CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM268009

Assay name Col-0, Time 0, rep-B

GSE experiment GSE10646: BTH treated mkk1, mkk2 and mkk1/2 knockout mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
39.5 99.8 184.2 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
35.9 99.7 44.3 At5g36120 833608 CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOP O.I. C.G. H.G.
31.6 99.7 47.6 At4g09350 826517 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.
28.6 99.7 55.3 At1g13650 837926 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
28.2 99.7 41.8 At2g41870 818787 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
27.6 99.7 63.9 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
26.7 99.7 64.1 At3g26960 822314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
26.3 99.7 32.2 At1g69523 843286 UbiE/COQ5 methyltransferase family protein F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP O.I. C.G. H.G.
23.7 99.6 44.3 At5g62140 836334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
22.7 99.6 43.6 At5g50100 835074 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM O.I. C.G. H.G.
22.4 99.6 98.1 At3g44450 823570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.9 99.6 33.4 At5g22390 832300 unknown protein F:unknown;P:unknown;C:unknown;PMOF O.I. C.G. H.G.
19.5 99.6 141.4 At2g04039 814937 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;BOP O.I. C.G. H.G.
19.4 99.6 74.6 At4g12980 826910 auxin-responsive protein, putative F:unknown;P:multicellular organismal development;C:membrane;PMFOB O.I. C.G. H.G.
18.1 99.5 82.7 At2g37240 818301 - F:unknown;P:biological_process unknown;C:chloroplast;MPBOF O.I. C.G. H.G.
17.6 99.5 59.8 At5g40500 834048 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
17.5 99.5 171.1 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
17.1 99.5 19.4 At3g28130 822437 nodulin MtN21 family protein F:unknown;P:biological_process unknown;C:membrane;PBOMA O.I. C.G. H.G.
16.5 99.5 52.0 At1g22630 838869 unknown protein F:unknown;P:unknown;C:chloroplast;MPBO O.I. C.G. H.G.
16.2 99.5 33.1 At4g15510 827223 photosystem II reaction center PsbP family protein F:calcium ion binding;P:photosynthesis;C:in 9 components;PBO O.I. C.G. H.G.
16.0 99.5 29.7 At1g73870 843723 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
15.7 99.5 19.6 At1g49780 841401 PUB26 (PLANT U-BOX 26) F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBF O.I. C.G. H.G.
15.2 99.4 18.4 At4g38850 830040 SAUR15 (SMALL AUXIN UPREGULATED 15) mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants. O.I. C.G. H.G.
14.7 99.4 167.0 At5g57345 835840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
14.1 99.4 122.9 At4g36530 829805 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFAV O.I. C.G. H.G.
14.1 99.4 32.4 At5g20140 832136 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA O.I. C.G. H.G.
14.1 99.4 24.2 At5g63060 836426 transporter F:transporter activity;P:transport;C:chloroplast;MPFO O.I. C.G. H.G.
14.0 99.4 74.1 At2g01590 814688 CRR3 (CHLORORESPIRATORY REDUCTION 3) Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity. O.I. C.G. H.G.
13.7 99.4 78.3 At2g36145 818187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. C.G. H.G.
13.6 99.4 23.0 At3g44020 823519 thylakoid lumenal P17.1 protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO O.I. C.G. H.G.
13.4 99.4 25.0 At3g51750 824338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
13.1 99.4 19.6 At4g09900 826580 MES12 (METHYL ESTERASE 12) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
13.0 99.4 45.7 At1g49975 841421 unknown protein F:unknown;P:unknown;C:chloroplast;P O.I. C.G. H.G.
12.5 99.3 176.6 At3g54900 824655 CXIP1 (CAX INTERACTING PROTEIN 1) A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses. O.I. C.G. H.G.
12.4 99.3 21.3 At1g20816 838673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
12.2 99.3 213.6 At1g53670 841804 MSRB1 (methionine sulfoxide reductase B 1) F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV O.I. C.G. H.G.
12.1 99.3 71.0 At4g24930 828595 thylakoid lumenal 17.9 kDa protein, chloroplast F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;P O.I. C.G. H.G.
12.1 99.3 22.0 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
12.1 99.3 11.4 At4g16880 827396 disease resistance protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM O.I. C.G. H.G.
12.0 99.3 43.8 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
11.9 99.3 281.4 At5g08050 830699 - F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO O.I. C.G. H.G.
11.9 99.3 202.7 At2g40880 818685 ATCYSA (CYSTATIN A) Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress). O.I. C.G. H.G.
11.7 99.3 154.7 At1g14150 837974 oxygen evolving enhancer 3 (PsbQ) family protein F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P O.I. C.G. H.G.
11.6 99.3 13.4 At5g67390 836875 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.1 99.2 393.1 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
11.1 99.2 27.3 At1g51100 841533 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;P O.I. C.G. H.G.
11.0 99.2 153.0 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
11.0 99.2 133.7 At1g70760 843413 CRR23 ((chlororespiratory reduction 23) a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity. O.I. C.G. H.G.
11.0 99.2 62.1 At3g27050 822323 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
10.9 99.2 81.9 At3g10060 820167 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA O.I. C.G. H.G.
10.7 99.2 215.4 At2g38140 818392 PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4) plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete O.I. C.G. H.G.
10.5 99.2 65.3 At5g42070 834212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. C.G. H.G.
10.5 99.2 46.9 At4g38860 830041 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
10.4 99.2 99.7 At5g37360 833710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
10.4 99.2 11.2 At5g09990 830860 PROPEP5 (Elicitor peptide 5 precursor) F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.3 99.2 47.2 At2g17972 816308 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
10.2 99.2 112.2 At2g34460 818009 flavin reductase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFA O.I. C.G. H.G.
10.1 99.2 100.2 At1g64770 842785 NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1) encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. O.I. C.G. H.G.
10.0 99.2 22.6 At2g15020 815991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.0 99.2 15.6 At1g29450 839821 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
9.9 99.1 30.4 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
9.8 99.1 150.1 At3g44990 823634 XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8) xyloglucan endo-transglycosylase O.I. C.G. H.G.
9.8 99.1 67.2 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
9.8 99.1 16.0 At1g70985 843437 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMBFOVA O.I. C.G. H.G.
9.7 99.1 147.8 At5g07020 830593 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO O.I. C.G. H.G.
9.7 99.1 64.1 At5g64770 836598 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
9.6 99.1 66.1 At4g39970 830158 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV O.I. C.G. H.G.
9.6 99.1 40.6 At2g32500 817811 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
9.6 99.1 25.0 At1g55370 841984 carbohydrate binding / catalytic F:carbohydrate binding, catalytic activity;P:unknown;C:unknown;P O.I. C.G. H.G.
9.5 99.1 134.7 At5g57040 835808 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:chloroplast;BPOM O.I. C.G. H.G.
9.5 99.1 91.3 At2g27290 817272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPO O.I. C.G. H.G.
9.4 99.1 132.0 At2g05310 815079 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.4 99.1 121.1 At1g44000 841000 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
9.4 99.1 53.0 At1g04640 839462 LIP2 (LIPOYLTRANSFERASE 2) Lipoyltransferase, located in mitochondria but not found in chloroplasts O.I. C.G. H.G.
9.3 99.1 180.2 At4g02530 827927 chloroplast thylakoid lumen protein F:molecular_function unknown;P:biological_process unknown;C:in 6 components;P O.I. C.G. H.G.
9.3 99.1 52.2 At4g13220 826938 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
9.3 99.1 48.7 At5g58770 835991 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP O.I. C.G. H.G.
9.3 99.1 16.7 At3g25570 822144 adenosylmethionine decarboxylase family protein F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
9.2 99.1 139.8 At5g18600 831978 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
9.2 99.1 17.3 At2g04790 815022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
9.1 99.1 34.4 At3g11090 820280 LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21) F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.1 99.1 21.4 At3g12685 820449 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
9.0 99.1 42.0 At1g73530 843687 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBA O.I. C.G. H.G.
9.0 99.1 13.2 At4g13800 827014 permease-related F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB O.I. C.G. H.G.
8.9 99.0 92.4 At2g46100 819218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
8.9 99.0 38.7 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.
8.8 99.0 120.6 At1g18060 838386 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
8.8 99.0 90.5 At3g61220 825294 short-chain dehydrogenase/reductase (SDR) family protein F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA O.I. C.G. H.G.
8.8 99.0 48.6 At4g34090 829555 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO O.I. C.G. H.G.
8.8 99.0 29.1 At4g31310 829258 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;OPFBA O.I. C.G. H.G.
8.8 99.0 28.5 At3g20680 821615 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
8.6 99.0 69.1 At1g60550 842350 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
39.5	99.8	184.2	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
35.9	99.7	44.3	At5g36120	833608	CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)	F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOP	O.I.	C.G.	H.G.
31.6	99.7	47.6	At4g09350	826517	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
28.6	99.7	55.3	At1g13650	837926	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
28.2	99.7	41.8	At2g41870	818787	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
27.6	99.7	63.9	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
26.7	99.7	64.1	At3g26960	822314	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
26.3	99.7	32.2	At1g69523	843286	UbiE/COQ5 methyltransferase family protein	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMP	O.I.	C.G.	H.G.
23.7	99.6	44.3	At5g62140	836334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
22.7	99.6	43.6	At5g50100	835074	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM	O.I.	C.G.	H.G.
22.4	99.6	98.1	At3g44450	823570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.9	99.6	33.4	At5g22390	832300	unknown protein	F:unknown;P:unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
19.5	99.6	141.4	At2g04039	814937	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
19.4	99.6	74.6	At4g12980	826910	auxin-responsive protein, putative	F:unknown;P:multicellular organismal development;C:membrane;PMFOB	O.I.	C.G.	H.G.
18.1	99.5	82.7	At2g37240	818301	-	F:unknown;P:biological_process unknown;C:chloroplast;MPBOF	O.I.	C.G.	H.G.
17.6	99.5	59.8	At5g40500	834048	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
17.5	99.5	171.1	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
17.1	99.5	19.4	At3g28130	822437	nodulin MtN21 family protein	F:unknown;P:biological_process unknown;C:membrane;PBOMA	O.I.	C.G.	H.G.
16.5	99.5	52.0	At1g22630	838869	unknown protein	F:unknown;P:unknown;C:chloroplast;MPBO	O.I.	C.G.	H.G.
16.2	99.5	33.1	At4g15510	827223	photosystem II reaction center PsbP family protein	F:calcium ion binding;P:photosynthesis;C:in 9 components;PBO	O.I.	C.G.	H.G.
16.0	99.5	29.7	At1g73870	843723	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
15.7	99.5	19.6	At1g49780	841401	PUB26 (PLANT U-BOX 26)	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBF	O.I.	C.G.	H.G.
15.2	99.4	18.4	At4g38850	830040	SAUR15 (SMALL AUXIN UPREGULATED 15)	mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.	O.I.	C.G.	H.G.
14.7	99.4	167.0	At5g57345	835840	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
14.1	99.4	122.9	At4g36530	829805	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
14.1	99.4	32.4	At5g20140	832136	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA	O.I.	C.G.	H.G.
14.1	99.4	24.2	At5g63060	836426	transporter	F:transporter activity;P:transport;C:chloroplast;MPFO	O.I.	C.G.	H.G.
14.0	99.4	74.1	At2g01590	814688	CRR3 (CHLORORESPIRATORY REDUCTION 3)	Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.	O.I.	C.G.	H.G.
13.7	99.4	78.3	At2g36145	818187	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	C.G.	H.G.
13.6	99.4	23.0	At3g44020	823519	thylakoid lumenal P17.1 protein	F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO	O.I.	C.G.	H.G.
13.4	99.4	25.0	At3g51750	824338	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.1	99.4	19.6	At4g09900	826580	MES12 (METHYL ESTERASE 12)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
13.0	99.4	45.7	At1g49975	841421	unknown protein	F:unknown;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.5	99.3	176.6	At3g54900	824655	CXIP1 (CAX INTERACTING PROTEIN 1)	A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses.	O.I.	C.G.	H.G.
12.4	99.3	21.3	At1g20816	838673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
12.2	99.3	213.6	At1g53670	841804	MSRB1 (methionine sulfoxide reductase B 1)	F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAV	O.I.	C.G.	H.G.
12.1	99.3	71.0	At4g24930	828595	thylakoid lumenal 17.9 kDa protein, chloroplast	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;P	O.I.	C.G.	H.G.
12.1	99.3	22.0	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
12.1	99.3	11.4	At4g16880	827396	disease resistance protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
12.0	99.3	43.8	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
11.9	99.3	281.4	At5g08050	830699	-	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO	O.I.	C.G.	H.G.
11.9	99.3	202.7	At2g40880	818685	ATCYSA (CYSTATIN A)	Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).	O.I.	C.G.	H.G.
11.7	99.3	154.7	At1g14150	837974	oxygen evolving enhancer 3 (PsbQ) family protein	F:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;P	O.I.	C.G.	H.G.
11.6	99.3	13.4	At5g67390	836875	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.1	99.2	393.1	At2g42540	818854	COR15A (COLD-REGULATED 15A)	A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.	O.I.	C.G.	H.G.
11.1	99.2	27.3	At1g51100	841533	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;P	O.I.	C.G.	H.G.
11.0	99.2	153.0	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
11.0	99.2	133.7	At1g70760	843413	CRR23 ((chlororespiratory reduction 23)	a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.	O.I.	C.G.	H.G.
11.0	99.2	62.1	At3g27050	822323	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
10.9	99.2	81.9	At3g10060	820167	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA	O.I.	C.G.	H.G.
10.7	99.2	215.4	At2g38140	818392	PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)	plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete	O.I.	C.G.	H.G.
10.5	99.2	65.3	At5g42070	834212	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	C.G.	H.G.
10.5	99.2	46.9	At4g38860	830041	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
10.4	99.2	99.7	At5g37360	833710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
10.4	99.2	11.2	At5g09990	830860	PROPEP5 (Elicitor peptide 5 precursor)	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.3	99.2	47.2	At2g17972	816308	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
10.2	99.2	112.2	At2g34460	818009	flavin reductase-related	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFA	O.I.	C.G.	H.G.
10.1	99.2	100.2	At1g64770	842785	NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.	O.I.	C.G.	H.G.
10.0	99.2	22.6	At2g15020	815991	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.0	99.2	15.6	At1g29450	839821	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
9.9	99.1	30.4	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
9.8	99.1	150.1	At3g44990	823634	XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)	xyloglucan endo-transglycosylase	O.I.	C.G.	H.G.
9.8	99.1	67.2	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
9.8	99.1	16.0	At1g70985	843437	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMBFOVA	O.I.	C.G.	H.G.
9.7	99.1	147.8	At5g07020	830593	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO	O.I.	C.G.	H.G.
9.7	99.1	64.1	At5g64770	836598	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.6	99.1	66.1	At4g39970	830158	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV	O.I.	C.G.	H.G.
9.6	99.1	40.6	At2g32500	817811	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
9.6	99.1	25.0	At1g55370	841984	carbohydrate binding / catalytic	F:carbohydrate binding, catalytic activity;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
9.5	99.1	134.7	At5g57040	835808	lactoylglutathione lyase family protein / glyoxalase I family protein	F:catalytic activity;P:metabolic process;C:chloroplast;BPOM	O.I.	C.G.	H.G.
9.5	99.1	91.3	At2g27290	817272	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPO	O.I.	C.G.	H.G.
9.4	99.1	132.0	At2g05310	815079	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.4	99.1	121.1	At1g44000	841000	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
9.4	99.1	53.0	At1g04640	839462	LIP2 (LIPOYLTRANSFERASE 2)	Lipoyltransferase, located in mitochondria but not found in chloroplasts	O.I.	C.G.	H.G.
9.3	99.1	180.2	At4g02530	827927	chloroplast thylakoid lumen protein	F:molecular_function unknown;P:biological_process unknown;C:in 6 components;P	O.I.	C.G.	H.G.
9.3	99.1	52.2	At4g13220	826938	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
9.3	99.1	48.7	At5g58770	835991	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP	O.I.	C.G.	H.G.
9.3	99.1	16.7	At3g25570	822144	adenosylmethionine decarboxylase family protein	F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
9.2	99.1	139.8	At5g18600	831978	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
9.2	99.1	17.3	At2g04790	815022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
9.1	99.1	34.4	At3g11090	820280	LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.1	99.1	21.4	At3g12685	820449	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
9.0	99.1	42.0	At1g73530	843687	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBA	O.I.	C.G.	H.G.
9.0	99.1	13.2	At4g13800	827014	permease-related	F:unknown;P:biological_process unknown;C:plasma membrane;MFPOB	O.I.	C.G.	H.G.
8.9	99.0	92.4	At2g46100	819218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
8.9	99.0	38.7	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.
8.8	99.0	120.6	At1g18060	838386	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
8.8	99.0	90.5	At3g61220	825294	short-chain dehydrogenase/reductase (SDR) family protein	F:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPA	O.I.	C.G.	H.G.
8.8	99.0	48.6	At4g34090	829555	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO	O.I.	C.G.	H.G.
8.8	99.0	29.1	At4g31310	829258	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;OPFBA	O.I.	C.G.	H.G.
8.8	99.0	28.5	At3g20680	821615	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
8.6	99.0	69.1	At1g60550	842350	ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)	F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.

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GSM ID	GSM268009
Assay name	Col-0, Time 0, rep-B
GSE experiment	GSE10646: BTH treated mkk1, mkk2 and mkk1/2 knockout mutant

Microarray experiments to specifically-expressed genes

GSM ID GSM268009 Assay name Col-0, Time 0, rep-B GSE experiment GSE10646: BTH treated mkk1, mkk2 and mkk1/2 knockout mutant

GSM ID GSM268009

Assay name Col-0, Time 0, rep-B

GSE experiment GSE10646: BTH treated mkk1, mkk2 and mkk1/2 knockout mutant