CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM269814

Assay name T6 leaf-well watered-rep1

GSE experiment GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
134.2 99.9 137.6 At3g28540 822484 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV O.I. C.G. H.G.
39.6 99.8 22.6 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
37.7 99.7 527.8 At5g52310 835307 LTI78 (LOW-TEMPERATURE-INDUCED 78) cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression O.I. C.G. H.G.
37.1 99.7 75.9 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.3 99.7 41.5 At5g59670 836088 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
27.7 99.7 61.4 At1g13750 837935 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF O.I. C.G. H.G.
27.0 99.7 139.3 At3g45860 823729 receptor-like protein kinase, putative F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
27.0 99.7 63.3 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
26.5 99.7 41.3 At4g18270 827553 ATTRANS11 Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development. O.I. C.G. H.G.
26.2 99.7 158.3 At5g37360 833710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
26.2 99.7 16.2 At4g11840 826790 PLDGAMMA3 member of C2-PLD subfamily O.I. C.G. H.G.
25.8 99.7 107.4 At2g32160 817775 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.
25.5 99.7 90.1 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO O.I. C.G. H.G.
25.4 99.6 16.8 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
24.6 99.6 102.8 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
23.8 99.6 75.0 At1g64890 842797 integral membrane transporter family protein F:transporter activity;P:transport;C:membrane;BOPMAF O.I. C.G. H.G.
23.5 99.6 53.6 At4g16860 827395 RPP4 (recognition of peronospora parasitica 4) Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing. O.I. C.G. H.G.
19.8 99.6 54.6 At3g49580 824120 LSU1 (RESPONSE TO LOW SULFUR 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
18.9 99.5 136.1 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO O.I. C.G. H.G.
18.1 99.5 23.9 At1g33720 840263 CYP76C6 member of CYP76C O.I. C.G. H.G.
17.7 99.5 545.6 At5g25610 832636 RD22 responsive to dehydration 22 (RD22) mediated by ABA O.I. C.G. H.G.
16.0 99.5 261.4 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
16.0 99.5 183.9 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
15.8 99.5 57.9 At1g02450 837800 NIMIN1 (NIM1-INTERACTING 1) NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. O.I. C.G. H.G.
15.7 99.5 749.7 At3g22231 821788 PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1) Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato. O.I. C.G. H.G.
15.7 99.5 36.4 At1g11330 837675 S-locus lectin protein kinase family protein F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
15.7 99.5 26.5 At5g52320 835308 CYP96A4 member of CYP96A O.I. C.G. H.G.
15.6 99.5 294.5 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. O.I. C.G. H.G.
15.6 99.5 113.7 At2g15050 815994 LTP Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
15.4 99.5 373.3 At5g03350 831863 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO O.I. C.G. H.G.
15.3 99.4 117.6 At1g70820 843419 phosphoglucomutase, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF O.I. C.G. H.G.
15.1 99.4 44.9 At3g09970 820158 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMVAF O.I. C.G. H.G.
14.7 99.4 60.0 At1g03400 838751 2-oxoglutarate-dependent dioxygenase, putative A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. O.I. C.G. H.G.
14.5 99.4 143.1 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
14.2 99.4 372.2 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. O.I. C.G. H.G.
13.9 99.4 138.6 At3g44860 823620 FAMT (farnesoic acid carboxyl-O-methyltransferase) Encodes a farnesoic acid carboxyl-O-methyltransferase. O.I. C.G. H.G.
13.4 99.4 122.4 At1g67860 843113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.1 99.4 124.7 At3g52180 824383 SEX4 (STARCH-EXCESS 4) Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. O.I. C.G. H.G.
13.0 99.4 61.2 At5g38990 833891 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
12.8 99.3 74.6 At1g07250 837236 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
12.8 99.3 53.6 At2g33050 817867 AtRLP26 (Receptor Like Protein 26) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
12.4 99.3 154.1 At4g19120 827650 ERD3 (early-responsive to dehydration 3) F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF O.I. C.G. H.G.
12.1 99.3 845.4 At3g22240 821794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.1 99.3 41.2 At5g50800 835152 nodulin MtN3 family protein F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO O.I. C.G. H.G.
11.9 99.3 56.9 At1g62250 842522 unknown protein F:unknown;P:unknown;C:chloroplast;P O.I. C.G. H.G.
11.9 99.3 50.4 At5g54610 835550 ANK (ankyrin) Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family. O.I. C.G. H.G.
11.7 99.3 20.8 At1g11410 837683 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.6 99.3 90.0 At1g17490 838322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.3 99.3 394.0 At3g15840 820827 PIFI (post-illumination chlorophyll fluorescence increase) Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport. O.I. C.G. H.G.
11.3 99.3 41.3 At2g39930 818580 ISA1 (ISOAMYLASE 1) Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex. O.I. C.G. H.G.
11.2 99.2 74.8 At5g51820 835257 PGM (PHOSPHOGLUCOMUTASE) Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts. O.I. C.G. H.G.
11.2 99.2 59.1 At5g16450 831506 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
11.2 99.2 31.3 At3g55760 824742 unknown protein F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB O.I. C.G. H.G.
11.0 99.2 173.6 At2g37710 818348 RLK (receptor lectin kinase) Induced in response to Salicylic acid. O.I. C.G. H.G.
10.8 99.2 17.7 At5g39020 833894 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
10.6 99.2 12.4 At2g31230 817680 ATERF15 (Ethylene-responsive element binding factor 15) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. O.I. C.G. H.G.
10.5 99.2 29.1 At4g23990 828499 ATCSLG3 encodes a protein similar to cellulose synthase O.I. C.G. H.G.
10.3 99.2 62.4 At3g26290 822232 CYP71B26 putative cytochrome P450 O.I. C.G. H.G.
10.3 99.2 31.0 At1g64810 842789 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) chloroplast APO1 O.I. C.G. H.G.
10.2 99.2 51.7 At1g21270 838723 WAK2 cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. O.I. C.G. H.G.
10.1 99.2 19.7 At1g29720 839850 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
9.7 99.1 183.3 At1g64850 842793 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.7 99.1 159.7 At1g21250 838721 WAK1 (CELL WALL-ASSOCIATED KINASE) cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. O.I. C.G. H.G.
9.7 99.1 51.0 At5g38510 833839 rhomboid family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA O.I. C.G. H.G.
9.7 99.1 10.9 At4g23320 828431 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
9.6 99.1 122.7 At2g32480 817809 membrane-associated zinc metalloprotease, putative F:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAM O.I. C.G. H.G.
9.4 99.1 59.8 At4g28740 828995 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
9.3 99.1 28.3 At5g59130 836031 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
9.2 99.1 67.3 At5g49760 835039 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA O.I. C.G. H.G.
9.2 99.1 19.2 At3g56630 824830 CYP94D2 member of CYP94D O.I. C.G. H.G.
9.1 99.1 87.7 At3g02870 821206 VTC4 Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis. O.I. C.G. H.G.
8.9 99.0 33.8 At5g13730 831218 SIG4 (SIGMA FACTOR 4) Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity. O.I. C.G. H.G.
8.8 99.0 339.7 At3g25760 822167 AOC1 (ALLENE OXIDE CYCLASE 1) encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. O.I. C.G. H.G.
8.8 99.0 84.0 At2g40750 818670 WRKY54 member of WRKY Transcription Factor; Group III O.I. C.G. H.G.
8.7 99.0 176.0 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. O.I. C.G. H.G.
8.6 99.0 47.4 At4g27300 828838 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
8.6 99.0 20.5 At4g21380 827890 ARK3 (A. THALIANA RECEPTOR KINASE 3) encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
134.2	99.9	137.6	At3g28540	822484	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
39.6	99.8	22.6	At3g08870	820035	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
37.7	99.7	527.8	At5g52310	835307	LTI78 (LOW-TEMPERATURE-INDUCED 78)	cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression	O.I.	C.G.	H.G.
37.1	99.7	75.9	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.3	99.7	41.5	At5g59670	836088	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
27.7	99.7	61.4	At1g13750	837935	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity, metal ion binding, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMF	O.I.	C.G.	H.G.
27.0	99.7	139.3	At3g45860	823729	receptor-like protein kinase, putative	F:kinase activity;P:defense response;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
27.0	99.7	63.3	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
26.5	99.7	41.3	At4g18270	827553	ATTRANS11	Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development.	O.I.	C.G.	H.G.
26.2	99.7	158.3	At5g37360	833710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
26.2	99.7	16.2	At4g11840	826790	PLDGAMMA3	member of C2-PLD subfamily	O.I.	C.G.	H.G.
25.8	99.7	107.4	At2g32160	817775	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.
25.5	99.7	90.1	At1g68600	843190	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO	O.I.	C.G.	H.G.
25.4	99.6	16.8	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
24.6	99.6	102.8	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
23.8	99.6	75.0	At1g64890	842797	integral membrane transporter family protein	F:transporter activity;P:transport;C:membrane;BOPMAF	O.I.	C.G.	H.G.
23.5	99.6	53.6	At4g16860	827395	RPP4 (recognition of peronospora parasitica 4)	Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.	O.I.	C.G.	H.G.
19.8	99.6	54.6	At3g49580	824120	LSU1 (RESPONSE TO LOW SULFUR 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
18.9	99.5	136.1	At3g04550	819611	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO	O.I.	C.G.	H.G.
18.1	99.5	23.9	At1g33720	840263	CYP76C6	member of CYP76C	O.I.	C.G.	H.G.
17.7	99.5	545.6	At5g25610	832636	RD22	responsive to dehydration 22 (RD22) mediated by ABA	O.I.	C.G.	H.G.
16.0	99.5	261.4	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
16.0	99.5	183.9	At4g14400	827085	ACD6 (ACCELERATED CELL DEATH 6)	encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.	O.I.	C.G.	H.G.
15.8	99.5	57.9	At1g02450	837800	NIMIN1 (NIM1-INTERACTING 1)	NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.	O.I.	C.G.	H.G.
15.7	99.5	749.7	At3g22231	821788	PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)	Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.	O.I.	C.G.	H.G.
15.7	99.5	36.4	At1g11330	837675	S-locus lectin protein kinase family protein	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
15.7	99.5	26.5	At5g52320	835308	CYP96A4	member of CYP96A	O.I.	C.G.	H.G.
15.6	99.5	294.5	At3g46970	823850	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)	Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.	O.I.	C.G.	H.G.
15.6	99.5	113.7	At2g15050	815994	LTP	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
15.4	99.5	373.3	At5g03350	831863	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBO	O.I.	C.G.	H.G.
15.3	99.4	117.6	At1g70820	843419	phosphoglucomutase, putative / glucose phosphomutase, putative	F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF	O.I.	C.G.	H.G.
15.1	99.4	44.9	At3g09970	820158	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMVAF	O.I.	C.G.	H.G.
14.7	99.4	60.0	At1g03400	838751	2-oxoglutarate-dependent dioxygenase, putative	A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.	O.I.	C.G.	H.G.
14.5	99.4	143.1	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
14.2	99.4	372.2	At2g14560	815943	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.	O.I.	C.G.	H.G.
13.9	99.4	138.6	At3g44860	823620	FAMT (farnesoic acid carboxyl-O-methyltransferase)	Encodes a farnesoic acid carboxyl-O-methyltransferase.	O.I.	C.G.	H.G.
13.4	99.4	122.4	At1g67860	843113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.1	99.4	124.7	At3g52180	824383	SEX4 (STARCH-EXCESS 4)	Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.	O.I.	C.G.	H.G.
13.0	99.4	61.2	At5g38990	833891	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
12.8	99.3	74.6	At1g07250	837236	UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
12.8	99.3	53.6	At2g33050	817867	AtRLP26 (Receptor Like Protein 26)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
12.4	99.3	154.1	At4g19120	827650	ERD3 (early-responsive to dehydration 3)	F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF	O.I.	C.G.	H.G.
12.1	99.3	845.4	At3g22240	821794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.1	99.3	41.2	At5g50800	835152	nodulin MtN3 family protein	F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMO	O.I.	C.G.	H.G.
