Microarray experiments to specifically-expressed genes

GSM ID GSM268009
Assay name Col-0, Time 0, rep-B
GSE experiment GSE10646: BTH treated mkk1, mkk2 and mkk1/2 knockout mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
39.599.8184.2At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
35.999.744.3At5g36120833608CCB3 (COFACTOR ASSEMBLY, COMPLEX C (B6F),)F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast thylakoid membrane, chloroplast;BOPO.I.C.G.H.G.
31.699.747.6At4g09350826517DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAVO.I.C.G.H.G.
28.699.755.3At1g13650837926-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
28.299.741.8At2g41870818787remorin family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
27.699.763.9At5g35490833513unknown proteinEncodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.O.I.C.G.H.G.
26.799.764.1At3g26960822314unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.399.732.2At1g69523843286UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:metabolic process;C:chloroplast;BOFAMPO.I.C.G.H.G.
23.799.644.3At5g62140836334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
22.799.643.6At5g50100835074-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPMO.I.C.G.H.G.
22.499.698.1At3g44450823570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.999.633.4At5g22390832300unknown proteinF:unknown;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
19.599.6141.4At2g04039814937unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;BOPO.I.C.G.H.G.
19.499.674.6At4g12980826910auxin-responsive protein, putativeF:unknown;P:multicellular organismal development;C:membrane;PMFOBO.I.C.G.H.G.
18.199.582.7At2g37240818301-F:unknown;P:biological_process unknown;C:chloroplast;MPBOFO.I.C.G.H.G.
17.699.559.8At5g40500834048unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
17.599.5171.1At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.199.519.4At3g28130822437nodulin MtN21 family proteinF:unknown;P:biological_process unknown;C:membrane;PBOMAO.I.C.G.H.G.
16.599.552.0At1g22630838869unknown proteinF:unknown;P:unknown;C:chloroplast;MPBOO.I.C.G.H.G.
16.299.533.1At4g15510827223photosystem II reaction center PsbP family proteinF:calcium ion binding;P:photosynthesis;C:in 9 components;PBOO.I.C.G.H.G.
16.099.529.7At1g73870843723zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
15.799.519.6At1g49780841401PUB26 (PLANT U-BOX 26)F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFO.I.C.G.H.G.
15.299.418.4At4g38850830040SAUR15 (SMALL AUXIN UPREGULATED 15)mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.O.I.C.G.H.G.
14.799.4167.0At5g57345835840unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
14.199.4122.9At4g36530829805hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAVO.I.C.G.H.G.
14.199.432.4At5g20140832136SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMAO.I.C.G.H.G.
14.199.424.2At5g63060836426transporterF:transporter activity;P:transport;C:chloroplast;MPFOO.I.C.G.H.G.
14.099.474.1At2g01590814688CRR3 (CHLORORESPIRATORY REDUCTION 3)Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.O.I.C.G.H.G.
13.799.478.3At2g36145818187unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.C.G.H.G.
13.699.423.0At3g44020823519thylakoid lumenal P17.1 proteinF:unknown;P:unknown;C:chloroplast thylakoid lumen;POO.I.C.G.H.G.
13.499.425.0At3g51750824338unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.199.419.6At4g09900826580MES12 (METHYL ESTERASE 12)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
13.099.445.7At1g49975841421unknown proteinF:unknown;P:unknown;C:chloroplast;PO.I.C.G.H.G.
12.599.3176.6At3g54900824655CXIP1 (CAX INTERACTING PROTEIN 1)A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses.O.I.C.G.H.G.
12.499.321.3At1g20816838673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
12.299.3213.6At1g53670841804MSRB1 (methionine sulfoxide reductase B 1)F:peptide-methionine-(S)-S-oxide reductase activity;P:response to oxidative stress, N-terminal protein myristoylation;C:chloroplast stroma, chloroplast;OBMPFAVO.I.C.G.H.G.
12.199.371.0At4g24930828595thylakoid lumenal 17.9 kDa protein, chloroplastF:molecular_function unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast;PO.I.C.G.H.G.
12.199.322.0At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
12.199.311.4At4g16880827396disease resistance protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMO.I.C.G.H.G.
12.099.343.8At4g31870829316ATGPX7 (glutathione peroxidase 7)Encodes glutathione peroxidase.O.I.C.G.H.G.
11.999.3281.4At5g08050830699-F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;POO.I.C.G.H.G.
11.999.3202.7At2g40880818685ATCYSA (CYSTATIN A)Encodes a protein with cysteine proteinase inhibitor activity. Overexpression increases tolerance to abiotic stressors (i.e.salt,osmitic, cold stress).O.I.C.G.H.G.
11.799.3154.7At1g14150837974oxygen evolving enhancer 3 (PsbQ) family proteinF:calcium ion binding;P:photosynthesis;C:chloroplast thylakoid membrane, chloroplast photosystem II, chloroplast thylakoid lumen, chloroplast;PO.I.C.G.H.G.
11.699.313.4At5g67390836875unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
11.199.2393.1At2g42540818854COR15A (COLD-REGULATED 15A)A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope.O.I.C.G.H.G.
11.199.227.3At1g51100841533unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PO.I.C.G.H.G.
11.099.2153.0At5g51720835246unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPOO.I.C.G.H.G.
11.099.2133.7At1g70760843413CRR23 ((chlororespiratory reduction 23)a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.O.I.C.G.H.G.
11.099.262.1At3g27050822323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.999.281.9At3g10060820167immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFAO.I.C.G.H.G.
10.799.2215.4At2g38140818392PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)plastid-specific ribosomal protein 4 (PSRP4) mRNA, completeO.I.C.G.H.G.
10.599.265.3At5g42070834212unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;POO.I.C.G.H.G.
10.599.246.9At4g38860830041auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
10.499.299.7At5g37360833710unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.C.G.H.G.
10.499.211.2At5g09990830860PROPEP5 (Elicitor peptide 5 precursor)F:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.399.247.2At2g17972816308unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO.I.C.G.H.G.
10.299.2112.2At2g34460818009flavin reductase-relatedF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFAO.I.C.G.H.G.
10.199.2100.2At1g64770842785NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.O.I.C.G.H.G.
10.099.222.6At2g15020815991unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.099.215.6At1g29450839821auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
9.999.130.4At1g76570843990chlorophyll A-B binding family proteinF:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POMO.I.C.G.H.G.
9.899.1150.1At3g44990823634XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)xyloglucan endo-transglycosylaseO.I.C.G.H.G.
9.899.167.2At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.O.I.C.G.H.G.
9.899.116.0At1g70985843437hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMBFOVAO.I.C.G.H.G.
9.799.1147.8At5g07020830593proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVOO.I.C.G.H.G.
9.799.164.1At5g64770836598unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
9.699.166.1At4g39970830158haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAVO.I.C.G.H.G.
9.699.140.6At2g32500817811-F:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
9.699.125.0At1g55370841984carbohydrate binding / catalyticF:carbohydrate binding, catalytic activity;P:unknown;C:unknown;PO.I.C.G.H.G.
9.599.1134.7At5g57040835808lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:chloroplast;BPOMO.I.C.G.H.G.
9.599.191.3At2g27290817272unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOO.I.C.G.H.G.
9.499.1132.0At2g05310815079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
9.499.1121.1At1g44000841000unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
9.499.153.0At1g04640839462LIP2 (LIPOYLTRANSFERASE 2)Lipoyltransferase, located in mitochondria but not found in chloroplastsO.I.C.G.H.G.
9.399.1180.2At4g02530827927chloroplast thylakoid lumen proteinF:molecular_function unknown;P:biological_process unknown;C:in 6 components;PO.I.C.G.H.G.
9.399.152.2At4g13220826938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
9.399.148.7At5g58770835991dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putativeF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMPO.I.C.G.H.G.
9.399.116.7At3g25570822144adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
9.299.1139.8At5g18600831978glutaredoxin family proteinF:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
9.299.117.3At2g04790815022unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
9.199.134.4At3g11090820280LBD21 (LOB DOMAIN-CONTAINING PROTEIN 21)F:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
9.199.121.4At3g12685820449-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
9.099.142.0At1g73530843687RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPFOBAO.I.C.G.H.G.
9.099.113.2At4g13800827014permease-relatedF:unknown;P:biological_process unknown;C:plasma membrane;MFPOBO.I.C.G.H.G.
8.999.092.4At2g46100819218unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
8.999.038.7At2g23840816916HNH endonuclease domain-containing proteinF:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPAO.I.C.G.H.G.
8.899.0120.6At1g18060838386unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
8.899.090.5At3g61220825294short-chain dehydrogenase/reductase (SDR) family proteinF:(-)-menthol dehydrogenase activity, oxidoreductase activity, (+)-neomenthol dehydrogenase activity;P:defense response;C:plasma membrane;BOMFPAO.I.C.G.H.G.
8.899.048.6At4g34090829555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;POO.I.C.G.H.G.
8.899.029.1At4g31310829258avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;OPFBAO.I.C.G.H.G.
8.899.028.5At3g20680821615unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
8.699.069.1At1g60550842350ECHID (ENOYL-COA HYDRATASE/ISOMERASE D)F:naphthoate synthase activity, catalytic activity;P:vitamin K biosynthetic process, metabolic process, menaquinone biosynthetic process;C:peroxisome;BOMFPAO.I.C.G.H.G.



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