CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM265869

Assay name long 8B

GSE experiment GSE10522: Expression data of Arabidopsis thaliana rosettes during chilling

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
26.1 99.7 87.6 At3g51870 824350 binding / transporter F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV O.I. C.G. H.G.
17.1 99.5 91.8 At4g16390 827333 - F:unknown;P:unknown;C:chloroplast;POFMBA O.I. C.G. H.G.
17.0 99.5 59.9 At1g56050 842056 GTP-binding protein-related F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP O.I. C.G. H.G.
16.8 99.5 37.8 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV O.I. C.G. H.G.
14.3 99.4 246.8 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
13.5 99.4 15.4 At1g31680 - - O.I. C.G. H.G.
13.0 99.4 18.6 At5g55580 835652 mitochondrial transcription termination factor family protein / mTERF family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB O.I. C.G. H.G.
12.8 99.3 68.2 At5g23310 832395 FSD3 (FE SUPEROXIDE DISMUTASE 3) Fe superoxide dismutase O.I. C.G. H.G.
12.7 99.3 194.3 At5g13650 831209 elongation factor family protein F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast, chloroplast stroma;BOMFPA O.I. C.G. H.G.
12.5 99.3 33.6 At3g27180 822337 unknown protein F:unknown;P:unknown;C:chloroplast;BOMPAF O.I. C.G. H.G.
12.5 99.3 18.9 At3g21300 821684 RNA methyltransferase family protein F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV O.I. C.G. H.G.
12.2 99.3 26.6 At4g30720 829195 electron carrier/ oxidoreductase F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF O.I. C.G. H.G.
12.1 99.3 52.2 At5g48220 834875 indole-3-glycerol phosphate synthase, putative F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP O.I. C.G. H.G.
11.6 99.3 269.6 At4g30650 829188 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO O.I. C.G. H.G.
11.4 99.3 15.9 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. O.I. C.G. H.G.
11.3 99.3 109.4 At2g41680 818766 NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C) Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage. O.I. C.G. H.G.
11.1 99.2 19.7 At3g03630 821203 CS26 O-acetylserine (thiol) lyase O.I. C.G. H.G.
10.8 99.2 41.9 At4g04350 825755 EMB2369 (EMBRYO DEFECTIVE 2369) F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPV O.I. C.G. H.G.
10.7 99.2 30.4 At3g13180 820508 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP O.I. C.G. H.G.
10.5 99.2 112.7 At5g61660 836288 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
10.5 99.2 92.8 At1g13270 837887 MAP1C (METHIONINE AMINOPEPTIDASE 1B) Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C. O.I. C.G. H.G.
10.3 99.2 7.7 At3g17830 821051 DNAJ heat shock family protein F:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast;OBMFPAV O.I. C.G. H.G.
10.0 99.2 54.4 At3g18390 821368 EMB1865 (embryo defective 1865) F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBA O.I. C.G. H.G.
9.9 99.1 22.4 At1g70070 843343 EMB25 (EMBRYO DEFECTIVE 25) Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage. O.I. C.G. H.G.
9.8 99.1 31.9 At2g30695 817620 - F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP O.I. C.G. H.G.
9.8 99.1 14.7 At3g20440 821589 alpha-amylase/ catalytic/ cation binding F:cation binding, catalytic activity, alpha-amylase activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:chloroplast;BPOMFA O.I. C.G. H.G.
9.6 99.1 135.0 At4g19120 827650 ERD3 (early-responsive to dehydration 3) F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF O.I. C.G. H.G.
9.5 99.1 39.8 At5g08400 830738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
9.4 99.1 37.6 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
9.2 99.1 31.2 At4g27820 828895 BGLU9 (BETA GLUCOSIDASE 9) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA O.I. C.G. H.G.
8.9 99.0 44.2 At4g39960 830157 DNAJ heat shock family protein F:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAV O.I. C.G. H.G.
8.8 99.0 27.4 At5g63420 836461 emb2746 (embryo defective 2746) F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV O.I. C.G. H.G.
8.6 99.0 63.4 At3g17170 820974 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
26.1	99.7	87.6	At3g51870	824350	binding / transporter	F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV	O.I.	C.G.	H.G.
17.1	99.5	91.8	At4g16390	827333	-	F:unknown;P:unknown;C:chloroplast;POFMBA	O.I.	C.G.	H.G.
17.0	99.5	59.9	At1g56050	842056	GTP-binding protein-related	F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP	O.I.	C.G.	H.G.
16.8	99.5	37.8	At4g23940	828494	FtsH protease, putative	F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
14.3	99.4	246.8	At2g42530	818853	COR15B (COLD REGULATED 15B)	F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
13.5	99.4	15.4	At1g31680		-	-	O.I.	C.G.	H.G.
13.0	99.4	18.6	At5g55580	835652	mitochondrial transcription termination factor family protein / mTERF family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
12.8	99.3	68.2	At5g23310	832395	FSD3 (FE SUPEROXIDE DISMUTASE 3)	Fe superoxide dismutase	O.I.	C.G.	H.G.
12.7	99.3	194.3	At5g13650	831209	elongation factor family protein	F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast, chloroplast stroma;BOMFPA	O.I.	C.G.	H.G.
12.5	99.3	33.6	At3g27180	822337	unknown protein	F:unknown;P:unknown;C:chloroplast;BOMPAF	O.I.	C.G.	H.G.
12.5	99.3	18.9	At3g21300	821684	RNA methyltransferase family protein	F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV	O.I.	C.G.	H.G.
12.2	99.3	26.6	At4g30720	829195	electron carrier/ oxidoreductase	F:electron carrier activity, oxidoreductase activity;P:unknown;C:chloroplast;BOAPF	O.I.	C.G.	H.G.
12.1	99.3	52.2	At5g48220	834875	indole-3-glycerol phosphate synthase, putative	F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP	O.I.	C.G.	H.G.
11.6	99.3	269.6	At4g30650	829188	hydrophobic protein, putative / low temperature and salt responsive protein, putative	F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO	O.I.	C.G.	H.G.
11.4	99.3	15.9	At3g58070	824976	GIS (GLABROUS INFLORESCENCE STEMS)	Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.	O.I.	C.G.	H.G.
11.3	99.3	109.4	At2g41680	818766	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)	Encodes a NADPH thioredoxin reductase involved in chloroplast protection against oxidative damage.	O.I.	C.G.	H.G.
11.1	99.2	19.7	At3g03630	821203	CS26	O-acetylserine (thiol) lyase	O.I.	C.G.	H.G.
10.8	99.2	41.9	At4g04350	825755	EMB2369 (EMBRYO DEFECTIVE 2369)	F:aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBAMFPV	O.I.	C.G.	H.G.
10.7	99.2	30.4	At3g13180	820508	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein	F:RNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;BOMFAP	O.I.	C.G.	H.G.
10.5	99.2	112.7	At5g61660	836288	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
10.5	99.2	92.8	At1g13270	837887	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.	O.I.	C.G.	H.G.
10.3	99.2	7.7	At3g17830	821051	DNAJ heat shock family protein	F:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
10.0	99.2	54.4	At3g18390	821368	EMB1865 (embryo defective 1865)	F:RNA binding;P:embryonic development ending in seed dormancy;C:chloroplast;OPMFVBA	O.I.	C.G.	H.G.
9.9	99.1	22.4	At1g70070	843343	EMB25 (EMBRYO DEFECTIVE 25)	Allelic to ISE2(increased size exclusion limit of plasmodesmata 2). Mutants maintain dilated plasmodesmata at the embryonic torpedo stage.	O.I.	C.G.	H.G.
9.8	99.1	31.9	At2g30695	817620	-	F:molecular_function unknown;P:protein folding, protein transport;C:chloroplast stroma, chloroplast;BOP	O.I.	C.G.	H.G.
9.8	99.1	14.7	At3g20440	821589	alpha-amylase/ catalytic/ cation binding	F:cation binding, catalytic activity, alpha-amylase activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:chloroplast;BPOMFA	O.I.	C.G.	H.G.
9.6	99.1	135.0	At4g19120	827650	ERD3 (early-responsive to dehydration 3)	F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF	O.I.	C.G.	H.G.
9.5	99.1	39.8	At5g08400	830738	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
9.4	99.1	37.6	At1g31690	840056	amine oxidase/ copper ion binding / quinone binding	F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA	O.I.	C.G.	H.G.
9.2	99.1	31.2	At4g27820	828895	BGLU9 (BETA GLUCOSIDASE 9)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:peroxisome;BOPMFA	O.I.	C.G.	H.G.
8.9	99.0	44.2	At4g39960	830157	DNAJ heat shock family protein	F:unfolded protein binding, heat shock protein binding, ATP binding;P:protein folding, response to heat;C:chloroplast thylakoid membrane, chloroplast;OBMFPAV	O.I.	C.G.	H.G.
8.8	99.0	27.4	At5g63420	836461	emb2746 (embryo defective 2746)	F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFV	O.I.	C.G.	H.G.
8.6	99.0	63.4	At3g17170	820974	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular, chloroplast;MOBFPVA	O.I.	C.G.	H.G.

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GSM ID	GSM265869
Assay name	long 8B
GSE experiment	GSE10522: Expression data of Arabidopsis thaliana rosettes during chilling

Microarray experiments to specifically-expressed genes

GSM ID GSM265869 Assay name long 8B GSE experiment GSE10522: Expression data of Arabidopsis thaliana rosettes during chilling

GSM ID GSM265869

Assay name long 8B

GSE experiment GSE10522: Expression data of Arabidopsis thaliana rosettes during chilling