11.9	99.3	56.9	At1g62250	842522	unknown protein	F:unknown;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
11.9	99.3	50.4	At5g54610	835550	ANK (ankyrin)	Induced in response to Salicylic acid. Belongs to the ankyrin repeat protein family.	O.I.	C.G.	H.G.
11.7	99.3	20.8	At1g11410	837683	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.6	99.3	90.0	At1g17490	838322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.3	99.3	394.0	At3g15840	820827	PIFI (post-illumination chlorophyll fluorescence increase)	Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.	O.I.	C.G.	H.G.
11.3	99.3	41.3	At2g39930	818580	ISA1 (ISOAMYLASE 1)	Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex.	O.I.	C.G.	H.G.
11.2	99.2	74.8	At5g51820	835257	PGM (PHOSPHOGLUCOMUTASE)	Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.	O.I.	C.G.	H.G.
11.2	99.2	59.1	At5g16450	831506	dimethylmenaquinone methyltransferase family protein	F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
11.2	99.2	31.3	At3g55760	824742	unknown protein	F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB	O.I.	C.G.	H.G.
11.0	99.2	173.6	At2g37710	818348	RLK (receptor lectin kinase)	Induced in response to Salicylic acid.	O.I.	C.G.	H.G.
10.8	99.2	17.7	At5g39020	833894	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
10.6	99.2	12.4	At2g31230	817680	ATERF15 (Ethylene-responsive element binding factor 15)	encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.	O.I.	C.G.	H.G.
10.5	99.2	29.1	At4g23990	828499	ATCSLG3	encodes a protein similar to cellulose synthase	O.I.	C.G.	H.G.
10.3	99.2	62.4	At3g26290	822232	CYP71B26	putative cytochrome P450	O.I.	C.G.	H.G.
10.3	99.2	31.0	At1g64810	842789	APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)	chloroplast APO1	O.I.	C.G.	H.G.
10.2	99.2	51.7	At1g21270	838723	WAK2	cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.	O.I.	C.G.	H.G.
10.1	99.2	19.7	At1g29720	839850	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
9.7	99.1	183.3	At1g64850	842793	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.7	99.1	159.7	At1g21250	838721	WAK1 (CELL WALL-ASSOCIATED KINASE)	cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component.	O.I.	C.G.	H.G.
9.7	99.1	51.0	At5g38510	833839	rhomboid family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA	O.I.	C.G.	H.G.
9.7	99.1	10.9	At4g23320	828431	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
9.6	99.1	122.7	At2g32480	817809	membrane-associated zinc metalloprotease, putative	F:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAM	O.I.	C.G.	H.G.
9.4	99.1	59.8	At4g28740	828995	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
9.3	99.1	28.3	At5g59130	836031	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
9.2	99.1	67.3	At5g49760	835039	leucine-rich repeat family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA	O.I.	C.G.	H.G.
9.2	99.1	19.2	At3g56630	824830	CYP94D2	member of CYP94D	O.I.	C.G.	H.G.
9.1	99.1	87.7	At3g02870	821206	VTC4	Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.	O.I.	C.G.	H.G.
8.9	99.0	33.8	At5g13730	831218	SIG4 (SIGMA FACTOR 4)	Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.	O.I.	C.G.	H.G.
8.8	99.0	339.7	At3g25760	822167	AOC1 (ALLENE OXIDE CYCLASE 1)	encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway.	O.I.	C.G.	H.G.
8.8	99.0	84.0	At2g40750	818670	WRKY54	member of WRKY Transcription Factor; Group III	O.I.	C.G.	H.G.
8.7	99.0	176.0	At1g10760	837619	SEX1 (STARCH EXCESS 1)	Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.	O.I.	C.G.	H.G.
8.6	99.0	47.4	At4g27300	828838	S-locus protein kinase, putative	F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
8.6	99.0	20.5	At4g21380	827890	ARK3 (A. THALIANA RECEPTOR KINASE 3)	encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels.	O.I.	C.G.	H.G.

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GSM ID	GSM269814
Assay name	T6 leaf-well watered-rep1
GSE experiment	GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

Microarray experiments to specifically-expressed genes

GSM ID GSM269814 Assay name T6 leaf-well watered-rep1 GSE experiment GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

GSM ID GSM269814

Assay name T6 leaf-well watered-rep1

GSE experiment GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress