CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM275416

Assay name Azucena root tip_Before the wax layer_Rep3

GSE experiment GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
55.5 99.9 2.1 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein O.I. C.G. H.G.
44.8 99.9 0.2 Os11g0689100 AK108692.1 - Disease resistance protein family protein 2e+0 At4g22400 unknown protein O.I. C.G. H.G.
40.9 99.9 7.9 Os03g0121300 AK064633.1 - Peroxidase 1 9e-3 At5g14130 peroxidase, putative O.I. C.G. H.G.
40.5 99.9 27.5 Os06g0652600 AK101495.1 - Lustrin A 2e-1 At2g40970 myb family transcription factor O.I. C.G. H.G.
34.8 99.8 0.6 Os04g0308400 CB965389 - Conserved hypothetical protein 1e+1 At3g48020 - O.I. C.G. H.G.
33.7 99.8 4.9 Os01g0327000 NM_183815.1 - Conserved hypothetical protein 7e-7 At1g14540 anionic peroxidase, putative O.I. C.G. H.G.
31.3 99.7 23.1 Os02g0699500 AK062786.1 - Hypothetical protein 1e+0 At1g51355 unknown protein O.I. C.G. H.G.
31.1 99.7 3.1 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. C.G. H.G.
28.3 99.6 0.6 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - O.I. C.G. H.G.
27.8 99.6 0.2 Os04g0641700 9632.m05337 - - 9e+0 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) O.I. C.G. H.G.
26.5 99.5 19.2 Os01g0222500 AK072778.1 - Vacuolar ATP synthase subunit E (EC 3.6.3.14)(V-ATPase E subunit) (Vacuolar proton pump E subunit) 3e+0 At4g30230 unknown protein O.I. C.G. H.G.
26.4 99.5 6.2 Os04g0107600 AK058573.1 - Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC) 1e+0 At5g08139 zinc finger (C3HC4-type RING finger) family protein O.I. C.G. H.G.
25.0 99.5 6.2 Os01g0251100 AK073778.1 - Ribosomal protein L3 family protein 2e-16 At3g17465 RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) O.I. C.G. H.G.
24.8 99.5 3.4 Os01g0812800 AK062929.1 - 60S ribosomal protein L30 1e-3 At3g18740 60S ribosomal protein L30 (RPL30C) O.I. C.G. H.G.
24.4 99.4 0.6 Os01g0598000 AK068878.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-4 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) O.I. C.G. H.G.
24.1 99.4 0.3 Os11g0687800 AK103221.1 - Disease resistance protein family protein 4e-1 At2g27670 unknown protein O.I. C.G. H.G.
23.5 99.4 6.0 Os02g0611400 AK101310.1 - Protein prenyltransferase domain containingprotein 3e-1 At3g44950 glycine-rich protein O.I. C.G. H.G.
23.2 99.3 2.1 Os12g0633200 AK100870.1 - Protein of unknown function UPF0143 family protein 1e+0 At3g18700 - O.I. C.G. H.G.
23.1 99.3 8.6 Os03g0370500 AK063289.1 - - 4e-34 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) O.I. C.G. H.G.
23.1 99.3 2.8 Os04g0532100 AK109281.1 - Short-chain dehydrogenase/reductase SDR familyprotein 2e-1 At3g59710 short-chain dehydrogenase/reductase (SDR) family protein O.I. C.G. H.G.
22.8 99.3 0.9 Os04g0308300 9632.m02269 - Conserved hypothetical protein 8e-1 At2g34110 - O.I. C.G. H.G.
22.8 99.3 0.6 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. C.G. H.G.
22.3 99.3 3.6 Os04g0621800 AK063017.1 - - 2e+0 At1g05060 unknown protein O.I. C.G. H.G.
22.1 99.3 5.7 Os02g0639600 AK101968.1 - MLD (Sphingolipid delta 4 desaturase protein DES1) 3e-9 At4g04930 DES-1-LIKE O.I. C.G. H.G.
21.9 99.3 28.7 Os06g0319700 AK120884.1 - 60S ribosomal protein L31 3e-20 At5g56710 60S ribosomal protein L31 (RPL31C) O.I. C.G. H.G.
21.7 99.2 12.7 Os05g0156700 CB676901 - Mercuric reductase family protein 4e-68 At3g16950 LPD1 (LIPOAMIDE DEHYDROGENASE 1) O.I. C.G. H.G.
20.9 99.2 3.2 Os05g0554100 AK073023.1 - Ribosomal protein L7/L12 family protein 2e-3 At3g06040 ribosomal protein L12 family protein O.I. C.G. H.G.
20.5 99.1 3.9 Os04g0132500 AK121779.1 - Protein kinase domain containing protein 5e-4 At3g24240 leucine-rich repeat transmembrane protein kinase, putative O.I. C.G. H.G.
20.4 99.1 0.1 Os12g0552900 AK101637.1 - Disease resistance protein family protein 4e-1 At4g09340 SPla/RYanodine receptor (SPRY) domain-containing protein O.I. C.G. H.G.
20.3 99.1 26.4 Os04g0308500 AK108905.1 - Conserved hypothetical protein 7e+0 At3g12830 auxin-responsive family protein O.I. C.G. H.G.
20.3 99.1 2.3 Os02g0811800 AK119257.1 - Conserved hypothetical protein 5e-2 At5g58490 cinnamoyl-CoA reductase family O.I. C.G. H.G.
20.1 99.1 14.2 Os01g0695100 AY551100.1 - Phosphoethanolamine methyltransferase 4e-37 At1g48600 phosphoethanolamine N-methyltransferase 2, putative (NMT2) O.I. C.G. H.G.
19.3 99.0 8.1 Os05g0194600 AK102487.1 - Peptidase M22, O-sialoglycoprotein family protein 1e-5 At4g22720 glycoprotease M22 family protein O.I. C.G. H.G.
19.2 99.0 1.8 Os01g0579800 AK111319.1 - Hypothetical protein 3e-1 At2g34250 protein transport protein sec61, putative O.I. C.G. H.G.
19.2 99.0 1.8 Os07g0529700 AK073731.1 - Xyloglucan endo-transglycosylase-like protein 1e-15 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
55.5	99.9	2.1	Os07g0524900	AK071512.1	-	Protein of unknown function DUF6 domain containingprotein	3e+0	At4g16240	unknown protein	O.I.	C.G.	H.G.
44.8	99.9	0.2	Os11g0689100	AK108692.1	-	Disease resistance protein family protein	2e+0	At4g22400	unknown protein	O.I.	C.G.	H.G.
40.9	99.9	7.9	Os03g0121300	AK064633.1	-	Peroxidase 1	9e-3	At5g14130	peroxidase, putative	O.I.	C.G.	H.G.
40.5	99.9	27.5	Os06g0652600	AK101495.1	-	Lustrin A	2e-1	At2g40970	myb family transcription factor	O.I.	C.G.	H.G.
34.8	99.8	0.6	Os04g0308400	CB965389	-	Conserved hypothetical protein	1e+1	At3g48020	-	O.I.	C.G.	H.G.
33.7	99.8	4.9	Os01g0327000	NM_183815.1	-	Conserved hypothetical protein	7e-7	At1g14540	anionic peroxidase, putative	O.I.	C.G.	H.G.
31.3	99.7	23.1	Os02g0699500	AK062786.1	-	Hypothetical protein	1e+0	At1g51355	unknown protein	O.I.	C.G.	H.G.
31.1	99.7	3.1	Os10g0459700	AK110328.1	-	Xyloglucan galactosyltransferase	7e-2	At4g13990	exostosin family protein	O.I.	C.G.	H.G.
28.3	99.6	0.6	Os02g0183000	9630.m00818	-	Zinc-binding protein	2e-5	At2g12646	-	O.I.	C.G.	H.G.
27.8	99.6	0.2	Os04g0641700	9632.m05337	-	-	9e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	C.G.	H.G.
26.5	99.5	19.2	Os01g0222500	AK072778.1	-	Vacuolar ATP synthase subunit E (EC 3.6.3.14)(V-ATPase E subunit) (Vacuolar proton pump E subunit)	3e+0	At4g30230	unknown protein	O.I.	C.G.	H.G.
26.4	99.5	6.2	Os04g0107600	AK058573.1	-	Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)	1e+0	At5g08139	zinc finger (C3HC4-type RING finger) family protein	O.I.	C.G.	H.G.
25.0	99.5	6.2	Os01g0251100	AK073778.1	-	Ribosomal protein L3 family protein	2e-16	At3g17465	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	O.I.	C.G.	H.G.
24.8	99.5	3.4	Os01g0812800	AK062929.1	-	60S ribosomal protein L30	1e-3	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	C.G.	H.G.
24.4	99.4	0.6	Os01g0598000	AK068878.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-4	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	C.G.	H.G.
