CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM265847

Assay name short 17A

GSE experiment GSE10522: Expression data of Arabidopsis thaliana rosettes during chilling

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
46.2 99.8 28.4 At1g31680 - - O.I. C.G. H.G.
33.9 99.7 71.3 At1g31690 840056 amine oxidase/ copper ion binding / quinone binding F:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBMOPA O.I. C.G. H.G.
17.2 99.5 99.5 At3g28290 822455 AT14A Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed. O.I. C.G. H.G.
16.6 99.5 266.1 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF O.I. C.G. H.G.
14.8 99.4 40.8 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
14.3 99.4 324.4 At5g52310 835307 LTI78 (LOW-TEMPERATURE-INDUCED 78) cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expression O.I. C.G. H.G.
12.2 99.3 53.7 At1g36280 840534 adenylosuccinate lyase, putative / adenylosuccinase, putative F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP O.I. C.G. H.G.
12.1 99.3 410.7 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. O.I. C.G. H.G.
11.0 99.2 262.5 At4g30650 829188 hydrophobic protein, putative / low temperature and salt responsive protein, putative F:unknown;P:response to salt stress, hyperosmotic salinity response, response to cold;C:endomembrane system, integral to membrane;BFPMO O.I. C.G. H.G.
10.4 99.2 148.2 At4g14400 827085 ACD6 (ACCELERATED CELL DEATH 6) encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. O.I. C.G. H.G.
10.2 99.2 100.1 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO O.I. C.G. H.G.
10.1 99.2 236.9 At3g46970 823850 PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. O.I. C.G. H.G.
10.1 99.2 70.8 At4g27560 828865 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV O.I. C.G. H.G.
10.0 99.2 36.3 At1g14230 837984 nucleoside phosphatase family protein / GDA1/CD39 family protein F:hydrolase activity;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
9.7 99.1 85.8 At3g02570 820656 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) Encodes a protein with phosphomannose isomerase activity. O.I. C.G. H.G.
9.5 99.1 134.9 At4g19120 827650 ERD3 (early-responsive to dehydration 3) F:unknown;P:response to water deprivation;C:cellular_component unknown;PBOAF O.I. C.G. H.G.
9.1 99.1 180.5 At1g10760 837619 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. O.I. C.G. H.G.

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