CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM266670

Assay name Arabidopsis, root cells, cortex, -Fe, replicate 2

GSE experiment GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
220.9 100.0 151.0 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
219.9 100.0 111.1 At1g05650 837072 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
201.3 100.0 114.0 At2g39040 818490 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
151.4 99.9 30.8 At3g19320 821466 leucine-rich repeat family protein F:protein binding;P:unknown;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
138.8 99.9 140.4 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
133.2 99.9 134.1 At3g18200 821347 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF O.I. C.G. H.G.
131.3 99.9 153.1 At2g47540 819367 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
126.4 99.9 44.8 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
122.1 99.9 155.2 At5g42590 834266 CYP71A16 putative cytochrome P450 O.I. C.G. H.G.
118.3 99.9 106.6 At4g15290 827195 ATCSLB05 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
96.2 99.9 123.8 At1g72200 843552 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
84.9 99.9 159.8 At5g42250 834230 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.
82.1 99.9 187.2 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
80.0 99.9 250.5 At2g18980 816415 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
78.7 99.9 35.6 At3g44510 823576 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
78.0 99.9 358.9 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
69.9 99.9 54.0 At1g47480 841155 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
69.3 99.9 51.8 At1g53830 841820 ATPME2 encodes a pectin methylesterase O.I. C.G. H.G.
68.5 99.9 32.3 At5g15890 831446 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFOVBA O.I. C.G. H.G.
67.3 99.8 429.0 At3g01190 821314 peroxidase 27 (PER27) (P27) (PRXR7) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM O.I. C.G. H.G.
66.1 99.8 69.7 At5g24410 832512 glucosamine/galactosamine-6-phosphate isomerase-related F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP O.I. C.G. H.G.
65.7 99.8 181.1 At3g04010 819556 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB O.I. C.G. H.G.
65.2 99.8 119.2 At1g08500 837371 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P O.I. C.G. H.G.
64.2 99.8 220.2 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
63.5 99.8 78.2 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
63.0 99.8 79.0 At4g20460 827794 NAD-dependent epimerase/dehydratase family protein F:coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;P:galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:endomembrane system;BOPMAFV O.I. C.G. H.G.
62.5 99.8 146.9 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
62.5 99.8 100.2 At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV O.I. C.G. H.G.
62.3 99.8 86.1 At3g53600 824528 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF O.I. C.G. H.G.
62.3 99.8 18.7 At4g13440 826976 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
62.2 99.8 328.6 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. C.G. H.G.
61.6 99.8 58.1 At3g56230 824789 speckle-type POZ protein-related F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
61.1 99.8 54.1 At3g50640 824227 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
60.5 99.8 93.6 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
59.7 99.8 18.2 At4g01890 828220 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
59.5 99.8 75.2 At5g49270 834987 SHV2 (SHAVEN 2) Involved in successfully establishing tip growth in root hairs. O.I. C.G. H.G.
59.2 99.8 32.8 At1g27140 839603 ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
58.6 99.8 90.7 At5g15180 831370 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
57.5 99.8 54.4 At4g25250 828628 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO O.I. C.G. H.G.
57.0 99.8 35.0 At1g57560 842131 AtMYB50 (myb domain protein 50) Member of the R2R3 factor gene family. O.I. C.G. H.G.
55.2 99.8 98.9 At5g61340 836255 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
52.6 99.8 50.2 At4g37400 829894 CYP81F3 member of CYP81F O.I. C.G. H.G.
51.8 99.8 36.4 At4g31470 829274 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
49.5 99.8 86.6 At2g25160 817054 CYP82F1 member of CYP82F O.I. C.G. H.G.
47.7 99.8 131.5 At2g02960 814825 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
46.8 99.8 132.3 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF O.I. C.G. H.G.
46.8 99.8 107.9 At5g44480 834475 DUR (DEFECTIVE UGE IN ROOT) mutant has Altered lateral root; UDP Glucose Epimerase O.I. C.G. H.G.
46.7 99.8 144.3 At1g78100 844146 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
45.9 99.8 84.2 At3g24670 822063 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO O.I. C.G. H.G.
45.1 99.8 52.2 At2g16980 816201 tetracycline transporter F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF O.I. C.G. H.G.
45.0 99.8 125.6 At2g25810 817123 TIP4 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA O.I. C.G. H.G.
44.8 99.8 196.8 At3g59930 825163 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
44.1 99.8 357.5 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
43.3 99.8 120.0 At3g44320 823557 NIT3 (NITRILASE 3) This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways. O.I. C.G. H.G.
42.9 99.8 83.0 At1g22550 838861 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
42.6 99.8 68.1 At1g54120 841852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
42.4 99.8 35.6 At2g27000 817242 CYP705A8 member of CYP705A O.I. C.G. H.G.
41.4 99.8 51.9 At3g22540 821825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.1 99.8 109.4 At1g76240 843957 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;PMO O.I. C.G. H.G.
41.1 99.8 49.8 At1g14220 837983 ribonuclease T2 family protein F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOV O.I. C.G. H.G.
40.6 99.8 122.5 At2g41660 818764 MIZ1 (mizu-kussei 1) Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. O.I. C.G. H.G.
40.3 99.8 35.9 At4g20840 827832 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:apoplast, plasma membrane;FBPOAM O.I. C.G. H.G.
40.1 99.8 26.3 At2g31540 817712 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
39.8 99.8 75.2 At2g45750 819183 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
39.7 99.8 75.3 At4g09990 826590 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. C.G. H.G.
38.7 99.8 47.3 At2g34910 818056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.6 99.8 23.4 At5g43030 834318 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
37.7 99.7 45.4 At5g55250 835618 IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1) Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D. O.I. C.G. H.G.
37.6 99.7 121.6 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. O.I. C.G. H.G.
37.6 99.7 18.5 At5g24100 832475 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
37.5 99.7 13.9 At1g55430 841990 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
37.0 99.7 181.7 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
36.7 99.7 96.0 At3g27960 822420 kinesin light chain-related F:binding;P:biological_process unknown;C:plasma membrane;MBOFPAV O.I. C.G. H.G.
36.6 99.7 77.1 At2g29750 817525 UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1) F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF O.I. C.G. H.G.
35.9 99.7 469.1 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
35.8 99.7 37.5 At3g31415 822906 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
35.5 99.7 301.6 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
35.3 99.7 282.7 At2g04780 815021 FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7) fasciclin-like arabinogalactan-protein 7 (Fla7) O.I. C.G. H.G.
35.1 99.7 59.5 At1g13420 837902 ST4B (SULFOTRANSFERASE 4B) Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment. O.I. C.G. H.G.
35.0 99.7 67.3 At3g23800 821962 SBP3 (selenium-binding protein 3) F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA O.I. C.G. H.G.
34.3 99.7 84.7 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
33.7 99.7 38.3 At1g53680 841805 ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
33.2 99.7 42.4 At2g41810 818780 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
32.9 99.7 113.6 At3g01720 821091 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
32.9 99.7 41.4 At3g14370 820658 WAG2 The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. O.I. C.G. H.G.
32.9 99.7 34.6 At1g15640 838134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.7 99.7 139.1 At1g75780 843911 TUB1 beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses O.I. C.G. H.G.
32.4 99.7 57.4 At1g53180 841752 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
32.3 99.7 48.5 At2g21880 816724 ATRAB7A F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA O.I. C.G. H.G.
32.1 99.7 90.6 At5g54380 835526 THE1 (THESEUS1) F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
32.1 99.7 34.2 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
31.9 99.7 33.8 At3g18170 821344 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
31.2 99.7 83.4 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. O.I. C.G. H.G.
31.1 99.7 57.7 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
31.0 99.7 78.0 At5g19930 832115 integral membrane family protein F:unknown;P:unknown;C:endomembrane system;OBMAFP O.I. C.G. H.G.
30.9 99.7 10.4 At4g35200 829673 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
30.7 99.7 71.2 At5g25810 832650 tny (TINY) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. O.I. C.G. H.G.
30.5 99.7 54.3 At5g51060 835179 RHD2 (ROOT HAIR DEFECTIVE 2) RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. O.I. C.G. H.G.
30.4 99.7 23.2 At3g07900 819981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
30.3 99.7 51.0 At2g33990 817960 iqd9 (IQ-domain 9) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;POM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
220.9	100.0	151.0	At4g22460	828341	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
219.9	100.0	111.1	At1g05650	837072	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
201.3	100.0	114.0	At2g39040	818490	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
151.4	99.9	30.8	At3g19320	821466	leucine-rich repeat family protein	F:protein binding;P:unknown;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
138.8	99.9	140.4	At4g01630	827983	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
133.2	99.9	134.1	At3g18200	821347	nodulin MtN21 family protein	F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMF	O.I.	C.G.	H.G.
131.3	99.9	153.1	At2g47540	819367	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
126.4	99.9	44.8	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
122.1	99.9	155.2	At5g42590	834266	CYP71A16	putative cytochrome P450	O.I.	C.G.	H.G.
118.3	99.9	106.6	At4g15290	827195	ATCSLB05	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
96.2	99.9	123.8	At1g72200	843552	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
84.9	99.9	159.8	At5g42250	834230	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
82.1	99.9	187.2	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
80.0	99.9	250.5	At2g18980	816415	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
78.7	99.9	35.6	At3g44510	823576	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
78.0	99.9	358.9	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
69.9	99.9	54.0	At1g47480	841155	hydrolase	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
69.3	99.9	51.8	At1g53830	841820	ATPME2	encodes a pectin methylesterase	O.I.	C.G.	H.G.
68.5	99.9	32.3	At5g15890	831446	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PMFOVBA	O.I.	C.G.	H.G.
67.3	99.8	429.0	At3g01190	821314	peroxidase 27 (PER27) (P27) (PRXR7)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM	O.I.	C.G.	H.G.
66.1	99.8	69.7	At5g24410	832512	glucosamine/galactosamine-6-phosphate isomerase-related	F:6-phosphogluconolactonase activity;P:pentose-phosphate shunt, pentose-phosphate shunt, oxidative branch, carbohydrate metabolic process;C:cellular_component unknown;BOMFP	O.I.	C.G.	H.G.
65.7	99.8	181.1	At3g04010	819556	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOB	O.I.	C.G.	H.G.
65.2	99.8	119.2	At1g08500	837371	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
64.2	99.8	220.2	At1g67330	843054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
63.5	99.8	78.2	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
63.0	99.8	79.0	At4g20460	827794	NAD-dependent epimerase/dehydratase family protein	F:coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;P:galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:endomembrane system;BOPMAFV	O.I.	C.G.	H.G.
62.5	99.8	146.9	At4g19030	827641	NLM1	an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
62.5	99.8	100.2	At5g01320	830867	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV	O.I.	C.G.	H.G.
62.3	99.8	86.1	At3g53600	824528	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;PMF	O.I.	C.G.	H.G.
62.3	99.8	18.7	At4g13440	826976	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
62.2	99.8	328.6	At5g60660	836187	PIP2	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV	O.I.	C.G.	H.G.
61.6	99.8	58.1	At3g56230	824789	speckle-type POZ protein-related	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
61.1	99.8	54.1	At3g50640	824227	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
60.5	99.8	93.6	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
59.7	99.8	18.2	At4g01890	828220	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
59.5	99.8	75.2	At5g49270	834987	SHV2 (SHAVEN 2)	Involved in successfully establishing tip growth in root hairs.	O.I.	C.G.	H.G.
59.2	99.8	32.8	At1g27140	839603	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
58.6	99.8	90.7	At5g15180	831370	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
57.5	99.8	54.4	At4g25250	828628	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMO	O.I.	C.G.	H.G.
57.0	99.8	35.0	At1g57560	842131	AtMYB50 (myb domain protein 50)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
55.2	99.8	98.9	At5g61340	836255	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
52.6	99.8	50.2	At4g37400	829894	CYP81F3	member of CYP81F	O.I.	C.G.	H.G.
51.8	99.8	36.4	At4g31470	829274	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
49.5	99.8	86.6	At2g25160	817054	CYP82F1	member of CYP82F	O.I.	C.G.	H.G.
47.7	99.8	131.5	At2g02960	814825	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
46.8	99.8	132.3	At3g43960	823513	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF	O.I.	C.G.	H.G.
46.8	99.8	107.9	At5g44480	834475	DUR (DEFECTIVE UGE IN ROOT)	mutant has Altered lateral root; UDP Glucose Epimerase	O.I.	C.G.	H.G.
46.7	99.8	144.3	At1g78100	844146	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
45.9	99.8	84.2	At3g24670	822063	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	O.I.	C.G.	H.G.
45.1	99.8	52.2	At2g16980	816201	tetracycline transporter	F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF	O.I.	C.G.	H.G.
45.0	99.8	125.6	At2g25810	817123	TIP4	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFA	O.I.	C.G.	H.G.
44.8	99.8	196.8	At3g59930	825163	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
44.1	99.8	357.5	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
43.3	99.8	120.0	At3g44320	823557	NIT3 (NITRILASE 3)	This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.	O.I.	C.G.	H.G.
42.9	99.8	83.0	At1g22550	838861	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
42.6	99.8	68.1	At1g54120	841852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
42.4	99.8	35.6	At2g27000	817242	CYP705A8	member of CYP705A	O.I.	C.G.	H.G.
41.4	99.8	51.9	At3g22540	821825	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.1	99.8	109.4	At1g76240	843957	unknown protein	F:molecular_function unknown;P:unknown;C:chloroplast;PMO	O.I.	C.G.	H.G.
41.1	99.8	49.8	At1g14220	837983	ribonuclease T2 family protein	F:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOV	O.I.	C.G.	H.G.
40.6	99.8	122.5	At2g41660	818764	MIZ1 (mizu-kussei 1)	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	O.I.	C.G.	H.G.
40.3	99.8	35.9	At4g20840	827832	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:apoplast, plasma membrane;FBPOAM	O.I.	C.G.	H.G.
40.1	99.8	26.3	At2g31540	817712	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
39.8	99.8	75.2	At2g45750	819183	dehydration-responsive family protein	F:unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
39.7	99.8	75.3	At4g09990	826590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB	O.I.	C.G.	H.G.
38.7	99.8	47.3	At2g34910	818056	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.6	99.8	23.4	At5g43030	834318	DC1 domain-containing protein	F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
37.7	99.7	45.4	At5g55250	835618	IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)	Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.	O.I.	C.G.	H.G.
37.6	99.7	121.6	At5g42600	834267	MRN1 (MARNERAL SYNTHASE)	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.	O.I.	C.G.	H.G.
37.6	99.7	18.5	At5g24100	832475	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
37.5	99.7	13.9	At1g55430	841990	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
37.0	99.7	181.7	At1g14960	838061	major latex protein-related / MLP-related	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.7	99.7	96.0	At3g27960	822420	kinesin light chain-related	F:binding;P:biological_process unknown;C:plasma membrane;MBOFPAV	O.I.	C.G.	H.G.
36.6	99.7	77.1	At2g29750	817525	UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)	F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVF	O.I.	C.G.	H.G.
35.9	99.7	469.1	At4g12510	826863	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
35.8	99.7	37.5	At3g31415	822906	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
35.5	99.7	301.6	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
35.3	99.7	282.7	At2g04780	815021	FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)	fasciclin-like arabinogalactan-protein 7 (Fla7)	O.I.	C.G.	H.G.
35.1	99.7	59.5	At1g13420	837902	ST4B (SULFOTRANSFERASE 4B)	Encodes a sulfotransferase. Unlike the related ST4A protein (At2g14920), in vitro experiements show that this enzyme does not act brassinosteroids. ST4B is expressed in the roots and transcript levels rise in response to cytokinin treatment.	O.I.	C.G.	H.G.
35.0	99.7	67.3	At3g23800	821962	SBP3 (selenium-binding protein 3)	F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA	O.I.	C.G.	H.G.
34.3	99.7	84.7	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
33.7	99.7	38.3	At1g53680	841805	ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
33.2	99.7	42.4	At2g41810	818780	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
32.9	99.7	113.6	At3g01720	821091	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
32.9	99.7	41.4	At3g14370	820658	WAG2	The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.	O.I.	C.G.	H.G.
32.9	99.7	34.6	At1g15640	838134	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.7	99.7	139.1	At1g75780	843911	TUB1	beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses	O.I.	C.G.	H.G.
32.4	99.7	57.4	At1g53180	841752	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
32.3	99.7	48.5	At2g21880	816724	ATRAB7A	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
32.1	99.7	90.6	At5g54380	835526	THE1 (THESEUS1)	F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
32.1	99.7	34.2	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
31.9	99.7	33.8	At3g18170	821344	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
31.2	99.7	83.4	At2g32270	817787	ZIP3	A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.	O.I.	C.G.	H.G.
31.1	99.7	57.7	At5g47980	834849	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
31.0	99.7	78.0	At5g19930	832115	integral membrane family protein	F:unknown;P:unknown;C:endomembrane system;OBMAFP	O.I.	C.G.	H.G.
30.9	99.7	10.4	At4g35200	829673	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
30.7	99.7	71.2	At5g25810	832650	tny (TINY)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.	O.I.	C.G.	H.G.
30.5	99.7	54.3	At5g51060	835179	RHD2 (ROOT HAIR DEFECTIVE 2)	RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.	O.I.	C.G.	H.G.
30.4	99.7	23.2	At3g07900	819981	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
30.3	99.7	51.0	At2g33990	817960	iqd9 (IQ-domain 9)	F:calmodulin binding;P:biological_process unknown;C:plasma membrane;POM	O.I.	C.G.	H.G.

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GSM ID	GSM266670
Assay name	Arabidopsis, root cells, cortex, -Fe, replicate 2
GSE experiment	GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment

Microarray experiments to specifically-expressed genes

GSM ID GSM266670 Assay name Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE experiment GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment

GSM ID GSM266670

Assay name Arabidopsis, root cells, cortex, -Fe, replicate 2

GSE experiment GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment