123.9At3g51860824349CAX3 (CATION EXCHANGER 3)F:cation:cation antiporter activity, calcium:cation antiporter activity, calcium:hydrogen antiporter activity;P:in 9 processes;C:plant-type vacuole membrane, vacuolar membrane, vacuole;BFOPAMO.I.C.G.H.G.
19.499.677.6At2g17040816209anac036 (Arabidopsis NAC domain containing protein 36)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
18.999.598.4At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.O.I.C.G.H.G.
18.599.535.3At1g35210840410unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
18.399.5163.7At5g47910834842RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D)NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.O.I.C.G.H.G.
18.399.547.4At5g41740834177disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAO.I.C.G.H.G.
18.199.550.3At5g24590832530--O.I.C.G.H.G.
17.599.528.8At2g30540817603glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
17.499.542.5At1g73805843716calmodulin bindingF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
17.199.5172.4At5g26030832672FC1 (ferrochelatase 1)encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteinsO.I.C.G.H.G.
17.099.5127.4At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAO.I.C.G.H.G.
16.599.559.1At5g47070834753protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
16.299.536.9At3g21890821744zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;POO.I.C.G.H.G.
16.199.5196.7At1g19380838521unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.199.5179.8At2g38470818429WRKY33Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.O.I.C.G.H.G.
15.399.4196.5At3g45640823706ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.O.I.C.G.H.G.
15.199.4255.2At5g42050834210-F:molecular_function unknown;P:unknown;C:unknown;OMPFBVO.I.C.G.H.G.
15.099.464.9At5g66070836739zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFVBO.I.C.G.H.G.
14.799.4106.0At2g37940818371-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPO.I.C.G.H.G.
14.699.4145.4At2g40140818605CZF1F:transcription factor activity;P:defense response to fungus, response to cold, response to chitin, regulation of transcription;C:cellular_component unknown;MPOFBAVO.I.C.G.H.G.
14.599.448.7At2g29720817522CTF2BEncodes CTF2B.O.I.C.G.H.G.
14.599.419.2At3g44350823560anac061 (Arabidopsis NAC domain containing protein 61)F:transcription factor activity;P:multicellular organismal development, response to chitin, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
14.499.454.1At2g32030817763GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFPAVMO.I.C.G.H.G.
14.399.421.5At1g14480838010protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
14.199.440.2At1g51660841591ATMKK4 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4)Encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activates MPK3/MPK6 and early-defense genes redundantly with MKK5. In plants with both MKK5 and MKK6 levels reduced by RNAi plants, floral organs do not abscise suggestion a role for both proteins in mediating floral organ abscission.O.I.C.G.H.G.
13.699.465.4At3g47430823897PEX11Bmember of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation.O.I.C.G.H.G.
13.499.437.3At2g201422745551transmembrane receptorF:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
13.399.4269.4At2g31880817746leucine-rich repeat transmembrane protein kinase, putativeEncodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs.O.I.C.G.H.G.
13.399.437.1At1g11050837646protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
13.299.427.5At2g19710816490unknown proteinF:unknown;P:biological_process unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
13.099.421.6At4g23610828461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.999.344.7At1g59910842285formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVAO.I.C.G.H.G.
12.899.3105.5At4g17900827514zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.899.364.1At5g61900836311BON1 (BONZAI 1)Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.O.I.C.G.H.G.
12.799.3137.1At3g55980824764SZF1 (SALT-INDUCIBLE ZINC FINGER 1)F:transcription factor activity;P:response to chitin, regulation of transcription;C:cellular_component unknown;MOPBFAVO.I.C.G.H.G.
12.799.369.7At1g73800--O.I.C.G.H.G.
12.699.359.1At1g13210837881ACA.l (autoinhibited Ca2+/ATPase II)F:calmodulin binding, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, phospholipid transport, ATP biosynthetic process;C:plasma membrane;MBOFPAO.I.C.G.H.G.
12.599.366.2At4g18880827622AT-HSFA4Amember of Heat Stress Transcription Factor (Hsf) familyO.I.C.G.H.G.
12.499.366.5At4g17230827435SCL13 (Scarecrow-like 13)Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.O.I.C.G.H.G.
12.399.3175.3At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFO.I.C.G.H.G.
12.399.3126.5At3g56710824838SIB1 (SIGMA FACTOR BINDING PROTEIN 1)Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts.O.I.C.G.H.G.
12.299.3212.5At1g19770838565ATPUP14Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
12.099.3144.5At5g44070834430CAD1 (CADMIUM SENSITIVE 1)Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.O.I.C.G.H.G.
11.999.337.0At3g48090823964EDS1 (enhanced disease susceptibility 1)Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.O.I.C.G.H.G.
11.999.317.6At3g09870820145auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:endomembrane system;POO.I.C.G.H.G.
11.799.3117.0At2g26530817194AR781unknown functionO.I.C.G.H.G.
11.799.321.9At4g15660827243glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOBO.I.C.G.H.G.
11.499.3111.0At4g30210829144ATR2 (ARABIDOPSIS P450 REDUCTASE 2)Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.O.I.C.G.H.G.
11.499.380.2At5g04720830350ADR1-L2 (ADR1-like 2)F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFAO.I.C.G.H.G.
11.399.353.0At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBO.I.C.G.H.G.
11.299.236.5At3g26980822315MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PFO.I.C.G.H.G.
11.199.284.4At5g58430835956ATEXO70B1 (exocyst subunit EXO70 family protein B1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.O.I.C.G.H.G.
11.199.215.7At1g12880837845atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12)F:hydrolase activity;P:biological_process unknown;C:unknown;BMPOFO.I.C.G.H.G.
11.099.2127.9At1g50740841496unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;MPBOFO.I.C.G.H.G.
11.099.260.5At2g18210816336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.999.274.0At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.O.I.C.G.H.G.
10.899.2129.8At3g50950824259disease resistance protein (CC-NBS-LRR class), putativeF:ATP binding;P:defense response, apoptosis;C:cellular_component unknown;PMBFOVAO.I.C.G.H.G.
10.899.228.6At4g36550829807binding / ubiquitin-protein ligaseF:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBVO.I.C.G.H.G.
10.799.2159.3At1g76600843993unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;PO.I.C.G.H.G.
10.699.2193.8At5g19240832044unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.699.221.1At4g23190828418CRK11 (CYSTEINE-RICH RLK11)Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
10.499.242.6At5g46710834714zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;POMO.I.C.G.H.G.
10.399.2288.8At4g12720826884NUDT7Encodes a protein with ADP-ribose hydrolase activity. Negatively regulates EDS1-conditioned plant defense and programmed cell death.O.I.C.G.H.G.
10.399.264.3At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.O.I.C.G.H.G.
10.399.218.0At5g66850836819MAPKKK5member of MEKK subfamilyO.I.C.G.H.G.
10.299.2229.4At5g13190831158-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
10.299.235.2At3g14200820637DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
10.299.228.4At3g53810824548lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.199.233.4At1g53440841779leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
10.199.213.7At1g30810839963transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;MFPOO.I.C.G.H.G.
10.099.2169.5At5g63790836499ANAC102 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 102)Encodes a member of the NAC family of transcription factors. ANAC102 appears to have a role in mediating response to low oxygen stress (hypoxia) in germinating seedlings.O.I.C.G.H.G.
10.099.292.8At3g11820820355SYP121 (SYNTAXIN OF PLANTS 121)Encodes a syntaxin localized at the plasma membrane (SYR1, Syntaxin Related Protein 1, also known as SYP121, PENETRATION1/PEN1). SYR1/PEN1 is a member of the SNARE superfamily proteins. SNARE proteins are involved in cell signaling, vesicle traffic, growth and development. SYR1/PEN1 functions in positioning anchoring of the KAT1 K+ channel protein at the plasma membrane. Transcription is upregulated by abscisic acid, suggesting a role in ABA signaling. Also functions in non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. SYR1/PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus. Required for mlo resistance.O.I.C.G.H.G.



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