Microarray experiments to specifically-expressed genes

GSM ID GSM269812
Assay name WT leaf-well watered-rep1
GSE experiment GSE10670: Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
246.5100.0186.5At3g28540822484AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFPAVO.I.C.G.H.G.
73.099.9104.9At3g49580824120LSU1 (RESPONSE TO LOW SULFUR 1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
67.199.8219.8At3g45860823729receptor-like protein kinase, putativeF:kinase activity;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
58.699.827.5At3g08870820035lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
51.999.840.5At1g33720840263CYP76C6member of CYP76CO.I.C.G.H.G.
50.599.899.0At5g19460832066atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMPO.I.C.G.H.G.
47.999.8146.4At2g32160817775-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOPO.I.C.G.H.G.
44.599.883.2At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
42.899.8135.6At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
39.899.8226.3At4g22870828386leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeF:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
38.599.8110.7At1g68600843190unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPFOO.I.C.G.H.G.
37.599.767.7At4g16860827395RPP4 (recognition of peronospora parasitica 4)Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.O.I.C.G.H.G.
33.299.7495.3At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionO.I.C.G.H.G.
31.699.784.4At2g33050817867AtRLP26 (Receptor Like Protein 26)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
30.899.7185.9At1g67860843113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
30.599.712.6At4g24010828501ATCSLG1encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
29.499.788.8At5g38510833839rhomboid family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFAO.I.C.G.H.G.
28.399.793.9At5g16450831506dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMO.I.C.G.H.G.
27.999.7114.3At5g48850834943ATSDI1 (SULPHUR DEFICIENCY-INDUCED 1)homologous to the wheat sulphate deficiency-induced gene sdi1. Expression in root and leaf is induced by sulfur starvation. Knockout mutants retained higher root and leaf sulfate concentrations, indicating a role in regulation of stored sulfate pools.O.I.C.G.H.G.
27.399.7487.7At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.O.I.C.G.H.G.
27.399.763.6At5g35490833513unknown proteinEncodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.O.I.C.G.H.G.
27.199.7195.6At5g24660832538LSU2 (RESPONSE TO LOW SULFUR 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
26.099.7315.9At2g23590816891MES8 (METHYL ESTERASE 8)Encodes a protein shown to have carboxylesterase activity in vitro. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
25.299.6295.0At1g64850842793calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.199.6144.2At2g15050815994LTPPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
25.099.695.9At4g17770827498ATTPS5Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
24.399.6152.4At5g37360833710unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.C.G.H.G.
23.799.657.7At5g50800835152nodulin MtN3 family proteinF:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOO.I.C.G.H.G.
23.099.674.9At1g034008387512-oxoglutarate-dependent dioxygenase, putativeA single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC oxidase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers.O.I.C.G.H.G.
22.899.615.9At2g32290817789BAM6 (BETA-AMYLASE 6)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBOO.I.C.G.H.G.
22.299.636.1At5g59670836088leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
21.899.614.7At4g11840826790PLDGAMMA3member of C2-PLD subfamilyO.I.C.G.H.G.
21.499.6111.5At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
21.099.6453.7At2g14560815943LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.O.I.C.G.H.G.
20.399.627.4At1g11410837683S-locus protein kinase, putativeF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
20.299.645.1At4g04540825785protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
19.699.6116.6At1g17490838322unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.599.639.6At4g23990828499ATCSLG3encodes a protein similar to cellulose synthaseO.I.C.G.H.G.
18.699.549.8At3g09970820158calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMVAFO.I.C.G.H.G.
18.499.5811.0At3g22231821788PCC1 (PATHOGEN AND CIRCADIAN CONTROLLED 1)Encodes a member of a novel 6 member Arabidopsis gene family. Expression of PCC1 is regulated by the circadian clock and is upregulated in response to both virulent and avirulent strains of Pseudomonas syringae pv. tomato.O.I.C.G.H.G.
18.199.5404.7At5g03350831863legume lectin family proteinF:carbohydrate binding, sugar binding;P:biological_process unknown;C:apoplast, cell wall, chloroplast;PBOO.I.C.G.H.G.
17.899.5126.7At1g70820843419phosphoglucomutase, putative / glucose phosphomutase, putativeF:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPFO.I.C.G.H.G.
17.799.555.1At1g66390842957MYB90 (MYB DOMAIN PROTEIN 90)production of anthocyanin pigment 2 protein (PAP2)O.I.C.G.H.G.
17.199.538.0At1g11330837675S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
17.099.522.1At5g39020833894protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
17.099.514.4At4g23320828431protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
16.999.530.9At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
16.499.562.3At1g64890842797integral membrane transporter family proteinF:transporter activity;P:transport;C:membrane;BOPMAFO.I.C.G.H.G.
16.099.5972.5At3g22240821794unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
15.699.516.8At4g23130828412CRK5 (CYSTEINE-RICH RLK5)Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
15.399.437.9At1g64810842789APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)chloroplast APO1O.I.C.G.H.G.
14.999.436.1At3g55760824742unknown proteinF:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFBO.I.C.G.H.G.
14.999.412.6At4g23310828430receptor-like protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
14.499.4491.5At5g25610832636RD22responsive to dehydration 22 (RD22) mediated by ABAO.I.C.G.H.G.
14.099.418.1At4g18250827551receptor serine/threonine kinase, putativeF:transmembrane receptor protein serine/threonine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
13.699.481.8At5g49760835039leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVAO.I.C.G.H.G.
13.599.424.5At4g139003770199-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
13.299.438.7At4g23150828414protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
12.999.359.4At1g62250842522unknown proteinF:unknown;P:unknown;C:chloroplast;PO.I.C.G.H.G.
12.799.316.5At4g36830829836GNS1/SUR4 membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOVO.I.C.G.H.G.
12.499.3413.5At3g15840820827PIFI (post-illumination chlorophyll fluorescence increase)Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport.O.I.C.G.H.G.
12.499.386.2At2g22540816787SVP (SHORT VEGETATIVE PHASE)Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.O.I.C.G.H.G.
12.399.350.9At1g28230839717PUP1 (PURINE PERMEASE 1)Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.O.I.C.G.H.G.
12.099.3195.8At5g65480836673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
11.999.3509.7At5g38980833890unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.799.31015.9At2g25510817089unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.799.3117.5At3g52180824383SEX4 (STARCH-EXCESS 4)Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast.O.I.C.G.H.G.
11.699.3163.6At4g23890828489unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMFO.I.C.G.H.G.
11.599.321.1At2g23200816852protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.499.391.5At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAO.I.C.G.H.G.
11.399.355.4At3g56140824780unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen, chloroplast;PBMOFVO.I.C.G.H.G.
11.199.217.5At3g25740822165MAP1B (METHIONINE AMINOPEPTIDASE 1C)Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B.O.I.C.G.H.G.
11.099.2152.3At4g14400827085ACD6 (ACCELERATED CELL DEATH 6)encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae.O.I.C.G.H.G.
10.899.2139.9At2g20920816626unknown proteinF:unknown;P:unknown;C:membrane;BPOO.I.C.G.H.G.
10.899.253.1At4g27300828838S-locus protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.799.2196.9At3g15580820798APG8H (AUTOPHAGY 8H)Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition.O.I.C.G.H.G.
10.799.289.3At1g51805841607leucine-rich repeat protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.799.247.7At1g02450837800NIMIN1 (NIM1-INTERACTING 1)NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.O.I.C.G.H.G.
10.699.261.6At3g45620823704transducin family protein / WD-40 repeat family proteinThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.C.G.H.G.
10.699.239.4At2g19130816430S-locus lectin protein kinase family proteinF:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.499.252.2At1g21270838723WAK2cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase.O.I.C.G.H.G.
10.399.266.5At1g20650838654ATP binding / protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
10.299.2111.1At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
10.299.28.7At1g80960844436F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.199.2300.1At1g67865843114unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.199.2101.2At1g72030843534GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:unknown;PBOO.I.C.G.H.G.
10.199.294.3At2g27290817272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOO.I.C.G.H.G.
9.999.1575.3At1g14870838052-F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PMFOO.I.C.G.H.G.
9.999.1179.0At1g67870843115glycine-rich proteinF:unknown;P:biological_process unknown;C:unknown;MOBPFAVO.I.C.G.H.G.
9.899.134.8At2g33530817918scpl46 (serine carboxypeptidase-like 46)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
9.899.123.6At2g44200819028unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAO.I.C.G.H.G.
9.799.1163.5At2g37710818348RLK (receptor lectin kinase)Induced in response to Salicylic acid.O.I.C.G.H.G.
9.699.1146.7At2g35810818154unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
9.599.132.4At4g16770827383iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:peroxisome;POBFMO.I.C.G.H.G.
9.399.194.3At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
9.199.147.2At4g13670827001PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)F:unfolded protein binding, heat shock protein binding;P:protein folding, metabolic process;C:plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope;BOMPFAVO.I.C.G.H.G.
9.199.123.2At3g57680824937peptidase S41 family proteinF:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPMO.I.C.G.H.G.
8.999.038.2At2g04066814942MATE efflux protein-relatedF:drug transporter activity, antiporter activity;P:multidrug transport;C:membrane;PBOFMO.I.C.G.H.G.
8.899.093.1At3g04550819611unknown proteinF:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMOO.I.C.G.H.G.



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