24.1	99.4	0.3	Os11g0687800	AK103221.1	-	Disease resistance protein family protein	4e-1	At2g27670	unknown protein	O.I.	C.G.	H.G.
23.5	99.4	6.0	Os02g0611400	AK101310.1	-	Protein prenyltransferase domain containingprotein	3e-1	At3g44950	glycine-rich protein	O.I.	C.G.	H.G.
23.2	99.3	2.1	Os12g0633200	AK100870.1	-	Protein of unknown function UPF0143 family protein	1e+0	At3g18700	-	O.I.	C.G.	H.G.
23.1	99.3	8.6	Os03g0370500	AK063289.1	-	-	4e-34	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	C.G.	H.G.
23.1	99.3	2.8	Os04g0532100	AK109281.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	2e-1	At3g59710	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	C.G.	H.G.
22.8	99.3	0.9	Os04g0308300	9632.m02269	-	Conserved hypothetical protein	8e-1	At2g34110	-	O.I.	C.G.	H.G.
22.8	99.3	0.6	Os04g0467000	AK073154.1	-	Conserved hypothetical protein	2e+0	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	O.I.	C.G.	H.G.
22.3	99.3	3.6	Os04g0621800	AK063017.1	-	-	2e+0	At1g05060	unknown protein	O.I.	C.G.	H.G.
22.1	99.3	5.7	Os02g0639600	AK101968.1	-	MLD (Sphingolipid delta 4 desaturase protein DES1)	3e-9	At4g04930	DES-1-LIKE	O.I.	C.G.	H.G.
21.9	99.3	28.7	Os06g0319700	AK120884.1	-	60S ribosomal protein L31	3e-20	At5g56710	60S ribosomal protein L31 (RPL31C)	O.I.	C.G.	H.G.
21.7	99.2	12.7	Os05g0156700	CB676901	-	Mercuric reductase family protein	4e-68	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	O.I.	C.G.	H.G.
20.9	99.2	3.2	Os05g0554100	AK073023.1	-	Ribosomal protein L7/L12 family protein	2e-3	At3g06040	ribosomal protein L12 family protein	O.I.	C.G.	H.G.
20.5	99.1	3.9	Os04g0132500	AK121779.1	-	Protein kinase domain containing protein	5e-4	At3g24240	leucine-rich repeat transmembrane protein kinase, putative	O.I.	C.G.	H.G.
20.4	99.1	0.1	Os12g0552900	AK101637.1	-	Disease resistance protein family protein	4e-1	At4g09340	SPla/RYanodine receptor (SPRY) domain-containing protein	O.I.	C.G.	H.G.
20.3	99.1	26.4	Os04g0308500	AK108905.1	-	Conserved hypothetical protein	7e+0	At3g12830	auxin-responsive family protein	O.I.	C.G.	H.G.
20.3	99.1	2.3	Os02g0811800	AK119257.1	-	Conserved hypothetical protein	5e-2	At5g58490	cinnamoyl-CoA reductase family	O.I.	C.G.	H.G.
20.1	99.1	14.2	Os01g0695100	AY551100.1	-	Phosphoethanolamine methyltransferase	4e-37	At1g48600	phosphoethanolamine N-methyltransferase 2, putative (NMT2)	O.I.	C.G.	H.G.
19.3	99.0	8.1	Os05g0194600	AK102487.1	-	Peptidase M22, O-sialoglycoprotein family protein	1e-5	At4g22720	glycoprotease M22 family protein	O.I.	C.G.	H.G.
19.2	99.0	1.8	Os01g0579800	AK111319.1	-	Hypothetical protein	3e-1	At2g34250	protein transport protein sec61, putative	O.I.	C.G.	H.G.
19.2	99.0	1.8	Os07g0529700	AK073731.1	-	Xyloglucan endo-transglycosylase-like protein	1e-15	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	C.G.	H.G.

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GSM ID	GSM275416
Assay name	Azucena root tip_Before the wax layer_Rep3
GSE experiment	GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

Microarray experiments to specifically-expressed genes

GSM ID GSM275416 Assay name Azucena root tip_Before the wax layer_Rep3 GSE experiment GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

GSM ID GSM275416

Assay name Azucena root tip_Before the wax layer_Rep3

GSE experiment GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties