Microarray experiments to specifically-expressed genes

GSM ID GSM269497
Assay name mkk1/mkk2, 24h after BTH, rep-A
GSE experiment GSE10646: BTH treated mkk1, mkk2 and mkk1/2 knockout mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
61.999.8101.6At1g67980843126CCoAMTEncodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.O.I.C.G.H.G.
60.199.8114.7At1g35230840412AGP5 (ARABINOGALACTAN-PROTEIN 5)Encodes arabinogalactan-protein (AGP5).O.I.C.G.H.G.
50.199.810.6At5g52720835349metal ion bindingF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
45.299.849.6At3g25010822092AtRLP41 (Receptor Like Protein 41)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
37.999.813.5At3g24900822088AtRLP39 (Receptor Like Protein 39)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
37.599.737.0At1g65510842863unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
37.499.7120.7At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseO.I.C.G.H.G.
35.299.783.7At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
34.899.782.1At5g24160832482SQE6 (SQUALENE MONOXYGENASE 6)F:squalene monooxygenase activity, oxidoreductase activity, FAD binding;P:sterol biosynthetic process;C:endomembrane system, integral to membrane;OBFMPAO.I.C.G.H.G.
34.499.781.4At3g22160821780VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBVO.I.C.G.H.G.
30.599.7133.1At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
30.299.741.3At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
29.199.7211.5At3g60420825213-F:unknown;P:unknown;C:cellular_component unknown;OBFPMO.I.C.G.H.G.
29.199.7121.8At1g76960844031unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
28.899.7104.0At4g10500826642oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFMO.I.C.G.H.G.
28.399.766.6At4g16690827371MES16 (METHYL ESTERASE 16)Encodes a protein shown to have carboxylesterase activity, methyl IAA esterase activity, and methyl jasmonate esterase activity in vitro. This protein does not act on MeSA, MeGA4, or MEGA9 in vitro. Although MES16 is similar to MES17, a MeIAA hydrolase, two mes16 mutant lines (SALK_151578) and (SALK_139756) do not show altered sensitivity to MeIAA in root growth assays. MES16 transcripts appear to be more than 10-fold less abundant than those of MES17 in roots.O.I.C.G.H.G.
26.899.723.2At5g62770836398unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFO.I.C.G.H.G.
26.799.7179.7At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
26.099.7254.5At2g43570818959chitinase, putativeF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMVO.I.C.G.H.G.
25.599.7141.4At5g39520833948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
25.099.6125.7At1g72060843537serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
24.099.669.7At4g11890826796protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
22.699.6161.2At3g18250821353unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFOO.I.C.G.H.G.
22.099.645.1At3g52430824408PAD4 (PHYTOALEXIN DEFICIENT 4)Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling.O.I.C.G.H.G.
21.199.670.6At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
20.999.666.5At1g02450837800NIMIN1 (NIM1-INTERACTING 1)NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression.O.I.C.G.H.G.
20.599.653.4At3g14060820620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cell wall, cytoplasm;PO.I.C.G.H.G.
20.199.633.4At1g71140843454MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMAO.I.C.G.H.G.
20.099.644.9At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
19.799.621.7At3g26820822297esterase/lipase/thioesterase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:biological_process unknown;C:unknown;BPOMFO.I.C.G.H.G.
19.499.611.1At3g57950824964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
18.999.5116.5At3g45860823729receptor-like protein kinase, putativeF:kinase activity;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
18.499.569.6At2g31945817753unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.299.5155.6At3g60140825184DIN2 (DARK INDUCIBLE 2)Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
18.099.561.1At5g46050834646PTR3 (PEPTIDE TRANSPORTER 3)Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.O.I.C.G.H.G.
17.899.5131.5At5g52760835353heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
17.499.556.9At4g28390828955AAC3 (ADP/ATP CARRIER 3)Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli).O.I.C.G.H.G.
17.499.546.5At1g09500837475cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
17.399.544.5At2g24240816958potassium channel tetramerisation domain-containing proteinF:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPOFO.I.C.G.H.G.
16.899.536.0At4g23220828421kinaseF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
16.899.531.3At2g45570819165CYP76C2member of CYP76CO.I.C.G.H.G.
16.899.514.7At3g08870820035lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
16.099.513.1At4g23310828430receptor-like protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
15.699.561.0At3g13950820608unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
15.199.451.6At4g08470826406MAPKKK10member of MEKK subfamilyO.I.C.G.H.G.
14.999.483.0At1g57630842139disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
14.999.478.7At1g80160844356lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:unknown;BPOO.I.C.G.H.G.
14.999.441.0At2g44240819032unknown proteinF:unknown;P:response to oxidative stress;C:endomembrane system;PFBO.I.C.G.H.G.
14.799.431.2At1g78410844177VQ motif-containing proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
14.299.425.1At4g139003770199-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
14.199.4182.0At5g24530832524DMR6 (DOWNY MILDEW RESISTANT 6)Encodes a putative 2OG-Fe(II) oxygenase that is defense-associated but required for susceptibility to downy mildew.O.I.C.G.H.G.
14.199.426.2At3g10450820209SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
13.999.498.5At3g51660824329macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOBO.I.C.G.H.G.
13.999.469.3At3g60690825240auxin-responsive family proteinF:unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
13.899.449.5At2g32680817828AtRLP23 (Receptor Like Protein 23)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
13.699.4151.9At1g03850839392glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:response to cytokinin stimulus;C:unknown;PFBO.I.C.G.H.G.
13.699.447.8At5g13080831147WRKY75WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation.O.I.C.G.H.G.
13.599.452.2At3g60540825225sec61beta family proteinF:protein transporter activity;P:protein transport;C:unknown;MFPOO.I.C.G.H.G.
13.599.436.6At2g47130819326short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
13.499.4301.6At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseO.I.C.G.H.G.
13.499.423.5At3g26220822223CYP71B3cytochrome P450 monooxygenaseO.I.C.G.H.G.
13.399.418.8At2g47190819332MYB2 (MYB DOMAIN PROTEIN 2)Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.O.I.C.G.H.G.
13.299.4111.4At5g27350832794SFP1Encodes a sugar-porter family protein that is induced during leaf senescence. The increase in its gene expression during leaf senescence is paralleled by an accumulation of monosaccharides.O.I.C.G.H.G.
13.299.420.8At3g26230822224CYP71B24putative cytochrome P450O.I.C.G.H.G.
12.899.360.6At5g39670833963calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
12.699.3215.9At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOO.I.C.G.H.G.
12.499.3171.8At2g18690816384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
12.499.327.4At3g51440824307strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFAO.I.C.G.H.G.
12.399.341.7At1g34750840379protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
12.299.327.2At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseO.I.C.G.H.G.
12.199.370.8At2g23320816864WRKY15Encodes WRKY DNA-binding protein 15 (WRKY15).O.I.C.G.H.G.
12.199.317.2At5g52740835351heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PO.I.C.G.H.G.
11.999.3156.4At2g37970818374SOUL-1F:binding;P:red or far red light signaling pathway, N-terminal protein myristoylation;C:plasma membrane, vacuole;OBPMAO.I.C.G.H.G.
11.999.317.6At1g67520843073lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.899.3130.5At2g39210818506nodulin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFMAO.I.C.G.H.G.
11.899.322.7At4g04490825779protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.699.3189.5At5g48180834871NSP5 (NITRILE SPECIFIER PROTEIN 5)Encodes a nitrile-specifier protein NSP5. NSP5 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.O.I.C.G.H.G.
11.699.345.3At5g39610833957ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.O.I.C.G.H.G.
11.699.328.1At1g23840838995unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
11.599.377.7At5g52750835352heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMO.I.C.G.H.G.
11.599.336.0At1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
11.599.320.6At1g33030840198O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
11.499.396.6At2g30550817604lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMVO.I.C.G.H.G.
11.499.316.9At5g24540832525BGLU31 (BETA GLUCOSIDASE 31)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFAO.I.C.G.H.G.
11.299.262.2At5g45800834620MEE62 (maternal effect embryo arrest 62)F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:embryonic development ending in seed dormancy, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;PMOBFVAO.I.C.G.H.G.
11.199.275.3At4g23570828457SGT1AClosely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance.O.I.C.G.H.G.
11.199.230.1At4g23260828425ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.099.2126.6At3g18830821416ATPLT5 (POLYOL TRANSPORTER 5)This gene encodes a plasma membrane-localized polyol/cyclitol/monosaccharide-H+-symporter. The AtPLT5 symporter is able to catalyze the energy-dependent membrane passage of a wide range of linear polyols (three to six carbon backbone), of cyclic polyols (myo-inositol), and of numerous monosaccharides, including pyranose ring-forming and furanose ring-forming hexoses and pentoses. This gene belongs to a monosaccharide transporter-like (MST-like) superfamily.O.I.C.G.H.G.
11.099.23.4At4g05030825845heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:mitochondrion;PO.I.C.G.H.G.
10.999.236.5At4g16860827395RPP4 (recognition of peronospora parasitica 4)Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.O.I.C.G.H.G.
10.699.2150.3At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.O.I.C.G.H.G.
10.699.226.0At1g71100843450RSW10 (RADIAL SWELLING 10)Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.O.I.C.G.H.G.
10.599.2111.8At5g04830830362unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBOO.I.C.G.H.G.
10.499.223.7At2g03530814882UPS2 (UREIDE PERMEASE 2)Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.O.I.C.G.H.G.
10.499.219.0At4g01010826427ATCNGC13member of Cyclic nucleotide gated channel familyO.I.C.G.H.G.
10.299.2167.5At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
10.299.261.5At1g19610838548PDF1.4Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
10.299.27.1At4g18980827634unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.999.1330.2At1g73260843660trypsin and protease inhibitor family protein / Kunitz family proteinF:endopeptidase inhibitor activity;P:response to salt stress;C:mitochondrion;POO.I.C.G.H.G.
9.799.1307.9At2g14560815943LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.O.I.C.G.H.G.



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