Microarray experiments to specifically-expressed genes

GSM ID GSM27362
Assay name WT Stem
GSE experiment GSE680: Transcript Profiling of Arabidopsis Plant Life Cycle

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
210.8100.0154.3At1g80170844357polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:plant-type cell wall;FPBOMAO.I.C.G.H.G.
157.799.9134.5At3g59845825154NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress;C:unknown;BOFMPAO.I.C.G.H.G.
157.199.9200.5At1g22480838854plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFOO.I.C.G.H.G.
130.999.944.6At1g32770840171ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12)Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.O.I.C.G.H.G.
123.899.946.1At1g79420844280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
122.099.9214.9At5g60490836170FLA12F:unknown;P:unknown;C:plasma membrane, anchored to membrane;PBOMAFO.I.C.G.H.G.
114.699.9238.7At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.O.I.C.G.H.G.
114.599.9221.7At3g16920820947chitinaseF:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOFO.I.C.G.H.G.
109.799.9239.8At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFO.I.C.G.H.G.
95.899.935.2At4g28500828968ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;POO.I.C.G.H.G.
95.399.9111.8At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.O.I.C.G.H.G.
94.999.964.9At3g18660821397PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.O.I.C.G.H.G.
89.599.9151.6At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).O.I.C.G.H.G.
82.799.955.2At3g15050820734IQD10 (IQ-domain 10)F:calmodulin binding;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
82.199.9105.8At5g54690835558GAUT12 (GALACTURONOSYLTRANSFERASE 12)Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).O.I.C.G.H.G.
78.899.970.6At2g29130817462LAC2 (laccase 2)putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydrationO.I.C.G.H.G.
75.699.9124.5At4g27435828852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
72.999.934.0At5g59305836049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
71.899.930.6At1g68200843149zinc finger (CCCH-type) family proteinF:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MOPFO.I.C.G.H.G.
70.899.961.1At1g61810842478BGLU45 (BETA-GLUCOSIDASE 45)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
65.599.883.2At5g67210836856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
63.199.842.0At2g41610818759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
59.899.846.3At3g50220824184unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
57.899.8138.1At1g72230843555plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBO.I.C.G.H.G.
56.199.842.2At1g27380839627RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.O.I.C.G.H.G.
55.199.8153.7At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
55.199.855.8At5g05390830421LAC12 (laccase 12)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
49.799.892.2At3g62020825375GLP10 (GERMIN-LIKE PROTEIN 10)germin-like protein (GLP10)O.I.C.G.H.G.
47.199.8247.0At5g42180834223peroxidase 64 (PER64) (P64) (PRXR4)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBMO.I.C.G.H.G.
46.999.8125.5At5g23860832451TUB8beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.O.I.C.G.H.G.
46.399.850.8At5g06930830584-F:unknown;P:unknown;C:chloroplast;OMBFPVAO.I.C.G.H.G.
46.299.872.3At1g19300838512PARVUS (PARVUS)The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.O.I.C.G.H.G.
45.299.835.5At1g19940838583AtGH9B5 (Arabidopsis thaliana Glycosyl Hydrolase 9B5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
44.099.862.6At1g73640843698AtRABA6a (Arabidopsis Rab GTPase homolog A6a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.C.G.H.G.
43.199.829.3At1g69080843240universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMO.I.C.G.H.G.
42.499.864.9At1g27440839635GUT2F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:endomembrane system, membrane;PMOBFO.I.C.G.H.G.
42.299.817.5At2g31900817748XIFEncodes an novel myosin isoform.O.I.C.G.H.G.
41.599.815.0At4g28380828954leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
37.799.7130.1At2g03090814838ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
35.999.790.8At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.C.G.H.G.
33.199.745.2At1g08340837354rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBAO.I.C.G.H.G.
32.999.757.9At3g23090821884-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBAO.I.C.G.H.G.
32.999.722.7At1g09440837467protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
32.799.737.1At2g40480818643unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFVO.I.C.G.H.G.
32.699.762.7At1g78970844237LUP1 (LUPEOL SYNTHASE 1)Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.O.I.C.G.H.G.
32.499.786.7At2g03200814849aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMOO.I.C.G.H.G.
31.999.732.4At4g10390826631protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:response to wounding;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
31.899.748.4At4g26220828728caffeoyl-CoA 3-O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAO.I.C.G.H.G.
31.199.7130.0At3g21190821672unknown proteinF:unknown;P:unknown;C:Golgi apparatus;PO.I.C.G.H.G.
31.099.785.3At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
30.899.777.5At4g27430828851CIP7 (COP1-INTERACTING PROTEIN 7)Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression.O.I.C.G.H.G.
30.699.7122.3At3g10340820196PAL4 (Phenylalanine ammonia-lyase 4)F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMAO.I.C.G.H.G.
29.399.780.3At2g28760817426NAD-dependent epimerase/dehydratase family proteinF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:plasma membrane;OBPMAFVO.I.C.G.H.G.
28.699.737.2At4g23496828449SP1L5 (SPIRAL1-LIKE5)Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.O.I.C.G.H.G.
27.799.723.7At2g44745819083WRKY family transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POO.I.C.G.H.G.
27.699.742.0At2g39850818572identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
27.599.796.0At4g08150826364KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.O.I.C.G.H.G.
26.999.730.9At5g14090831258unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
26.599.7137.4At5g59290836047UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.O.I.C.G.H.G.
26.499.761.9At4g21650828252subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
26.499.734.5At5g03190831909CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)F:molecular_function unknown;P:biological_process unknown;C:unknown;POBO.I.C.G.H.G.
26.199.715.2At1g09610837488unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
25.799.729.2At2g23360816868transport protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAVO.I.C.G.H.G.
25.599.730.8At2g40120818603protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPFBVAO.I.C.G.H.G.
25.599.715.8At2g31930817751unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.299.6149.7At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)O.I.C.G.H.G.
25.199.647.5At2g35820818155unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
24.999.6424.3At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
24.799.6307.0At1g75280843865isoflavone reductase, putativeisoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.O.I.C.G.H.G.
24.799.613.9At1g75590843894auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
23.499.645.2At2g37090818285IRX9 (IRREGULAR XYLEM 9)The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis.O.I.C.G.H.G.
23.199.611.7At1g47485841156-Encodes CEP1, a 15-amino-acid peptide, which is mainly expressed in the lateral root primordia. When overexpressed or externally applied, CEP1 arrests root growth. CEP1 is a candidate for a novel peptide plant hormone.O.I.C.G.H.G.
22.799.673.8At1g53290841763galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOBO.I.C.G.H.G.
22.699.6113.8At5g03760831734ATCSLA09encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.O.I.C.G.H.G.
22.299.683.3At5g54980835589integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.999.6200.2At5g12250831100TUB6 (BETA-6 TUBULIN)Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.O.I.C.G.H.G.
21.599.6142.3At5g53370835418PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMOO.I.C.G.H.G.
21.299.6108.1At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.O.I.C.G.H.G.
20.799.619.1At1g54790841920GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
20.699.620.1At1g79620844301leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
20.299.625.1At3g42950823351glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
19.899.688.9At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
19.299.676.0At2g35860818159FLA16 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 PRECURSOR)F:unknown;P:cell adhesion;C:endomembrane system;BMPOFAVO.I.C.G.H.G.
18.999.568.6At4g37790829935HAT22Encodes homeobox protein HAT22, member of the HD-Zip II family.O.I.C.G.H.G.
18.999.515.9At1g72220843554zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
18.299.553.0At3g26960822314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.299.552.4At1g33800840272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
17.899.525.0At1g31320840020LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.299.536.1At5g24310832498ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVO.I.C.G.H.G.
17.099.528.5At1g11080837649scpl31 (serine carboxypeptidase-like 31)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBO.I.C.G.H.G.
16.799.521.0At3g25620822149ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPVO.I.C.G.H.G.
16.699.5123.4At5g07460830637PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.O.I.C.G.H.G.
16.699.552.3At2g31110817667unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.599.548.2At5g46340834677O-acetyltransferase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
16.199.555.1At5g60020836124LAC17 (laccase 17)putative laccase, a member of laccase family of genes (17 members in Arabidopsis).O.I.C.G.H.G.
16.199.518.1At5g16600831522MYB43 (myb domain protein 43)Encodes a putative transcription factor (MYB43).O.I.C.G.H.G.
15.799.572.3At1g25530839139lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBAO.I.C.G.H.G.
15.699.565.3At3g21550821709unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
15.699.510.2At1g07120837222-F:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;POMFBO.I.C.G.H.G.
15.499.517.6At2g28870817436unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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