CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM266677

Assay name Arabidopsis, root cells, stele, -Fe, replicate 3

GSE experiment GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
332.3 100.0 80.8 At1g79620 844301 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
299.8 100.0 106.6 At4g14940 827152 ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1) atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development. O.I. C.G. H.G.
172.3 100.0 122.8 At4g11210 826723 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
152.3 99.9 114.7 At3g45700 823712 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF O.I. C.G. H.G.
148.3 99.9 29.4 At1g73780 843713 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
141.7 99.9 112.1 At1g23760 838987 JP630 Encodes aromatic rich glycoprotein JP630. O.I. C.G. H.G.
140.2 99.9 66.6 At5g03960 830275 IQD12 (IQ-domain 12) F:calmodulin binding;P:biological_process unknown;C:unknown;PBFO O.I. C.G. H.G.
131.5 99.9 170.0 At2g28760 817426 NAD-dependent epimerase/dehydratase family protein F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:plasma membrane;OBPMAFV O.I. C.G. H.G.
130.8 99.9 40.3 At1g77020 844038 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
122.1 99.9 53.2 At3g02850 821052 SKOR member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. O.I. C.G. H.G.
110.0 99.9 77.0 At5g01360 830298 - F:unknown;P:unknown;C:unknown;PMF O.I. C.G. H.G.
109.4 99.9 70.6 At2g27740 817320 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAV O.I. C.G. H.G.
104.1 99.9 59.8 At2g18800 816395 XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21) F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO O.I. C.G. H.G.
101.3 99.9 25.4 At2g46760 819289 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMA O.I. C.G. H.G.
92.3 99.9 22.4 At5g57770 835885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
80.5 99.9 30.8 At5g23400 832405 disease resistance family protein / LRR family protein F:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAV O.I. C.G. H.G.
78.6 99.9 194.2 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein O.I. C.G. H.G.
77.3 99.9 23.7 At2g31900 817748 XIF Encodes an novel myosin isoform. O.I. C.G. H.G.
75.1 99.9 70.8 At5g43890 834411 YUCCA5 Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype O.I. C.G. H.G.
74.7 99.9 333.1 At1g20850 838677 XCP2 (xylem cysteine peptidase 2) F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF O.I. C.G. H.G.
73.0 99.9 84.4 At4g32880 829424 ATHB-8 (HOMEOBOX GENE 8) member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems. O.I. C.G. H.G.
72.6 99.9 83.5 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA O.I. C.G. H.G.
71.0 99.9 184.6 At1g32100 840102 PRR1 (PINORESINOL REDUCTASE 1) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol. O.I. C.G. H.G.
70.6 99.9 47.8 At1g67510 843072 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
70.4 99.9 236.5 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
68.5 99.9 44.5 At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
66.2 99.8 163.3 At3g25900 822186 HMT-1 F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
64.5 99.8 44.9 At2g04850 815031 auxin-responsive protein-related F:unknown;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
64.4 99.8 30.0 At2g30400 817591 OFP2 (OVATE FAMILY PROTEIN 2) F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB O.I. C.G. H.G.
61.8 99.8 188.6 At1g77690 844105 LAX3 (LIKE AUX1 3) Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia. O.I. C.G. H.G.
61.2 99.8 37.3 At2g38320 818412 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. C.G. H.G.
58.3 99.8 174.7 At2g13820 815865 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PF O.I. C.G. H.G.
56.1 99.8 92.8 At5g08370 830735 AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2) F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:positive regulation of flower development, leaf morphogenesis;C:plant-type cell wall;MBFOP O.I. C.G. H.G.
55.0 99.8 44.6 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
54.0 99.8 40.7 At1g18140 838393 LAC1 (Laccase 1) putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). O.I. C.G. H.G.
53.5 99.8 32.4 At5g38610 833851 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
53.2 99.8 17.2 At1g29200 839795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
52.0 99.8 147.2 At3g27200 822339 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF O.I. C.G. H.G.
51.1 99.8 85.5 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
50.4 99.8 29.0 At4g14380 827082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
50.3 99.8 86.0 At2g44300 819038 lipid transfer protein-related F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P O.I. C.G. H.G.
50.0 99.8 290.7 At4g23690 828469 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
50.0 99.8 69.3 At4g15290 827195 ATCSLB05 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
49.1 99.8 46.8 At1g10120 837549 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
48.8 99.8 22.7 At5g11540 831026 FAD-binding domain-containing protein F:D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system, membrane;BOFMPA O.I. C.G. H.G.
46.9 99.8 108.6 At3g27960 822420 kinesin light chain-related F:binding;P:biological_process unknown;C:plasma membrane;MBOFPAV O.I. C.G. H.G.
46.6 99.8 24.5 At5g02640 831166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.9 99.8 79.4 At3g22830 821854 AT-HSFA6B member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
43.2 99.8 15.1 At5g45970 834637 ARAC2 (ARABIDOPSIS RAC-LIKE 2) Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family. O.I. C.G. H.G.
42.6 99.8 98.9 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. O.I. C.G. H.G.
41.9 99.8 59.9 At5g40020 833999 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO O.I. C.G. H.G.
40.8 99.8 108.8 At3g12110 820385 ACT11 (actin-11) Encodes an actin that is expressed predominantly during reproductive development. O.I. C.G. H.G.
40.0 99.8 98.9 At5g01890 831677 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
39.5 99.8 80.3 At3g51030 824267 ATTRX1 encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. O.I. C.G. H.G.
39.3 99.8 60.5 At2g28410 817389 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
39.3 99.8 32.1 At3g52900 824456 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBAF O.I. C.G. H.G.
39.2 99.8 19.1 At4g36160 829773 ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. O.I. C.G. H.G.
38.3 99.8 11.8 At1g30080 839887 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
37.9 99.8 46.5 At2g38090 818387 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
37.5 99.7 139.4 At5g51890 835264 peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots O.I. C.G. H.G.
37.4 99.7 203.8 At5g15490 831402 UDP-glucose 6-dehydrogenase, putative F:in 7 functions;P:metabolic process;C:cytosol, cell wall, nucleus;OBAMPFV O.I. C.G. H.G.
37.4 99.7 33.2 At2g47500 819363 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFP O.I. C.G. H.G.
37.1 99.7 49.3 At3g26610 822270 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
35.9 99.7 80.3 At5g59490 836068 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
35.6 99.7 86.3 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
35.1 99.7 34.6 At5g26330 832702 plastocyanin-like domain-containing protein / mavicyanin, putative F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PF O.I. C.G. H.G.
35.0 99.7 39.9 At4g36710 829824 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO O.I. C.G. H.G.
35.0 99.7 30.6 At5g12870 831127 MYB46 (MYB DOMAIN PROTEIN 46) Member of the R2R3 factor gene family. O.I. C.G. H.G.
35.0 99.7 22.2 At5g40630 834062 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFV O.I. C.G. H.G.
34.7 99.7 17.7 At2g37440 818321 endonuclease/exonuclease/phosphatase family protein F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
34.2 99.7 156.0 At5g59290 836047 UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. O.I. C.G. H.G.
33.4 99.7 22.2 At3g42800 823322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP O.I. C.G. H.G.
33.3 99.7 12.3 At5g48740 834932 leucine-rich repeat family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
31.8 99.7 102.9 At2g18210 816336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
31.6 99.7 37.1 At1g32930 840187 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPO O.I. C.G. H.G.
31.3 99.7 25.9 At4g17220 827434 ATMAP70-5 (microtubule-associated proteins 70-5) Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues. O.I. C.G. H.G.
30.7 99.7 17.2 At2g31085 817664 CLE6 (CLAVATA3/ESR-RELATED 6) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo. O.I. C.G. H.G.
30.6 99.7 26.9 At3g62160 825389 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
30.5 99.7 73.1 At3g10080 820169 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOM O.I. C.G. H.G.
30.5 99.7 28.6 At1g75090 843846 methyladenine glycosylase family protein F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF O.I. C.G. H.G.
30.2 99.7 61.1 At4g37250 829879 leucine-rich repeat family protein / protein kinase family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
30.0 99.7 24.4 At1g69080 843240 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PM O.I. C.G. H.G.
29.7 99.7 124.8 At5g03170 831914 FLA11 F:unknown;P:unknown;C:anchored to membrane;PBOMAF O.I. C.G. H.G.
29.7 99.7 49.4 At1g68810 843213 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB O.I. C.G. H.G.
29.5 99.7 212.7 At5g49460 835006 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL) O.I. C.G. H.G.
28.9 99.7 115.5 At3g57010 824868 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA O.I. C.G. H.G.
28.5 99.7 60.6 At2g47270 819340 transcription factor/ transcription regulator F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
28.5 99.7 35.5 At3g18660 821397 PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch. O.I. C.G. H.G.
28.4 99.7 103.1 At1g28110 839704 SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR) F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB O.I. C.G. H.G.
28.4 99.7 11.9 At5g15900 831447 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
28.1 99.7 36.1 At5g46910 834736 transcription factor jumonji (jmj) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPO O.I. C.G. H.G.
27.9 99.7 15.6 At1g12260 837780 ANAC007 (ARABIDOPSIS NAC 007) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. O.I. C.G. H.G.
27.3 99.7 57.0 At3g53600 824528 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF O.I. C.G. H.G.
27.3 99.7 48.3 At4g16340 827328 SPK1 (SPIKE1) mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein O.I. C.G. H.G.
27.1 99.7 75.4 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. O.I. C.G. H.G.
27.0 99.7 13.5 At3g08490 819996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.9 99.7 109.4 At1g78100 844146 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.7 99.7 28.7 At1g80690 844408 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
26.5 99.7 142.6 At3g15540 820793 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) IAA induced protein 19 O.I. C.G. H.G.
26.5 99.7 14.4 At1g75590 843894 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
332.3	100.0	80.8	At1g79620	844301	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
299.8	100.0	106.6	At4g14940	827152	ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)	atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.	O.I.	C.G.	H.G.
172.3	100.0	122.8	At4g11210	826723	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
152.3	99.9	114.7	At3g45700	823712	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF	O.I.	C.G.	H.G.
148.3	99.9	29.4	At1g73780	843713	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
141.7	99.9	112.1	At1g23760	838987	JP630	Encodes aromatic rich glycoprotein JP630.	O.I.	C.G.	H.G.
140.2	99.9	66.6	At5g03960	830275	IQD12 (IQ-domain 12)	F:calmodulin binding;P:biological_process unknown;C:unknown;PBFO	O.I.	C.G.	H.G.
131.5	99.9	170.0	At2g28760	817426	NAD-dependent epimerase/dehydratase family protein	F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:plasma membrane;OBPMAFV	O.I.	C.G.	H.G.
130.8	99.9	40.3	At1g77020	844038	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
122.1	99.9	53.2	At3g02850	821052	SKOR	member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+.	O.I.	C.G.	H.G.
110.0	99.9	77.0	At5g01360	830298	-	F:unknown;P:unknown;C:unknown;PMF	O.I.	C.G.	H.G.
109.4	99.9	70.6	At2g27740	817320	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAV	O.I.	C.G.	H.G.
104.1	99.9	59.8	At2g18800	816395	XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)	F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBO	O.I.	C.G.	H.G.
101.3	99.9	25.4	At2g46760	819289	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMA	O.I.	C.G.	H.G.
92.3	99.9	22.4	At5g57770	835885	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
80.5	99.9	30.8	At5g23400	832405	disease resistance family protein / LRR family protein	F:protein binding;P:signal transduction, defense response;C:cell wall;PMOBFAV	O.I.	C.G.	H.G.
78.6	99.9	194.2	At4g35350	829688	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	tracheary element vacuolar protein	O.I.	C.G.	H.G.
77.3	99.9	23.7	At2g31900	817748	XIF	Encodes an novel myosin isoform.	O.I.	C.G.	H.G.
75.1	99.9	70.8	At5g43890	834411	YUCCA5	Encodes a YUCCA-like putative flavin monooxygenase, the activation tagging mutant has increased level of IAA, increased auxin response and phenotype of auxin overproduction, rescues erecta mutant phenotype	O.I.	C.G.	H.G.
74.7	99.9	333.1	At1g20850	838677	XCP2 (xylem cysteine peptidase 2)	F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF	O.I.	C.G.	H.G.
73.0	99.9	84.4	At4g32880	829424	ATHB-8 (HOMEOBOX GENE 8)	member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems.	O.I.	C.G.	H.G.
72.6	99.9	83.5	At3g47400	823894	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA	O.I.	C.G.	H.G.
71.0	99.9	184.6	At1g32100	840102	PRR1 (PINORESINOL REDUCTASE 1)	Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.	O.I.	C.G.	H.G.
70.6	99.9	47.8	At1g67510	843072	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
70.4	99.9	236.5	At4g26320	828738	AGP13 (arabinogalactan protein 13)	F:unknown;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
68.5	99.9	44.5	At3g59370	825106	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
66.2	99.8	163.3	At3g25900	822186	HMT-1	F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
64.5	99.8	44.9	At2g04850	815031	auxin-responsive protein-related	F:unknown;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
64.4	99.8	30.0	At2g30400	817591	OFP2 (OVATE FAMILY PROTEIN 2)	F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFB	O.I.	C.G.	H.G.
61.8	99.8	188.6	At1g77690	844105	LAX3 (LIKE AUX1 3)	Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.	O.I.	C.G.	H.G.
61.2	99.8	37.3	At2g38320	818412	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	C.G.	H.G.
58.3	99.8	174.7	At2g13820	815865	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to plasma membrane, plasma membrane;PF	O.I.	C.G.	H.G.
56.1	99.8	92.8	At5g08370	830735	AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)	F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:positive regulation of flower development, leaf morphogenesis;C:plant-type cell wall;MBFOP	O.I.	C.G.	H.G.
55.0	99.8	44.6	At1g47410	841146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
54.0	99.8	40.7	At1g18140	838393	LAC1 (Laccase 1)	putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).	O.I.	C.G.	H.G.
53.5	99.8	32.4	At5g38610	833851	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
53.2	99.8	17.2	At1g29200	839795	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
52.0	99.8	147.2	At3g27200	822339	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMF	O.I.	C.G.	H.G.
51.1	99.8	85.5	At4g09990	826590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
50.4	99.8	29.0	At4g14380	827082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
50.3	99.8	86.0	At2g44300	819038	lipid transfer protein-related	F:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
50.0	99.8	290.7	At4g23690	828469	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
50.0	99.8	69.3	At4g15290	827195	ATCSLB05	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
49.1	99.8	46.8	At1g10120	837549	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
48.8	99.8	22.7	At5g11540	831026	FAD-binding domain-containing protein	F:D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system, membrane;BOFMPA	O.I.	C.G.	H.G.
46.9	99.8	108.6	At3g27960	822420	kinesin light chain-related	F:binding;P:biological_process unknown;C:plasma membrane;MBOFPAV	O.I.	C.G.	H.G.
46.6	99.8	24.5	At5g02640	831166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.9	99.8	79.4	At3g22830	821854	AT-HSFA6B	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
43.2	99.8	15.1	At5g45970	834637	ARAC2 (ARABIDOPSIS RAC-LIKE 2)	Encodes a Rac-like protein ARAC2. A member of ROP GTPase gene family.	O.I.	C.G.	H.G.
42.6	99.8	98.9	At4g18780	827612	IRX1 (IRREGULAR XYLEM 1)	Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	O.I.	C.G.	H.G.
41.9	99.8	59.9	At5g40020	833999	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO	O.I.	C.G.	H.G.
40.8	99.8	108.8	At3g12110	820385	ACT11 (actin-11)	Encodes an actin that is expressed predominantly during reproductive development.	O.I.	C.G.	H.G.
40.0	99.8	98.9	At5g01890	831677	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
39.5	99.8	80.3	At3g51030	824267	ATTRX1	encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.	O.I.	C.G.	H.G.
39.3	99.8	60.5	At2g28410	817389	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
39.3	99.8	32.1	At3g52900	824456	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBAF	O.I.	C.G.	H.G.
39.2	99.8	19.1	At4g36160	829773	ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76)	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	O.I.	C.G.	H.G.
38.3	99.8	11.8	At1g30080	839887	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
37.9	99.8	46.5	At2g38090	818387	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
37.5	99.7	139.4	At5g51890	835264	peroxidase	encodes peroxidase involved in the lignification of tracheary elements (TE) in roots	O.I.	C.G.	H.G.
37.4	99.7	203.8	At5g15490	831402	UDP-glucose 6-dehydrogenase, putative	F:in 7 functions;P:metabolic process;C:cytosol, cell wall, nucleus;OBAMPFV	O.I.	C.G.	H.G.
37.4	99.7	33.2	At2g47500	819363	ATP binding / microtubule motor	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFP	O.I.	C.G.	H.G.
37.1	99.7	49.3	At3g26610	822270	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
35.9	99.7	80.3	At5g59490	836068	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
35.6	99.7	86.3	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
35.1	99.7	34.6	At5g26330	832702	plastocyanin-like domain-containing protein / mavicyanin, putative	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PF	O.I.	C.G.	H.G.
35.0	99.7	39.9	At4g36710	829824	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
35.0	99.7	30.6	At5g12870	831127	MYB46 (MYB DOMAIN PROTEIN 46)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
35.0	99.7	22.2	At5g40630	834062	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFV	O.I.	C.G.	H.G.
34.7	99.7	17.7	At2g37440	818321	endonuclease/exonuclease/phosphatase family protein	F:hydrolase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
34.2	99.7	156.0	At5g59290	836047	UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3)	Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.	O.I.	C.G.	H.G.
33.4	99.7	22.2	At3g42800	823322	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP	O.I.	C.G.	H.G.
33.3	99.7	12.3	At5g48740	834932	leucine-rich repeat family protein / protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
31.8	99.7	102.9	At2g18210	816336	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
31.6	99.7	37.1	At1g32930	840187	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPO	O.I.	C.G.	H.G.
31.3	99.7	25.9	At4g17220	827434	ATMAP70-5 (microtubule-associated proteins 70-5)	Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues.	O.I.	C.G.	H.G.
30.7	99.7	17.2	At2g31085	817664	CLE6 (CLAVATA3/ESR-RELATED 6)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.	O.I.	C.G.	H.G.
30.6	99.7	26.9	At3g62160	825389	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
30.5	99.7	73.1	At3g10080	820169	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOM	O.I.	C.G.	H.G.
30.5	99.7	28.6	At1g75090	843846	methyladenine glycosylase family protein	F:DNA-3-methyladenine glycosylase I activity, catalytic activity;P:DNA repair, base-excision repair;C:unknown;BOPAMF	O.I.	C.G.	H.G.
30.2	99.7	61.1	At4g37250	829879	leucine-rich repeat family protein / protein kinase family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
30.0	99.7	24.4	At1g69080	843240	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PM	O.I.	C.G.	H.G.
29.7	99.7	124.8	At5g03170	831914	FLA11	F:unknown;P:unknown;C:anchored to membrane;PBOMAF	O.I.	C.G.	H.G.
29.7	99.7	49.4	At1g68810	843213	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB	O.I.	C.G.	H.G.
29.5	99.7	212.7	At5g49460	835006	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	One of the two genes encoding subunit B of the cytosolic enzyme ATP Citrate Lyase (ACL)	O.I.	C.G.	H.G.
28.9	99.7	115.5	At3g57010	824868	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;PMBOA	O.I.	C.G.	H.G.
28.5	99.7	60.6	At2g47270	819340	transcription factor/ transcription regulator	F:transcription factor activity, transcription regulator activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
28.5	99.7	35.5	At3g18660	821397	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1)	Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.	O.I.	C.G.	H.G.
28.4	99.7	103.1	At1g28110	839704	SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
28.4	99.7	11.9	At5g15900	831447	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
28.1	99.7	36.1	At5g46910	834736	transcription factor jumonji (jmj) family protein	F:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPO	O.I.	C.G.	H.G.
27.9	99.7	15.6	At1g12260	837780	ANAC007 (ARABIDOPSIS NAC 007)	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	O.I.	C.G.	H.G.
27.3	99.7	57.0	At3g53600	824528	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF	O.I.	C.G.	H.G.
27.3	99.7	48.3	At4g16340	827328	SPK1 (SPIKE1)	mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein	O.I.	C.G.	H.G.
27.1	99.7	75.4	At3g50660	824229	DWF4 (DWARF 4)	Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.	O.I.	C.G.	H.G.
27.0	99.7	13.5	At3g08490	819996	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.9	99.7	109.4	At1g78100	844146	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.7	99.7	28.7	At1g80690	844408	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
26.5	99.7	142.6	At3g15540	820793	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	IAA induced protein 19	O.I.	C.G.	H.G.
26.5	99.7	14.4	At1g75590	843894	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.

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GSM ID	GSM266677
Assay name	Arabidopsis, root cells, stele, -Fe, replicate 3
GSE experiment	GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment

Microarray experiments to specifically-expressed genes

GSM ID GSM266677 Assay name Arabidopsis, root cells, stele, -Fe, replicate 3 GSE experiment GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment

GSM ID GSM266677

Assay name Arabidopsis, root cells, stele, -Fe, replicate 3

GSE experiment GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment