Microarray experiments to specifically-expressed genes

GSM ID GSM266663
Assay name Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2
GSE experiment GSE10501: Expression analysis of root cell-types after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
284.6100.071.1At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
129.099.972.3At3g14530820678geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:chloroplast;OBFPMAVO.I.C.G.H.G.
107.399.9118.1At2g43600818962glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
103.699.9275.9At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
102.999.953.3At2g43880818992polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
93.099.9138.0At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.O.I.C.G.H.G.
90.299.953.6At1g44318841025hemb2F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAPO.I.C.G.H.G.
87.399.950.2At1g23160838924auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:unknown;OPBMFO.I.C.G.H.G.
82.499.9104.4At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
78.599.935.5At2g43480818949peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
77.099.999.6At1g69526843287UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;PBOO.I.C.G.H.G.
69.999.9128.3At5g60520836173late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
66.199.863.1At1g14220837983ribonuclease T2 family proteinF:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOVO.I.C.G.H.G.
63.099.849.2At4g23590828459aminotransferase class I and II family proteinF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
63.099.833.9At1g27140839603ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
59.699.8221.5At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
59.599.850.9At1g33750840266terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
59.599.839.4At5g14150831265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBOO.I.C.G.H.G.
57.599.814.6At2g16230816120catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
53.399.848.6At1g10560837597PUB18 (PLANT U-BOX 18)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.O.I.C.G.H.G.
51.399.855.3At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
48.799.8266.9At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
48.199.897.0At1g17890838368GER2F:coenzyme binding, binding, catalytic activity;P:GDP-L-fucose biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;BOPMAFVO.I.C.G.H.G.
48.199.844.9At2g24610816997ATCNGC14member of Cyclic nucleotide gated channel familyO.I.C.G.H.G.
47.799.858.3At2g47140819327short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
47.099.8177.7At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
44.499.834.0At5g14020831250-F:unknown;P:N-terminal protein myristoylation;C:vacuole;PO.I.C.G.H.G.
41.499.876.6At2g23630816895sks16 (SKU5 Similar 16)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
41.199.888.3At4g37160829870sks15 (SKU5 Similar 15)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
40.899.8100.7At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
39.799.8103.4At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
39.099.857.7At2g04090814945MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
38.499.839.9At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.C.G.H.G.
37.999.814.7At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
35.699.781.7At5g58784835994dehydrodolichyl diphosphate synthaseF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
35.599.7166.4At3g19430821477late embryogenesis abundant protein-related / LEA protein-relatedF:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVAO.I.C.G.H.G.
35.399.7231.0At1g52060841635-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
35.399.736.0At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusO.I.C.G.H.G.
34.499.7297.5At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
34.299.724.9At2g24300816966calmodulin-binding proteinF:calmodulin binding;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
32.999.739.8At4g37400829894CYP81F3member of CYP81FO.I.C.G.H.G.
32.899.7140.5At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
32.199.763.4At1g13730837933nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBVO.I.C.G.H.G.
32.199.739.1At5g45920834632carboxylesterase/ hydrolase/ hydrolase, acting on ester bondsF:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMOO.I.C.G.H.G.
31.799.7129.6At5g10130830877pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.C.G.H.G.
30.599.7102.6At4g19030827641NLM1an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
29.999.7109.6At4g00080828192UNE11 (unfertilized embryo sac 11)F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;PO.I.C.G.H.G.
29.599.7118.1At5g16510831513reversibly glycosylated polypeptide, putativeF:transferase activity, transferring hexosyl groups;P:response to salt stress;C:Golgi apparatus, cell junction, plant-type cell wall;PABOO.I.C.G.H.G.
29.499.725.3At1g73340843669electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAVO.I.C.G.H.G.
29.399.740.1At3g01160820504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFBPVAO.I.C.G.H.G.
28.999.754.3At1g53180841752unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
28.599.735.6At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
28.399.7188.0At3g54960824661ATPDIL1-3 (PDI-LIKE 1-3)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.O.I.C.G.H.G.
27.499.781.1At1g61580842454RPL3B (R-PROTEIN L3 B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFVO.I.C.G.H.G.
26.899.750.8At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
26.099.733.1At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
25.699.729.1At1g05280837026fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PFMOO.I.C.G.H.G.
25.599.7100.0At1g80240844364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PBO.I.C.G.H.G.
25.599.726.8At3g15240820755--O.I.C.G.H.G.
25.499.622.3At4g01240827909unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
25.399.635.2At5g19340832054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBVO.I.C.G.H.G.
25.399.616.1At1g10530837594unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PO.I.C.G.H.G.
25.199.631.1At2g43040818906NPG1 (no pollen germination 1)encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development.O.I.C.G.H.G.
24.999.623.6At2g30340817584LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBAO.I.C.G.H.G.
24.999.618.1At1g73160843647glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:unknown;BOAFPMO.I.C.G.H.G.
24.899.677.9At1g57590842135carboxylesteraseF:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOBO.I.C.G.H.G.
24.799.679.7At2g04160814953AIR3isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.O.I.C.G.H.G.
24.699.684.3At5g66280836760GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)GDP-D-mannose 4,6-dehydrataseO.I.C.G.H.G.
24.599.654.0At4g31920829322ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.O.I.C.G.H.G.
24.599.644.6At1g74490843790protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
24.299.6118.4At3g03640821201BGLU25 (BETA GLUCOSIDASE 25)Encodes beta-glucosidase (GLUC).O.I.C.G.H.G.
23.599.6208.4At1g20950838689pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-relatedF:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAMO.I.C.G.H.G.
23.599.6131.2At1g50060841430pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
23.599.666.8At3g13160820505pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBAO.I.C.G.H.G.
23.599.621.5At5g10720830938AHK5 (ARABIDOPSIS HISTIDINE KINASE 5)member of Histidine KinaseO.I.C.G.H.G.
23.399.626.1At5g57980835909RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)NRPB5-like protein of unknown function; homologous to budding yeast RPB5O.I.C.G.H.G.
23.399.620.1At3g20130821556CYP705A22member of CYP705AO.I.C.G.H.G.
23.199.6210.2At1g41830840792SKS6 (SKU5-SIMILAR 6)F:pectinesterase activity;P:unknown;C:apoplast, cell wall, membrane, plant-type cell wall;FBPMOAO.I.C.G.H.G.
22.999.618.9At2g04500814991DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POMO.I.C.G.H.G.
22.599.614.9At4g11050826706AtGH9C3 (Arabidopsis thaliana glycosyl hydrolase 9C3)F:carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
21.999.6190.3At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.C.G.H.G.
21.999.633.3At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
21.799.657.0At2g45430819151DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMFBOO.I.C.G.H.G.
21.599.6194.1At1g52070841636jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
21.499.6266.6At4g25630828668FIB2 (FIBRILLARIN 2)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.O.I.C.G.H.G.
21.399.625.2At1g07290837240nucleotide-sugar transmembrane transporterF:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
21.299.6157.7At5g26260832695meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFO.I.C.G.H.G.
21.299.615.2At1g66470842965basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:mitochondrion;PMOFO.I.C.G.H.G.
21.199.6168.1At1g52050841634jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
21.199.663.6At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.899.6234.7At3g1678082093160S ribosomal protein L19 (RPL19B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFPO.I.C.G.H.G.
20.499.632.5At1g14080837968FUT6 (FUCOSYLTRANSFERASE 6)member of Xyloglucan fucosyltransferase familyO.I.C.G.H.G.
19.699.621.6At4g12840826896unknown proteinF:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
19.499.616.6At5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
19.399.6136.5At5g61030836224GR-RBP3 (glycine-rich RNA-binding protein 3)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.O.I.C.G.H.G.
19.299.694.4At1g05620837068URH2 (URIDINE-RIBOHYDROLASE 2)F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
19.199.687.0At4g35850829739pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:unknown;C:mitochondrion;POMFBAO.I.C.G.H.G.
19.099.5151.7At3g19130821447ATRBP47B (RNA-binding protein 47B)F:RNA binding;P:unknown;C:unknown;MOPFBAVO.I.C.G.H.G.
19.099.581.7At3g06300819804AT-P4H-2 (A. THALIANA P4H ISOFORM 2)Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.O.I.C.G.H.G.
18.599.538.5At5g47950834846transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.



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