CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM269832

Assay name T8 leaf-well watered-rep3

GSE experiment GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
66.9 99.8 176.0 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
43.7 99.8 78.5 At3g28540 822484 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
34.6 99.7 19.6 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
31.0 99.7 37.3 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
28.9 99.7 65.9 At3g49580 824120 LSU1 (RESPONSE TO LOW SULFUR 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
27.8 99.7 18.9 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
26.4 99.7 441.6 At5g52310 835307 LTI78 (LOW-TEMPERATURE-INDUCED 78) cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression O.I. C.G. H.G.
26.0 99.7 77.4 At1g73470 843682 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP O.I. C.G. H.G.
25.2 99.6 40.3 At4g18270 827553 ATTRANS11 Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development. O.I. C.G. H.G.
23.8 99.6 37.4 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
23.7 99.6 362.6 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. O.I. C.G. H.G.
23.6 99.6 27.3 At1g33720 840263 CYP76C6 member of CYP76C O.I. C.G. H.G.
22.9 99.6 85.3 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
22.8 99.6 44.3 At5g59130 836031 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
22.3 99.6 141.7 At1g70820 843419 phosphoglucomutase, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF O.I. C.G. H.G.
22.1 99.6 55.6 At5g50800 835152 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
21.5 99.6 64.6 At5g19460 832066 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP O.I. C.G. H.G.
21.4 99.6 56.9 At2g39930 818580 ISA1 (ISOAMYLASE 1) Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex. O.I. C.G. H.G.
21.3 99.6 50.9 At4g16860 827395 RPP4 (recognition of peronospora parasitica 4) Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing. O.I. C.G. H.G.
20.4 99.6 17.2 At2g15040 3768475 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
19.9 99.6 14.1 At4g11840 826790 PLDGAMMA3 member of C2-PLD subfamily O.I. C.G. H.G.
19.8 99.6 119.5 At3g45860 823729 receptor-like protein kinase, putative F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
19.4 99.6 163.9 At3g44860 823620 FAMT (farnesoic acid carboxyl-O-methyltransferase) Encodes a farnesoic acid carboxyl-O-methyltransferase. O.I. C.G. H.G.
18.9 99.5 149.6 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. O.I. C.G. H.G.
18.1 99.5 92.2 At5g48850 834943 ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1) homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools. O.I. C.G. H.G.
17.8 99.5 64.9 At1g64890 842797 integral membrane transporter family protein F:transporter activity;P:transport;C:membrane;BOPMAF O.I. C.G. H.G.
17.3 99.5 67.1 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
17.1 99.5 43.6 At4g16770 827383 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM O.I. C.G. H.G.
16.3 99.5 159.7 At2g32480 817809 membrane-associated zinc metalloprotease, putative F:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAM O.I. C.G. H.G.
16.1 99.5 184.5 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
16.0 99.5 209.4 At2g37710 818348 RLK (receptor lectin kinase) Induced in response to Salicylic acid. O.I. C.G. H.G.
15.7 99.5 24.5 At1g29720 839850 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
14.9 99.4 185.4 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
14.9 99.4 63.6 At3g56140 824780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFV O.I. C.G. H.G.
14.1 99.4 108.1 At2g15050 815994 LTP Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
14.0 99.4 223.2 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. O.I. C.G. H.G.
13.7 99.4 94.9 At2g20570 816579 GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1) Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus. O.I. C.G. H.G.
13.7 99.4 76.7 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.7 99.4 72.1 At2g01180 814646 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves. O.I. C.G. H.G.
13.7 99.4 65.9 At4g25480 828652 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A) encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. O.I. C.G. H.G.
13.5 99.4 44.7 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
13.4 99.4 49.1 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family O.I. C.G. H.G.
13.0 99.4 41.0 At5g13730 831218 SIG4 (SIGMA FACTOR 4) Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity. O.I. C.G. H.G.
12.8 99.3 45.8 At2g04066 814942 MATE efflux protein-related F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;PBOFM O.I. C.G. H.G.
12.8 99.3 23.6 At3g23110 821886 AtRLP37 (Receptor Like Protein 37) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
12.6 99.3 33.2 At3g55760 824742 unknown protein F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB O.I. C.G. H.G.
12.5 99.3 97.9 At1g73480 843683 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
12.3 99.3 72.6 At1g20650 838654 ATP binding / protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
12.3 99.3 61.7 At2g17040 816209 anac036 (Arabidopsis NAC domain containing protein 36) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
12.3 99.3 51.6 At4g13140 - - O.I. C.G. H.G.
12.2 99.3 72.8 At1g07250 837236 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
12.1 99.3 67.6 At3g26290 822232 CYP71B26 putative cytochrome P450 O.I. C.G. H.G.
12.0 99.3 94.6 At1g51805 841607 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
11.8 99.3 72.8 At2g32160 817775 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
11.7 99.3 401.6 At3g15840 820827 PIFI (post-illumination chlorophyll fluorescence increase) Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport. O.I. C.G. H.G.
11.7 99.3 325.6 At5g03350 831863 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO O.I. C.G. H.G.
11.7 99.3 8.1 At3g46370 823783 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
11.6 99.3 63.9 At4g18880 827622 AT-HSFA4A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
11.6 99.3 56.6 At5g26220 832691 ChaC-like family protein F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP O.I. C.G. H.G.
11.5 99.3 23.7 At4g21380 827890 ARK3 (A. THALIANA RECEPTOR KINASE 3) encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. O.I. C.G. H.G.
11.1 99.2 53.3 At5g58670 835981 PLC1 (PHOSPHOLIPASE C 1) phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one). O.I. C.G. H.G.
11.1 99.2 38.7 At1g13750 837935 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF O.I. C.G. H.G.
10.9 99.2 31.1 At3g48650 3769688 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
10.8 99.2 58.6 At2g46430 819251 ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance O.I. C.G. H.G.
10.8 99.2 40.2 At2g38790 818461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.7 99.2 51.0 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
10.6 99.2 29.3 At4g23990 828499 ATCSLG3 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
10.5 99.2 419.5 At5g25610 832636 RD22 responsive to dehydration 22 (RD22) mediated by ABA O.I. C.G. H.G.
10.5 99.2 184.1 At1g67870 843115 glycine-rich protein F:unknown;P:biological_process unknown;C:unknown;MOBPFAV O.I. C.G. H.G.
10.4 99.2 277.3 At4g23600 828460 CORI3 (CORONATINE INDUCED 1) Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. O.I. C.G. H.G.
10.3 99.2 368.3 At3g25760 822167 AOC1 (ALLENE OXIDE CYCLASE 1) encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. O.I. C.G. H.G.
9.9 99.1 111.4 At5g48880 834946 PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2. O.I. C.G. H.G.
9.9 99.1 51.1 At1g21270 838723 WAK2 cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. O.I. C.G. H.G.
9.9 99.1 45.9 At5g54610 835550 ANK (ankyrin) Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family. O.I. C.G. H.G.
9.8 99.1 157.0 At3g16520 820900 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:in 6 functions;P:metabolic process;C:cellular_component unknown;PMVBOF O.I. C.G. H.G.
9.8 99.1 104.6 At1g67860 843113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.8 99.1 88.9 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
9.6 99.1 130.0 At3g06510 819829 SFR2 (SENSITIVE TO FREEZING 2) Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing O.I. C.G. H.G.
9.6 99.1 97.0 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO O.I. C.G. H.G.
9.6 99.1 74.2 At2g43020 818904 ATPAO2 (Polyamine oxidase 2) F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFA O.I. C.G. H.G.
9.5 99.1 70.4 At4g12310 826840 CYP706A5 member of CYP706A O.I. C.G. H.G.
9.5 99.1 33.6 At5g54630 835552 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO O.I. C.G. H.G.
9.4 99.1 173.6 At5g65480 836673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.4 99.1 45.8 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase O.I. C.G. H.G.
9.3 99.1 47.8 At1g03400 838751 2-oxoglutarate-dependent dioxygenase, putative A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. O.I. C.G. H.G.
9.2 99.1 88.1 At3g02870 821206 VTC4 Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis. O.I. C.G. H.G.
9.1 99.1 82.2 At2g26440 817184 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
9.1 99.1 16.3 At1g79460 844284 GA2 (GA REQUIRING 2) Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway. O.I. C.G. H.G.
9.0 99.1 79.2 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 12.1 At5g43740 834394 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA O.I. C.G. H.G.
8.9 99.0 295.9 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. O.I. C.G. H.G.
8.9 99.0 50.8 At4g20170 827763 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
8.8 99.0 188.3 At2g42600 818860 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. O.I. C.G. H.G.
8.8 99.0 126.0 At2g20920 816626 unknown protein F:unknown;P:unknown;C:membrane;BPO O.I. C.G. H.G.
8.8 99.0 6.7 At4g24010 828501 ATCSLG1 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
8.7 99.0 48.7 At1g52000 841629 jacalin lectin family protein F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
66.9	99.8	176.0	At1g56600	842114	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
43.7	99.8	78.5	At3g28540	822484	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
34.6	99.7	19.6	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
31.0	99.7	37.3	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
28.9	99.7	65.9	At3g49580	824120	LSU1 (RESPONSE TO LOW SULFUR 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
27.8	99.7	18.9	At3g08870	820035	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
26.4	99.7	441.6	At5g52310	835307	LTI78 (LOW-TEMPERATURE-INDUCED 78)	cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression	O.I.	C.G.	H.G.
26.0	99.7	77.4	At1g73470	843682	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BP	O.I.	C.G.	H.G.
25.2	99.6	40.3	At4g18270	827553	ATTRANS11	Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development.	O.I.	C.G.	H.G.
23.8	99.6	37.4	At5g59670	836088	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
23.7	99.6	362.6	At3g46970	823850	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)	Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.	O.I.	C.G.	H.G.
23.6	99.6	27.3	At1g33720	840263	CYP76C6	member of CYP76C	O.I.	C.G.	H.G.
22.9	99.6	85.3	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
22.8	99.6	44.3	At5g59130	836031	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
22.3	99.6	141.7	At1g70820	843419	phosphoglucomutase, putative / glucose phosphomutase, putative	F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF	O.I.	C.G.	H.G.
22.1	99.6	55.6	At5g50800	835152	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
21.5	99.6	64.6	At5g19460	832066	atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)	F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP	O.I.	C.G.	H.G.
21.4	99.6	56.9	At2g39930	818580	ISA1 (ISOAMYLASE 1)	Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.	O.I.	C.G.	H.G.
21.3	99.6	50.9	At4g16860	827395	RPP4 (recognition of peronospora parasitica 4)	Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.	O.I.	C.G.	H.G.
20.4	99.6	17.2	At2g15040	3768475	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
19.9	99.6	14.1	At4g11840	826790	PLDGAMMA3	member of C2-PLD subfamily	O.I.	C.G.	H.G.
19.8	99.6	119.5	At3g45860	823729	receptor-like protein kinase, putative	F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
19.4	99.6	163.9	At3g44860	823620	FAMT (farnesoic acid carboxyl-O-methyltransferase)	Encodes a farnesoic acid carboxyl-O-methyltransferase.	O.I.	C.G.	H.G.
18.9	99.5	149.6	At3g52180	824383	SEX4 (STARCH-EXCESS 4)	Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.	O.I.	C.G.	H.G.
18.1	99.5	92.2	At5g48850	834943	ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)	homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.	O.I.	C.G.	H.G.
17.8	99.5	64.9	At1g64890	842797	integral membrane transporter family protein	F:transporter activity;P:transport;C:membrane;BOPMAF	O.I.	C.G.	H.G.
17.3	99.5	67.1	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
17.1	99.5	43.6	At4g16770	827383	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFM	O.I.	C.G.	H.G.
16.3	99.5	159.7	At2g32480	817809	membrane-associated zinc metalloprotease, putative	F:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAM	O.I.	C.G.	H.G.
16.1	99.5	184.5	At4g14400	827085	ACD6 (ACCELERATED CELL DEATH 6)	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	O.I.	C.G.	H.G.
16.0	99.5	209.4	At2g37710	818348	RLK (receptor lectin kinase)	Induced in response to Salicylic acid.	O.I.	C.G.	H.G.
15.7	99.5	24.5	At1g29720	839850	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
14.9	99.4	185.4	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
14.9	99.4	63.6	At3g56140	824780	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFV	O.I.	C.G.	H.G.
14.1	99.4	108.1	At2g15050	815994	LTP	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
14.0	99.4	223.2	At1g10760	837619	SEX1 (STARCH EXCESS 1)	Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.	O.I.	C.G.	H.G.
13.7	99.4	94.9	At2g20570	816579	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	O.I.	C.G.	H.G.
13.7	99.4	76.7	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.7	99.4	72.1	At2g01180	814646	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.	O.I.	C.G.	H.G.
13.7	99.4	65.9	At4g25480	828652	DREB1A (DEHYDRATION RESPONSE ELEMENT B1A)	encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid.	O.I.	C.G.	H.G.
13.5	99.4	44.7	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
13.4	99.4	49.1	At5g53130	835393	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)	member of Cyclic nucleotide gated channel family	O.I.	C.G.	H.G.
13.0	99.4	41.0	At5g13730	831218	SIG4 (SIGMA FACTOR 4)	Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.	O.I.	C.G.	H.G.
12.8	99.3	45.8	At2g04066	814942	MATE efflux protein-related	F:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;PBOFM	O.I.	C.G.	H.G.
12.8	99.3	23.6	At3g23110	821886	AtRLP37 (Receptor Like Protein 37)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
12.6	99.3	33.2	At3g55760	824742	unknown protein	F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB	O.I.	C.G.	H.G.
12.5	99.3	97.9	At1g73480	843683	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
12.3	99.3	72.6	At1g20650	838654	ATP binding / protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
12.3	99.3	61.7	At2g17040	816209	anac036 (Arabidopsis NAC domain containing protein 36)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.3	99.3	51.6	At4g13140		-	-	O.I.	C.G.	H.G.
12.2	99.3	72.8	At1g07250	837236	UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
12.1	99.3	67.6	At3g26290	822232	CYP71B26	putative cytochrome P450	O.I.	C.G.	H.G.
12.0	99.3	94.6	At1g51805	841607	leucine-rich repeat protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
11.8	99.3	72.8	At2g32160	817775	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
11.7	99.3	401.6	At3g15840	820827	PIFI (post-illumination chlorophyll fluorescence increase)	Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.	O.I.	C.G.	H.G.
11.7	99.3	325.6	At5g03350	831863	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO	O.I.	C.G.	H.G.
11.7	99.3	8.1	At3g46370	823783	leucine-rich repeat protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
11.6	99.3	63.9	At4g18880	827622	AT-HSFA4A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
11.6	99.3	56.6	At5g26220	832691	ChaC-like family protein	F:molecular_function unknown;P:response to lead ion, response to cadmium ion;C:cellular_component unknown;BMOFP	O.I.	C.G.	H.G.
11.5	99.3	23.7	At4g21380	827890	ARK3 (A. THALIANA RECEPTOR KINASE 3)	encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.	O.I.	C.G.	H.G.
11.1	99.2	53.3	At5g58670	835981	PLC1 (PHOSPHOLIPASE C 1)	phosphatidylinositol-specific phospholipase C is induced to a significant extent under various environmental stresses, such as dehydration, salinity, and low temperature. May play a role in secondary ABA response. There are two genes called ATPLC1, one corresponding to AT4g38530 and one corresponding ot AT5g58670 (this one).	O.I.	C.G.	H.G.
11.1	99.2	38.7	At1g13750	837935	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF	O.I.	C.G.	H.G.
10.9	99.2	31.1	At3g48650	3769688	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
10.8	99.2	58.6	At2g46430	819251	ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)	cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistance	O.I.	C.G.	H.G.
10.8	99.2	40.2	At2g38790	818461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.7	99.2	51.0	At1g57590	842135	carboxylesterase	F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
10.6	99.2	29.3	At4g23990	828499	ATCSLG3	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
10.5	99.2	419.5	At5g25610	832636	RD22	responsive to dehydration 22 (RD22) mediated by ABA	O.I.	C.G.	H.G.
10.5	99.2	184.1	At1g67870	843115	glycine-rich protein	F:unknown;P:biological_process unknown;C:unknown;MOBPFAV	O.I.	C.G.	H.G.
10.4	99.2	277.3	At4g23600	828460	CORI3 (CORONATINE INDUCED 1)	Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding.	O.I.	C.G.	H.G.
10.3	99.2	368.3	At3g25760	822167	AOC1 (ALLENE OXIDE CYCLASE 1)	encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway.	O.I.	C.G.	H.G.
9.9	99.1	111.4	At5g48880	834946	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.	O.I.	C.G.	H.G.
9.9	99.1	51.1	At1g21270	838723	WAK2	cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.	O.I.	C.G.	H.G.
9.9	99.1	45.9	At5g54610	835550	ANK (ankyrin)	Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.	O.I.	C.G.	H.G.
9.8	99.1	157.0	At3g16520	820900	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:in 6 functions;P:metabolic process;C:cellular_component unknown;PMVBOF	O.I.	C.G.	H.G.
9.8	99.1	104.6	At1g67860	843113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.8	99.1	88.9	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
9.6	99.1	130.0	At3g06510	819829	SFR2 (SENSITIVE TO FREEZING 2)	Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing	O.I.	C.G.	H.G.
9.6	99.1	97.0	At3g04550	819611	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO	O.I.	C.G.	H.G.
9.6	99.1	74.2	At2g43020	818904	ATPAO2 (Polyamine oxidase 2)	F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFA	O.I.	C.G.	H.G.
9.5	99.1	70.4	At4g12310	826840	CYP706A5	member of CYP706A	O.I.	C.G.	H.G.
9.5	99.1	33.6	At5g54630	835552	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO	O.I.	C.G.	H.G.
9.4	99.1	173.6	At5g65480	836673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.4	99.1	45.8	At3g26280	822231	CYP71B4	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
9.3	99.1	47.8	At1g03400	838751	2-oxoglutarate-dependent dioxygenase, putative	A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.	O.I.	C.G.	H.G.
9.2	99.1	88.1	At3g02870	821206	VTC4	Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.	O.I.	C.G.	H.G.
9.1	99.1	82.2	At2g26440	817184	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
9.1	99.1	16.3	At1g79460	844284	GA2 (GA REQUIRING 2)	Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway.	O.I.	C.G.	H.G.
9.0	99.1	79.2	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	12.1	At5g43740	834394	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA	O.I.	C.G.	H.G.
8.9	99.0	295.9	At2g14560	815943	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.	O.I.	C.G.	H.G.
8.9	99.0	50.8	At4g20170	827763	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
8.8	99.0	188.3	At2g42600	818860	ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)	Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.	O.I.	C.G.	H.G.
8.8	99.0	126.0	At2g20920	816626	unknown protein	F:unknown;P:unknown;C:membrane;BPO	O.I.	C.G.	H.G.
8.8	99.0	6.7	At4g24010	828501	ATCSLG1	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
8.7	99.0	48.7	At1g52000	841629	jacalin lectin family protein	F:molecular_function unknown;P:response to salt stress;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.

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GSM ID	GSM269832
Assay name	T8 leaf-well watered-rep3
GSE experiment	GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

Microarray experiments to specifically-expressed genes

GSM ID GSM269832 Assay name T8 leaf-well watered-rep3 GSE experiment GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

GSM ID GSM269832

Assay name T8 leaf-well watered-rep3

GSE experiment GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress