Microarray experiments to specifically-expressed genes

GSM ID GSM27364
Assay name lec1-1 Rosette Leaf
GSE experiment GSE680: Transcript Profiling of Arabidopsis Plant Life Cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
56.899.8167.7At1g30250839905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
44.799.886.7At5g59080836025unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:chloroplast;PO.I.C.G.H.G.
43.899.842.0At3g62950825470glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFOO.I.C.G.H.G.
34.199.7110.1At4g17230827435SCL13 (Scarecrow-like 13)Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.O.I.C.G.H.G.
30.099.735.5At3g22460821817OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)Encodes a member of a family of genes with O-acetylserine(thiol)lyase activity.O.I.C.G.H.G.
29.699.744.8At1g75230843860HhH-GPD base excision DNA repair family proteinF:catalytic activity;P:DNA repair, base-excision repair;C:nucleus;OBFPAMO.I.C.G.H.G.
27.599.720.0At2g150403768475-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
26.299.795.8At2g39980818586transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
24.799.6153.6At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAO.I.C.G.H.G.
23.499.679.2At3g13062820493-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
22.999.6134.1At1g01140839349CIPK9 (CBL-INTERACTING PROTEIN KINASE 9)Encodes a CBL-interacting protein kinase with similarity to SOS2O.I.C.G.H.G.
22.899.648.5At3g61210825293embryo-abundant protein-relatedF:unknown;P:unknown;C:cellular_component unknown;BPFOMAO.I.C.G.H.G.
22.299.639.0At1g23840838995unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
21.899.6116.0At1g15010838066unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
21.899.625.5At1g18710838453AtMYB47 (myb domain protein 47)Member of the R2R3 factor gene family.O.I.C.G.H.G.
21.599.656.7At2g38790818461unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
21.399.6107.0At3g14050820619RSH2 (RELA-SPOT HOMOLOG 2)F:GTP diphosphokinase activity;P:response to abscisic acid stimulus, response to wounding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
20.499.6113.0At5g02020831782unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
20.499.632.0At2g45660819174AGL20 (AGAMOUS-LIKE 20)Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.O.I.C.G.H.G.
20.199.649.3At1g65480842859FT (FLOWERING LOCUS T)FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.O.I.C.G.H.G.
19.499.616.6At1g75250843862ATRL6 (ARABIDOPSIS RAD-LIKE 6)F:transcription factor activity;P:regulation of transcription;C:unknown;PMOO.I.C.G.H.G.
19.199.663.8At5g62570836377calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
18.399.5148.9At5g13200831159GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
17.499.561.4At3g06780819863glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
16.699.555.3At4g11330826735ATMPK5 (MAP KINASE 5)MAP kinaseO.I.C.G.H.G.
16.599.549.8At5g64240836545AtMC3 (metacaspase 3)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPAO.I.C.G.H.G.
16.299.5118.0At5g06870830578PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.O.I.C.G.H.G.
16.299.511.9At3g01960821109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.899.5111.3At3g06500819828beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putativeF:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPBO.I.C.G.H.G.
15.699.556.8At1g02300839576cathepsin B-like cysteine protease, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
15.499.595.5At2g27830817330-F:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
15.399.4158.0At3g61060825278AtPP2-A13 (Arabidopsis thaliana phloem protein 2-A13)F:carbohydrate binding;P:N-terminal protein myristoylation, response to wounding;C:unknown;PO.I.C.G.H.G.
15.099.448.1At3g06080819781unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.799.453.6At3g50260824188CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
14.799.428.6At1g64380842745AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
14.699.4164.6At2g29670817517bindingF:binding;P:unknown;C:chloroplast;PBOAMO.I.C.G.H.G.
14.399.4171.0At2g18700816385ATTPS11Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
14.099.4107.8At5g54170835505-F:molecular_function unknown;P:response to wounding;C:unknown;MPOO.I.C.G.H.G.
14.099.427.3At1g11960837748-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOBO.I.C.G.H.G.
13.999.426.6At5g22390832300unknown proteinF:unknown;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
13.899.4170.3At4g27410828849RD26 (RESPONSIVE TO DESICCATION 26)Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response.O.I.C.G.H.G.
13.899.450.0At2g03730814900ACR5Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding.O.I.C.G.H.G.
13.699.418.5At1g31350840024F-box family proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
13.599.457.3At5g66210836753CPK28member of Calcium Dependent Protein KinaseO.I.C.G.H.G.
13.599.455.1At1g32540840148LOL1 (LSD ONE LIKE 1)Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.O.I.C.G.H.G.
13.399.4143.7At1g72450843577JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.O.I.C.G.H.G.
13.299.4103.6At4g19420827683pectinacetylesterase family proteinF:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBAO.I.C.G.H.G.
13.099.444.3At5g66490836781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
13.099.439.5At4g16780827384ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2)Encodes a homeodomain-leucine zipper protein that is rapidly and strongly induced by changes in the ratio of red to far-red light. It is also involved in cell expansion and cell proliferation and in the response to auxin.O.I.C.G.H.G.
12.999.3108.2At1g70290843365ATTPS8Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.O.I.C.G.H.G.
12.899.354.8At3g29035822547ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500.O.I.C.G.H.G.
12.899.325.3At1g18810838463phytochrome kinase substrate-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVO.I.C.G.H.G.
12.799.371.2At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
12.799.335.1At2g47880819400glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFBOO.I.C.G.H.G.
12.799.323.2At4g16000827284unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
12.599.364.3At1g28370839733ERF11 (ERF DOMAIN PROTEIN 11)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
12.499.3166.8At3g52800824446zinc finger (AN1-like) family proteinF:DNA binding, zinc ion binding;P:response to chitin;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
12.399.356.4At1g77210844057sugar transporter, putativeF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOAO.I.C.G.H.G.
12.299.3104.6At1g73920843729lipase family proteinF:lipase activity;P:glycerol biosynthetic process, lipid metabolic process;C:cellular_component unknown;MFPOO.I.C.G.H.G.
12.299.345.1At1g53170841751ERF8encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
12.199.3141.3At4g22570828353APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1.O.I.C.G.H.G.
12.199.364.9At1g10340837573ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
12.199.353.7At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.
12.099.378.4At4g39640830118GGT1 (GAMMA-GLUTAMYL TRANSPEPTIDASE 1)The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathione) in the apoplast.O.I.C.G.H.G.
12.099.358.2At5g43190834337F-box family protein (FBX6)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFOO.I.C.G.H.G.
11.899.3159.3At1g21000838694zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.899.3114.6At4g38550830012-F:unknown;P:unknown;C:chloroplast;MFPOBVAO.I.C.G.H.G.
11.799.335.7At1g69270843258RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1)RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1.O.I.C.G.H.G.
11.799.37.1At5g04190830297PKS4 (phytochrome kinase substrate 4)Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism.O.I.C.G.H.G.
11.699.3136.3At1g61890842485MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
11.699.370.3At2g21185816654unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.499.354.0At2g28630817412KCS12 (3-KETOACYL-COA SYNTHASE 12)Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
11.499.353.3At4g37790829935HAT22Encodes homeobox protein HAT22, member of the HD-Zip II family.O.I.C.G.H.G.
11.499.323.8At3g01490821136protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
11.499.37.6At1g528108417142-oxoglutarate-dependent dioxygenase-relatedF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
11.299.257.9At2g31800817737ankyrin protein kinase, putativeF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:regulation of signal transduction, protein amino acid phosphorylation;C:unknown;MOPBFVAO.I.C.G.H.G.
11.199.2401.9At4g35770829730SEN1 (SENESCENCE 1)Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.O.I.C.G.H.G.
11.199.2233.3At3g13750820584BGAL1 (Beta galactosidase 1)beta-galactosidase, glycosyl hydrolase family 35O.I.C.G.H.G.
11.199.2166.4At5g09220830781AAP2 (AMINO ACID PERMEASE 2)member of AAAP familyO.I.C.G.H.G.
11.199.2111.5At1g70700843407TIFY7JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.O.I.C.G.H.G.
11.099.223.9At1g34180840317anac016 (Arabidopsis NAC domain containing protein 16)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
11.099.29.2At4g29050829026lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.999.235.7At3g03870821099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
10.899.231.1At2g35820818155unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
10.699.2185.3At1g67870843115glycine-rich proteinF:unknown;P:biological_process unknown;C:unknown;MOBPFAVO.I.C.G.H.G.
10.599.248.6At2g25200817058unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.599.237.9At3g52070824370unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
10.599.237.4At1g66900843008-F:unknown;P:biological_process unknown;C:cellular_component unknown;OBMPFVO.I.C.G.H.G.
10.599.29.8At1g03020839505glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
10.499.2263.1At5g49730835036ATFRO6 (FERRIC REDUCTION OXIDASE 6)Encodes a plasma membrane-located ferric chelate reductase. Its mRNA is expressed in green aerial tissues (shoot, flower and cotyledon) in a light- and cell differentiation-specific manner.O.I.C.G.H.G.
10.499.2148.8At5g18600831978glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
10.499.251.3At3g09830820141protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
10.399.2253.4At2g15960816091unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.399.2171.4At1g80440844383kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFAO.I.C.G.H.G.
10.399.239.6At1g78070844142-F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;PFOO.I.C.G.H.G.
10.299.259.2At1g58200842187MSL3 (MscS-LIKE 3)A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity.O.I.C.G.H.G.
10.199.2222.8At5g56870835789BGAL4 (beta-galactosidase 4)F:beta-galactosidase activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;PBMFOAO.I.C.G.H.G.
10.199.244.6At1g33050840200unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPO.I.C.G.H.G.
10.199.236.2At3g53960824563proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
10.199.232.9At2g28305817376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAMO.I.C.G.H.G.



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