Microarray experiments to specifically-expressed genes

GSM ID GSM270866
Assay name Arabidopsis cell culture, 4 h_response to phytoprostane A1_rep1
GSE experiment GSE10719: Response of Arabidopsis cell culture to phytoprostane A1

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
468.1100.096.7At1g630403767616-a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
442.9100.0405.9At1g19610838548PDF1.4Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
393.0100.0157.0At2g03020814831heat shock protein-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:cellular_component unknown;PBOO.I.C.G.H.G.
378.5100.0322.4At4g36350829787PAP25 (PURPLE ACID PHOSPHATASE 25)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMFAO.I.C.G.H.G.
371.3100.0322.7At2g44460819053BGLU28 (BETA GLUCOSIDASE 28)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFAO.I.C.G.H.G.
358.6100.0243.2At5g02780831800In2-1 protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFAO.I.C.G.H.G.
294.8100.042.1At4g13700827004PAP23 (PURPLE ACID PHOSPHATASE 23)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFAO.I.C.G.H.G.
288.4100.0213.8At2g46880819301PAP14 (PURPLE ACID PHOSPHATASE 14)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;FBPOO.I.C.G.H.G.
219.3100.0113.3At2g45570819165CYP76C2member of CYP76CO.I.C.G.H.G.
219.1100.0431.8At1g17710838347phosphataseF:phosphatase activity;P:metabolic process;C:unknown;MPOBFO.I.C.G.H.G.
195.1100.021.0At4g078503770287transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
194.0100.0251.7At4g19810827725glycosyl hydrolase family 18 proteinF:cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall;BMFOVPAO.I.C.G.H.G.
169.3100.096.6At5g39720833968AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFAO.I.C.G.H.G.
166.4100.038.6At3g23950821978F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
163.399.985.0At2g04890815036SCL21 (SCARECROW-LIKE 21)Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family.O.I.C.G.H.G.
160.599.979.1At1g19200838503senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
157.599.9447.9At2g02990814828RNS1 (RIBONUCLEASE 1)member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.O.I.C.G.H.G.
155.999.974.1At1g72070843538DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:unknown;BOMPFAVO.I.C.G.H.G.
146.099.976.4At2g34790818044MEE23 (MATERNAL EFFECT EMBRYO ARREST 23)F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:embryonic development ending in seed dormancy, polar nucleus fusion;C:cell wall;BFPOAMO.I.C.G.H.G.
138.299.9144.2At2g45130819120SPX3 (SPX DOMAIN GENE 3)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:cellular_component unknown;FMPOO.I.C.G.H.G.
137.499.979.4At3g28580822488AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to abscisic acid stimulus;C:endoplasmic reticulum;OMBFPAVO.I.C.G.H.G.
131.099.9104.5At1g68290843158ENDO 2 (endonuclease 2)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.O.I.C.G.H.G.
130.699.9205.6At2g38740818456haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:plasma membrane;BOFPMAVO.I.C.G.H.G.
129.399.9257.3At1g65500842862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
128.699.9254.7At1g69930843329ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
126.699.988.8At4g31240829251-F:unknown;P:cell redox homeostasis;C:cellular_component unknown;OMBPO.I.C.G.H.G.
126.199.918.4At2g34210817982structural constituent of ribosome / transcription elongation regulator/ transcription initiation factorF:transcription elongation regulator activity, structural constituent of ribosome, transcription initiation factor activity;P:regulation of transcription from RNA polymerase II promoter, translation, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFAPBVO.I.C.G.H.G.
125.099.939.7At1g56710842127glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
123.899.966.5At1g32960840190SBT3.3F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFMO.I.C.G.H.G.
117.299.929.5At1g66830843001leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
116.399.9185.8At5g20790832202unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
113.799.979.8At4g24890828591PAP24 (PURPLE ACID PHOSPHATASE 24)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cell wall;PBOMFO.I.C.G.H.G.
105.499.923.4At2g38940818479ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2)phosphate transporter (AtPT2)O.I.C.G.H.G.
103.599.9122.2At3g47780823932ATATH6member of ATH subfamilyO.I.C.G.H.G.
101.199.9202.2At4g21470828232ATFMN/FHY (riboflavin kinase/FMN hydrolase)Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN.O.I.C.G.H.G.
101.199.9128.2At5g52390835315photoassimilate-responsive protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
99.799.923.2At1g27860839679unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
97.799.9118.8At4g03960825706tyrosine specific protein phosphatase family proteinF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBMO.I.C.G.H.G.
93.999.9221.0At4g31860829315protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.C.G.H.G.
92.099.980.1At3g28150822439unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
91.699.9236.8At1g69880843324ATH8 (thioredoxin H-type 8)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
91.399.9181.1At2g02560814786CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1.O.I.C.G.H.G.
89.099.9124.6At2g01190814647octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinF:unknown;P:unknown;C:cytosol, nucleus;MFPOBVAO.I.C.G.H.G.
87.299.919.6At3g28155822441-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
87.199.936.8At3g43110823370unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
83.699.9167.7At1g63290842635ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putativeF:ribulose-phosphate 3-epimerase activity, catalytic activity;P:carbohydrate metabolic process, metabolic process;C:plasma membrane;OBMFPAO.I.C.G.H.G.
80.899.942.1At5g11410831012protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
80.699.9127.4At3g29200822573CM1 (CHORISMATE MUTASE 1)L-ascorbate peroxidaseO.I.C.G.H.G.
80.399.9389.0At5g22060832267ATJ2Co-chaperonin similar to E. coli DnaJO.I.C.G.H.G.
78.799.988.0At1g141308379722-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFMO.I.C.G.H.G.
77.099.940.4At3g28230822449-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBO.I.C.G.H.G.
75.399.9282.6At1g73010843632phosphataseF:phosphatase activity;P:metabolic process;C:cellular_component unknown;MPOBFO.I.C.G.H.G.
75.299.989.9At4g35110829663-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
75.099.980.4At3g03530821243NPC4 (NONSPECIFIC PHOSPHOLIPASE C4)PHOSPHOESTERASE FAMILY PROTEIN, NPC4 is significantly induced upon phosphate starvation and plays an important role in the supply of inorganic phosphate and diacylglycerol from membrane-phospholipids during phosphate deprivation.O.I.C.G.H.G.
74.499.9123.1At1g01480837082ACS2a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library.O.I.C.G.H.G.
70.099.958.5At3g10450820209SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
69.799.9162.5At5g01220831888SQD2 (sulfoquinovosyldiacylglycerol 2)involved in sulfolipid biosynthesisO.I.C.G.H.G.
68.699.9115.6At2g01470814675STL2P (SEC12P-LIKE 2 PROTEIN)Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.O.I.C.G.H.G.
67.899.978.0At1g56150842068auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
67.499.8305.7At2g01490814677phytanoyl-CoA dioxygenase (PhyH) family proteinF:phytanoyl-CoA dioxygenase activity;P:N-terminal protein myristoylation;C:plasma membrane;OMBFPO.I.C.G.H.G.
65.799.882.2At1g45050841072ATUBC2-1member of ubiquitin-conjugating E2-proteinsO.I.C.G.H.G.
64.199.829.8At5g60470836168nucleic acid binding / transcription factor/ zinc ion bindingF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
64.099.8312.5At2g2950081749917.6 kDa class I small heat shock protein (HSP17.6B-CI)F:molecular_function unknown;P:response to oxidative stress, response to cyclopentenone, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAMO.I.C.G.H.G.
64.099.8125.6At3g30720822807QQS (QUA-QUINE STARCH)F:molecular_function unknown;P:starch biosynthetic process;C:cytosol;PO.I.C.G.H.G.
63.399.862.0At1g52940841727PAP5 (PURPLE ACID PHOSPHATASE 5)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:cellular_component unknown;PBOMFAO.I.C.G.H.G.
62.899.834.3At1g31070839993UDP-N-acetylglucosamine pyrophosphorylase-relatedF:nucleotidyltransferase activity;P:peptidoglycan biosynthetic process, metabolic process, UDP-N-acetylgalactosamine biosynthetic process;C:plasma membrane;MBFPOO.I.C.G.H.G.
62.399.8204.6At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
59.899.8107.3At4g21120827860AAT1 (AMINO ACID TRANSPORTER 1)Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system.O.I.C.G.H.G.
58.499.854.6At2g21730816710CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVO.I.C.G.H.G.
58.199.889.4At3g29090822556pectinesterase family proteinEncodes an atypical pectin methylesterase that does not require salt for its activity and has a blockwise mode of pectin demethylesterification.O.I.C.G.H.G.
55.699.8164.2At3g44720823601ADT4 (arogenate dehydratase 4)Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].O.I.C.G.H.G.
53.499.816.7At3g13820820594F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
53.299.828.3At5g46590834702anac096 (Arabidopsis NAC domain containing protein 96)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
52.999.843.2At4g33770829519inositol 1,3,4-trisphosphate 5/6-kinase family proteinF:inositol or phosphatidylinositol kinase activity, magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, inositol tetrakisphosphate 1-kinase activity, ATP binding;P:inositol trisphosphate metabolic process;C:intracellular;PMOO.I.C.G.H.G.
52.599.8374.2At3g2850082248060S acidic ribosomal protein P2 (RPP2C)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, plasma membrane;MFOPABO.I.C.G.H.G.
52.599.8224.6At3g02040821175SRG3 (senescence-related gene 3)F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BMOFPAVO.I.C.G.H.G.
52.599.858.3At1g08310837351esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:unknown;BPOMFAO.I.C.G.H.G.
51.999.8276.9At1g17170838288ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
51.999.8125.7At1g33490840243unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
51.699.821.4At1g66320842949F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
51.499.8109.3At4g03320827972tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)F:unknown;P:unknown;C:unknown;PBO.I.C.G.H.G.
51.199.864.0At5g04080830287unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PFO.I.C.G.H.G.
50.699.824.7At3g44520--O.I.C.G.H.G.
50.599.8473.0At4g19880827734-F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;BOFPMAO.I.C.G.H.G.
49.599.8167.3At2g01350814663QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli.O.I.C.G.H.G.
49.299.8106.9At2g01320814660ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPVO.I.C.G.H.G.
49.299.855.9At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4O.I.C.G.H.G.
48.699.855.2At1g44960841061-F:unknown;P:biological_process unknown;C:plasma membrane;BOPAMO.I.C.G.H.G.
48.099.8135.7At5g17340831600unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
47.899.847.8At1g32530840147zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
47.699.8186.5At2g01610814690invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
47.699.889.3At2g02870814818kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFAO.I.C.G.H.G.
47.199.891.0At5g24760832545alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAVO.I.C.G.H.G.
47.199.842.9At5g50130835078short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
46.499.8123.5At3g27400822361pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.C.G.H.G.
46.199.8105.2At4g18910827626NIP1Encodes an aquaporin homolog. Functions in arsenite transport and tolerance.O.I.C.G.H.G.
45.799.8263.4At5g20150832137SPX1 (SPX DOMAIN GENE 1)F:molecular_function unknown;P:cellular response to phosphate starvation, positive regulation of cellular response to phosphate starvation;C:nucleus;FMPOBAO.I.C.G.H.G.
45.199.844.7At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
44.499.812.6At1g70920843431ATHB18 (Arabidopsis thaliana homeobox-leucine zipper protein 18)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus, chloroplast;MPOFVO.I.C.G.H.G.
44.299.884.0At4g31870829316ATGPX7 (glutathione peroxidase 7)Encodes glutathione peroxidase.O.I.C.G.H.G.



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