CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM275414

Assay name Azucena root tip_Before the wax layer_rep1

GSE experiment GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
50.8 99.9 66.1 Os04g0308500 AK108905.1 - Conserved hypothetical protein 7e+0 At3g12830 auxin-responsive family protein O.I. C.G. H.G.
38.9 99.8 0.9 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative O.I. C.G. H.G.
36.9 99.8 26.8 Os01g0222500 AK072778.1 - Vacuolar ATP synthase subunit E (EC 3.6.3.14)(V-ATPase E subunit) (Vacuolar proton pump E subunit) 3e+0 At4g30230 unknown protein O.I. C.G. H.G.
32.5 99.8 22.1 Os06g0652600 AK101495.1 - Lustrin A 2e-1 At2g40970 myb family transcription factor O.I. C.G. H.G.
32.0 99.7 1.2 Os07g0524900 AK071512.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g16240 unknown protein O.I. C.G. H.G.
28.8 99.6 6.7 Os04g0107600 AK058573.1 - Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC) 1e+0 At5g08139 zinc finger (C3HC4-type RING finger) family protein O.I. C.G. H.G.
27.1 99.6 3.9 Os01g0327000 NM_183815.1 - Conserved hypothetical protein 7e-7 At1g14540 anionic peroxidase, putative O.I. C.G. H.G.
25.4 99.5 3.5 Os01g0812800 AK062929.1 - 60S ribosomal protein L30 1e-3 At3g18740 60S ribosomal protein L30 (RPL30C) O.I. C.G. H.G.
25.3 99.5 0.7 Os03g0861300 AK109024.1 - Aquaporin 1e-4 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) O.I. C.G. H.G.
24.4 99.4 4.7 Os03g0121300 AK064633.1 - Peroxidase 1 9e-3 At5g14130 peroxidase, putative O.I. C.G. H.G.
23.9 99.4 2.6 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. C.G. H.G.
23.7 99.4 2.9 Os03g0421800 AK099491.1 - Pectin lyase-like family protein 2e+0 At4g27520 plastocyanin-like domain-containing protein O.I. C.G. H.G.
23.7 99.4 2.1 Os12g0633200 AK100870.1 - Protein of unknown function UPF0143 family protein 1e+0 At3g18700 - O.I. C.G. H.G.
22.4 99.3 0.1 Os11g0689100 AK108692.1 - Disease resistance protein family protein 2e+0 At4g22400 unknown protein O.I. C.G. H.G.
20.7 99.2 7.7 Os03g0370500 AK063289.1 - - 4e-34 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) O.I. C.G. H.G.
20.7 99.2 1.1 Os12g0176300 AK105185.1 - Hypothetical protein 3e-1 At1g68907 - O.I. C.G. H.G.
20.3 99.1 33.1 Os10g0113100 AK103772.1 - Aldo/keto reductase family protein 2e-1 At2g37760 aldo/keto reductase family protein O.I. C.G. H.G.
19.8 99.1 2.6 Os04g0688200 AK101245.1 - Anionic peroxidase precursor 3e-5 At1g60140 ATTPS10 (trehalose phosphate synthase) O.I. C.G. H.G.
19.5 99.1 4.9 Os01g0251100 AK073778.1 - Ribosomal protein L3 family protein 2e-16 At3g17465 RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) O.I. C.G. H.G.
19.4 99.0 2.4 Os01g0788200 AK073030.1 - Nuclear transport factor 2 domain containingprotein 2e-3 At1g27970 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) O.I. C.G. H.G.
19.4 99.0 1.8 Os09g0414900 AK059073.1 - GASA5-like protein (Fragment) 6e-3 At3g10185 - O.I. C.G. H.G.
19.3 99.0 2.2 Os02g0581200 AK062477.1 - Conserved hypothetical protein 2e+0 At4g24026 unknown protein O.I. C.G. H.G.
19.1 99.0 0.3 Os02g0814300 AK111376.1 - Cytochrome c domain containing protein 1e+0 At4g00030 plastid-lipid associated protein PAP / fibrillin family protein O.I. C.G. H.G.
19.0 99.0 1.9 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
50.8	99.9	66.1	Os04g0308500	AK108905.1	-	Conserved hypothetical protein	7e+0	At3g12830	auxin-responsive family protein	O.I.	C.G.	H.G.
38.9	99.8	0.9	Os04g0494600	AK110895.1	-	Protein of unknown function DUF642 family protein	5e-2	At3g17410	serine/threonine protein kinase, putative	O.I.	C.G.	H.G.
36.9	99.8	26.8	Os01g0222500	AK072778.1	-	Vacuolar ATP synthase subunit E (EC 3.6.3.14)(V-ATPase E subunit) (Vacuolar proton pump E subunit)	3e+0	At4g30230	unknown protein	O.I.	C.G.	H.G.
32.5	99.8	22.1	Os06g0652600	AK101495.1	-	Lustrin A	2e-1	At2g40970	myb family transcription factor	O.I.	C.G.	H.G.
32.0	99.7	1.2	Os07g0524900	AK071512.1	-	Protein of unknown function DUF6 domain containingprotein	3e+0	At4g16240	unknown protein	O.I.	C.G.	H.G.
28.8	99.6	6.7	Os04g0107600	AK058573.1	-	Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)	1e+0	At5g08139	zinc finger (C3HC4-type RING finger) family protein	O.I.	C.G.	H.G.
27.1	99.6	3.9	Os01g0327000	NM_183815.1	-	Conserved hypothetical protein	7e-7	At1g14540	anionic peroxidase, putative	O.I.	C.G.	H.G.
25.4	99.5	3.5	Os01g0812800	AK062929.1	-	60S ribosomal protein L30	1e-3	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	C.G.	H.G.
25.3	99.5	0.7	Os03g0861300	AK109024.1	-	Aquaporin	1e-4	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	C.G.	H.G.
24.4	99.4	4.7	Os03g0121300	AK064633.1	-	Peroxidase 1	9e-3	At5g14130	peroxidase, putative	O.I.	C.G.	H.G.
23.9	99.4	2.6	Os02g0454500	AK064156.1	-	Membrane bound O-acyl transferase, MBOAT familyprotein	5e-5	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	C.G.	H.G.
23.7	99.4	2.9	Os03g0421800	AK099491.1	-	Pectin lyase-like family protein	2e+0	At4g27520	plastocyanin-like domain-containing protein	O.I.	C.G.	H.G.
23.7	99.4	2.1	Os12g0633200	AK100870.1	-	Protein of unknown function UPF0143 family protein	1e+0	At3g18700	-	O.I.	C.G.	H.G.
22.4	99.3	0.1	Os11g0689100	AK108692.1	-	Disease resistance protein family protein	2e+0	At4g22400	unknown protein	O.I.	C.G.	H.G.
20.7	99.2	7.7	Os03g0370500	AK063289.1	-	-	4e-34	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	C.G.	H.G.
20.7	99.2	1.1	Os12g0176300	AK105185.1	-	Hypothetical protein	3e-1	At1g68907	-	O.I.	C.G.	H.G.
20.3	99.1	33.1	Os10g0113100	AK103772.1	-	Aldo/keto reductase family protein	2e-1	At2g37760	aldo/keto reductase family protein	O.I.	C.G.	H.G.
19.8	99.1	2.6	Os04g0688200	AK101245.1	-	Anionic peroxidase precursor	3e-5	At1g60140	ATTPS10 (trehalose phosphate synthase)	O.I.	C.G.	H.G.
19.5	99.1	4.9	Os01g0251100	AK073778.1	-	Ribosomal protein L3 family protein	2e-16	At3g17465	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	O.I.	C.G.	H.G.
19.4	99.0	2.4	Os01g0788200	AK073030.1	-	Nuclear transport factor 2 domain containingprotein	2e-3	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	C.G.	H.G.
19.4	99.0	1.8	Os09g0414900	AK059073.1	-	GASA5-like protein (Fragment)	6e-3	At3g10185	-	O.I.	C.G.	H.G.
19.3	99.0	2.2	Os02g0581200	AK062477.1	-	Conserved hypothetical protein	2e+0	At4g24026	unknown protein	O.I.	C.G.	H.G.
19.1	99.0	0.3	Os02g0814300	AK111376.1	-	Cytochrome c domain containing protein	1e+0	At4g00030	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	C.G.	H.G.
19.0	99.0	1.9	Os10g0459700	AK110328.1	-	Xyloglucan galactosyltransferase	7e-2	At4g13990	exostosin family protein	O.I.	C.G.	H.G.

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GSM ID	GSM275414
Assay name	Azucena root tip_Before the wax layer_rep1
GSE experiment	GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

Microarray experiments to specifically-expressed genes

GSM ID GSM275414 Assay name Azucena root tip_Before the wax layer_rep1 GSE experiment GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties

GSM ID GSM275414

Assay name Azucena root tip_Before the wax layer_rep1

GSE experiment GSE10857: Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties