CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM265474

Assay name Arabidopsis, whole roots, -Fe, 72 hour, rep 2

GSE experiment GSE10502: Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
898.3 100.0 306.4 At3g12900 820473 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
382.6 100.0 53.5 At1g56160 842069 MYB72 (MYB DOMAIN PROTEIN 72) Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3. O.I. C.G. H.G.
342.6 100.0 225.5 At3g56980 824865 BHLH039 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF O.I. C.G. H.G.
310.1 100.0 226.1 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA O.I. C.G. H.G.
287.0 100.0 63.6 At5g04150 830293 BHLH101 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF O.I. C.G. H.G.
218.1 100.0 164.8 At1g74760 - - O.I. C.G. H.G.
207.5 100.0 145.5 At5g03570 831787 ATIREG2 (IRON-REGULATED PROTEIN 2) Encodes a tonoplast localized nickel transport protein. O.I. C.G. H.G.
179.2 100.0 24.4 At1g74770 843816 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
170.3 100.0 347.8 At4g19690 827713 IRT1 (iron-regulated transporter 1) Fe(II) transport protein (IRT1) O.I. C.G. H.G.
170.2 100.0 156.3 At5g36890 833656 BGLU42 (BETA GLUCOSIDASE 42) F:cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellulose catabolic process, carbohydrate metabolic process;C:unknown;BOPMFA O.I. C.G. H.G.
164.8 100.0 49.8 At1g12030 837755 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
161.8 99.9 45.6 At3g12820 820464 AtMYB10 (myb domain protein 10) Member of the R2R3 factor gene family. O.I. C.G. H.G.
138.0 99.9 180.0 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
131.1 99.9 60.7 At4g31940 829324 CYP82C4 member of CYP82C O.I. C.G. H.G.
117.0 99.9 50.6 At3g01350 819616 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF O.I. C.G. H.G.
112.7 99.9 74.5 At1g18910 838472 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV O.I. C.G. H.G.
112.0 99.9 91.0 At5g40590 834057 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;POF O.I. C.G. H.G.
110.2 99.9 51.3 At3g58060 824975 cation efflux family protein / metal tolerance protein, putative (MTPc3) F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BFOPAM O.I. C.G. H.G.
108.6 99.9 97.4 At5g13910 831238 LEP (LEAFY PETIOLE) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination. O.I. C.G. H.G.
108.1 99.9 27.2 At4g10510 826643 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM O.I. C.G. H.G.
105.5 99.9 74.2 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. O.I. C.G. H.G.
105.1 99.9 102.9 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. O.I. C.G. H.G.
104.9 99.9 152.9 At1g56430 842096 NAS4 (NICOTIANAMINE SYNTHASE 4) F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO O.I. C.G. H.G.
98.0 99.9 62.4 At4g19370 827678 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
97.4 99.9 14.8 At3g51200 824283 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
95.1 99.9 67.1 At5g38820 833873 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
95.0 99.9 308.4 At3g07720 819963 kelch repeat-containing protein F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA O.I. C.G. H.G.
91.9 99.9 69.5 At1g34760 840380 GRF11 (GENERAL REGULATORY FACTOR 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. O.I. C.G. H.G.
90.3 99.9 29.7 At3g61410 825313 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
88.3 99.9 245.0 At3g21240 821678 4CL2 (4-COUMARATE:COA LIGASE 2) encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate. O.I. C.G. H.G.
84.4 99.9 151.6 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
80.5 99.9 132.4 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. C.G. H.G.
78.8 99.9 450.4 At2g43610 818963 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM O.I. C.G. H.G.
71.8 99.9 35.1 At1g05700 837077 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
69.6 99.9 150.8 At4g02330 828064 ATPMEPCRB F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM O.I. C.G. H.G.
67.8 99.9 22.1 At5g07390 830630 ATRBOHA (respiratory burst oxidase homolog A) F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA O.I. C.G. H.G.
67.0 99.8 196.1 At3g50740 824238 UGT72E1 (UDP-glucosyl transferase 72E1) UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism. O.I. C.G. H.G.
58.6 99.8 55.5 At2g35270 818094 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
58.5 99.8 46.9 At3g27580 822380 ATPK7 a member of a subfamily of Ser/Thr PKs in plants. O.I. C.G. H.G.
57.3 99.8 42.4 At5g25830 832652 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM O.I. C.G. H.G.
55.8 99.8 195.1 At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. O.I. C.G. H.G.
55.0 99.8 211.8 At1g65840 842894 ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4) encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes. O.I. C.G. H.G.
53.4 99.8 91.1 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
53.4 99.8 55.5 At4g19680 827712 IRT2 encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone. O.I. C.G. H.G.
52.4 99.8 10.4 At2g19410 816460 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA O.I. C.G. H.G.
50.1 99.8 169.2 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
49.6 99.8 97.5 At3g08040 819995 FRD3 (FERRIC REDUCTASE DEFECTIVE 3) Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells. O.I. C.G. H.G.
48.7 99.8 349.9 At3g13610 820564 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
48.6 99.8 52.4 At1g71400 843481 AtRLP12 (Receptor Like Protein 12) F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
47.9 99.8 57.5 At3g48450 824004 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO O.I. C.G. H.G.
47.7 99.8 146.5 At3g18290 821357 EMB2454 (embryo defective 2454) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBV O.I. C.G. H.G.
47.5 99.8 135.0 At1g23020 838910 FRO3 Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. O.I. C.G. H.G.
46.6 99.8 91.5 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
46.5 99.8 75.4 At1g08320 837353 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
45.6 99.8 35.0 At5g01490 831754 CAX4 (CATION EXCHANGER 4) Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family. O.I. C.G. H.G.
42.8 99.8 79.5 At1g02520 839353 PGP11 (P-GLYCOPROTEIN 11) F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
40.6 99.8 91.3 At4g26060 828712 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.2 99.8 35.5 At5g58620 835976 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVA O.I. C.G. H.G.
36.3 99.7 99.6 At2g46750 819288 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA O.I. C.G. H.G.
36.0 99.7 13.0 At4g09110 826489 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
35.8 99.7 39.6 At5g61250 836246 AtGUS1 (Arabidopsis thaliana glucuronidase 1) Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted. O.I. C.G. H.G.
35.7 99.7 37.1 At1g64170 842721 ATCHX16 (CATION/H+ EXCHANGER 16) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
35.4 99.7 525.9 At1g09560 837482 GLP5 (GERMIN-LIKE PROTEIN 5) germin-like protein (GLP5) O.I. C.G. H.G.
34.9 99.7 24.3 At1g16150 838184 WAKL4 (WALL ASSOCIATED KINASE-LIKE 4) Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+. O.I. C.G. H.G.
34.5 99.7 78.3 At3g18560 821387 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
34.4 99.7 44.3 At1g77280 844064 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
33.9 99.7 88.9 At3g47730 823927 ATATH1 member of ATH subfamily O.I. C.G. H.G.
32.6 99.7 42.3 At3g15300 820761 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
32.2 99.7 189.0 At3g53480 824516 PDR9 (PLEIOTROPIC DRUG RESISTANCE 9) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
31.3 99.7 54.9 At5g25840 832653 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
30.9 99.7 23.3 At5g67430 836879 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA O.I. C.G. H.G.
30.5 99.7 67.7 At3g26440 822248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
29.8 99.7 32.7 At1g68880 843221 AtbZIP (Arabidopsis thaliana basic leucine-zipper 8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO O.I. C.G. H.G.
29.8 99.7 23.4 At1g14185 837978 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
29.6 99.7 42.1 At2g29330 817482 TRI (tropinone reductase) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
28.4 99.7 31.4 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
28.2 99.7 21.5 At1g03470 839494 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAV O.I. C.G. H.G.
27.3 99.7 13.9 At4g38830 830038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
27.1 99.7 121.7 At3g23430 821924 PHO1 (phosphate 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. O.I. C.G. H.G.
26.9 99.7 25.1 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA O.I. C.G. H.G.
26.7 99.7 121.4 At1g47400 841144 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.4 99.6 214.6 At1g35580 840454 CINV1 (cytosolic invertase 1) Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9. O.I. C.G. H.G.
25.3 99.6 30.3 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
25.2 99.6 33.5 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.6 99.6 32.0 At5g15130 831365 WRKY72 member of WRKY Transcription Factor; Group II-b O.I. C.G. H.G.
23.9 99.6 35.1 At1g09790 837508 COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
23.8 99.6 36.5 At3g47640 823918 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMO O.I. C.G. H.G.
23.6 99.6 61.6 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO O.I. C.G. H.G.
23.6 99.6 19.8 At5g52830 835360 WRKY27 Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum. O.I. C.G. H.G.
23.2 99.6 83.3 At5g58860 836003 CYP86A1 (CYTOCHROME P450 86 A1) Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue. O.I. C.G. H.G.
23.0 99.6 60.6 At1g60680 842362 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA O.I. C.G. H.G.
22.8 99.6 171.1 At5g53450 835426 ORG1 (OBP3-responsive gene 1) F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB O.I. C.G. H.G.
22.1 99.6 57.6 At2g45430 819151 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMFBO O.I. C.G. H.G.
21.5 99.6 23.1 At1g34670 840371 AtMYB93 (myb domain protein 93) Member of the R2R3 factor gene family. O.I. C.G. H.G.
21.3 99.6 160.5 At5g59090 836026 ATSBT4.12 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM O.I. C.G. H.G.
21.2 99.6 100.7 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e O.I. C.G. H.G.
21.1 99.6 81.6 At1g28680 839768 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
21.1 99.6 34.8 At4g26470 828753 calcium ion binding F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFB O.I. C.G. H.G.
21.0 99.6 55.0 At3g47780 823932 ATATH6 member of ATH subfamily O.I. C.G. H.G.
20.8 99.6 38.5 At2g47140 819327 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
898.3	100.0	306.4	At3g12900	820473	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
382.6	100.0	53.5	At1g56160	842069	MYB72 (MYB DOMAIN PROTEIN 72)	Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3.	O.I.	C.G.	H.G.
342.6	100.0	225.5	At3g56980	824865	BHLH039	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF	O.I.	C.G.	H.G.
310.1	100.0	226.1	At5g02780	831800	In2-1 protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA	O.I.	C.G.	H.G.
287.0	100.0	63.6	At5g04150	830293	BHLH101	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF	O.I.	C.G.	H.G.
218.1	100.0	164.8	At1g74760		-	-	O.I.	C.G.	H.G.
207.5	100.0	145.5	At5g03570	831787	ATIREG2 (IRON-REGULATED PROTEIN 2)	Encodes a tonoplast localized nickel transport protein.	O.I.	C.G.	H.G.
179.2	100.0	24.4	At1g74770	843816	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
170.3	100.0	347.8	At4g19690	827713	IRT1 (iron-regulated transporter 1)	Fe(II) transport protein (IRT1)	O.I.	C.G.	H.G.
170.2	100.0	156.3	At5g36890	833656	BGLU42 (BETA GLUCOSIDASE 42)	F:cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellulose catabolic process, carbohydrate metabolic process;C:unknown;BOPMFA	O.I.	C.G.	H.G.
164.8	100.0	49.8	At1g12030	837755	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
161.8	99.9	45.6	At3g12820	820464	AtMYB10 (myb domain protein 10)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
138.0	99.9	180.0	At5g45070	834538	AtPP2-A8 (Phloem protein 2-A8)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
131.1	99.9	60.7	At4g31940	829324	CYP82C4	member of CYP82C	O.I.	C.G.	H.G.
117.0	99.9	50.6	At3g01350	819616	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF	O.I.	C.G.	H.G.
112.7	99.9	74.5	At1g18910	838472	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBV	O.I.	C.G.	H.G.
112.0	99.9	91.0	At5g40590	834057	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;POF	O.I.	C.G.	H.G.
110.2	99.9	51.3	At3g58060	824975	cation efflux family protein / metal tolerance protein, putative (MTPc3)	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BFOPAM	O.I.	C.G.	H.G.
108.6	99.9	97.4	At5g13910	831238	LEP (LEAFY PETIOLE)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.	O.I.	C.G.	H.G.
108.1	99.9	27.2	At4g10510	826643	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFM	O.I.	C.G.	H.G.
105.5	99.9	74.2	At2g28160	817362	FRU (FER-LIKE REGULATOR OF IRON UPTAKE)	Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.	O.I.	C.G.	H.G.
105.1	99.9	102.9	At3g58810	825050	MTPA2 (METAL TOLERANCE PROTEIN A2)	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.	O.I.	C.G.	H.G.
104.9	99.9	152.9	At1g56430	842096	NAS4 (NICOTIANAMINE SYNTHASE 4)	F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO	O.I.	C.G.	H.G.
98.0	99.9	62.4	At4g19370	827678	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
97.4	99.9	14.8	At3g51200	824283	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
95.1	99.9	67.1	At5g38820	833873	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
95.0	99.9	308.4	At3g07720	819963	kelch repeat-containing protein	F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA	O.I.	C.G.	H.G.
91.9	99.9	69.5	At1g34760	840380	GRF11 (GENERAL REGULATORY FACTOR 11)	Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.	O.I.	C.G.	H.G.
90.3	99.9	29.7	At3g61410	825313	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
88.3	99.9	245.0	At3g21240	821678	4CL2 (4-COUMARATE:COA LIGASE 2)	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.	O.I.	C.G.	H.G.
84.4	99.9	151.6	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
80.5	99.9	132.4	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	O.I.	C.G.	H.G.
78.8	99.9	450.4	At2g43610	818963	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM	O.I.	C.G.	H.G.
71.8	99.9	35.1	At1g05700	837077	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
69.6	99.9	150.8	At4g02330	828064	ATPMEPCRB	F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM	O.I.	C.G.	H.G.
67.8	99.9	22.1	At5g07390	830630	ATRBOHA (respiratory burst oxidase homolog A)	F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA	O.I.	C.G.	H.G.
67.0	99.8	196.1	At3g50740	824238	UGT72E1 (UDP-glucosyl transferase 72E1)	UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.	O.I.	C.G.	H.G.
58.6	99.8	55.5	At2g35270	818094	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
58.5	99.8	46.9	At3g27580	822380	ATPK7	a member of a subfamily of Ser/Thr PKs in plants.	O.I.	C.G.	H.G.
57.3	99.8	42.4	At5g25830	832652	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOM	O.I.	C.G.	H.G.
55.8	99.8	195.1	At4g16370	827332	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	Encodes an oligopeptide transporter involved in metal homeostasis.	O.I.	C.G.	H.G.
55.0	99.8	211.8	At1g65840	842894	ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4)	encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes.	O.I.	C.G.	H.G.
53.4	99.8	91.1	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
53.4	99.8	55.5	At4g19680	827712	IRT2	encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.	O.I.	C.G.	H.G.
52.4	99.8	10.4	At2g19410	816460	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA	O.I.	C.G.	H.G.
50.1	99.8	169.2	At2g29995	817550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
49.6	99.8	97.5	At3g08040	819995	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.	O.I.	C.G.	H.G.
48.7	99.8	349.9	At3g13610	820564	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
48.6	99.8	52.4	At1g71400	843481	AtRLP12 (Receptor Like Protein 12)	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
47.9	99.8	57.5	At3g48450	824004	nitrate-responsive NOI protein, putative	F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
47.7	99.8	146.5	At3g18290	821357	EMB2454 (embryo defective 2454)	F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBV	O.I.	C.G.	H.G.
47.5	99.8	135.0	At1g23020	838910	FRO3	Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.	O.I.	C.G.	H.G.
46.6	99.8	91.5	At5g43520	834372	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
46.5	99.8	75.4	At1g08320	837353	bZIP family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
45.6	99.8	35.0	At5g01490	831754	CAX4 (CATION EXCHANGER 4)	Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family.	O.I.	C.G.	H.G.
42.8	99.8	79.5	At1g02520	839353	PGP11 (P-GLYCOPROTEIN 11)	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
40.6	99.8	91.3	At4g26060	828712	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.2	99.8	35.5	At5g58620	835976	zinc finger (CCCH-type) family protein	F:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVA	O.I.	C.G.	H.G.
36.3	99.7	99.6	At2g46750	819288	FAD-binding domain-containing protein	F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMA	O.I.	C.G.	H.G.
36.0	99.7	13.0	At4g09110	826489	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
35.8	99.7	39.6	At5g61250	836246	AtGUS1 (Arabidopsis thaliana glucuronidase 1)	Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.	O.I.	C.G.	H.G.
35.7	99.7	37.1	At1g64170	842721	ATCHX16 (CATION/H+ EXCHANGER 16)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
35.4	99.7	525.9	At1g09560	837482	GLP5 (GERMIN-LIKE PROTEIN 5)	germin-like protein (GLP5)	O.I.	C.G.	H.G.
34.9	99.7	24.3	At1g16150	838184	WAKL4 (WALL ASSOCIATED KINASE-LIKE 4)	Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+.	O.I.	C.G.	H.G.
34.5	99.7	78.3	At3g18560	821387	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
34.4	99.7	44.3	At1g77280	844064	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
33.9	99.7	88.9	At3g47730	823927	ATATH1	member of ATH subfamily	O.I.	C.G.	H.G.
32.6	99.7	42.3	At3g15300	820761	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
32.2	99.7	189.0	At3g53480	824516	PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
31.3	99.7	54.9	At5g25840	832653	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
30.9	99.7	23.3	At5g67430	836879	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;PBA	O.I.	C.G.	H.G.
30.5	99.7	67.7	At3g26440	822248	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
29.8	99.7	32.7	At1g68880	843221	AtbZIP (Arabidopsis thaliana basic leucine-zipper 8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMFO	O.I.	C.G.	H.G.
29.8	99.7	23.4	At1g14185	837978	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
29.6	99.7	42.1	At2g29330	817482	TRI (tropinone reductase)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
28.4	99.7	31.4	At5g45080	834539	AtPP2-A6 (Phloem protein 2-A6)	F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
28.2	99.7	21.5	At1g03470	839494	kinase interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAV	O.I.	C.G.	H.G.
27.3	99.7	13.9	At4g38830	830038	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
27.1	99.7	121.7	At3g23430	821924	PHO1 (phosphate 1)	mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.	O.I.	C.G.	H.G.
26.9	99.7	25.1	At4g25090	828612	respiratory burst oxidase, putative / NADPH oxidase, putative	F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA	O.I.	C.G.	H.G.
26.7	99.7	121.4	At1g47400	841144	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.4	99.6	214.6	At1g35580	840454	CINV1 (cytosolic invertase 1)	Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.	O.I.	C.G.	H.G.
25.3	99.6	30.3	At3g27150	822334	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
25.2	99.6	33.5	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.6	99.6	32.0	At5g15130	831365	WRKY72	member of WRKY Transcription Factor; Group II-b	O.I.	C.G.	H.G.
23.9	99.6	35.1	At1g09790	837508	COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
23.8	99.6	36.5	At3g47640	823918	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMO	O.I.	C.G.	H.G.
23.6	99.6	61.6	At5g24090	832474	acidic endochitinase (CHIB1)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO	O.I.	C.G.	H.G.
23.6	99.6	19.8	At5g52830	835360	WRKY27	Encodes a WRKY transcription factor WRKY27. Mutation in Arabidopsis WRKY27 results in delayed symptom development in response to the bacterial wilt pathogen Ralstonia solanacearum.	O.I.	C.G.	H.G.
23.2	99.6	83.3	At5g58860	836003	CYP86A1 (CYTOCHROME P450 86 A1)	Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.	O.I.	C.G.	H.G.
23.0	99.6	60.6	At1g60680	842362	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA	O.I.	C.G.	H.G.
22.8	99.6	171.1	At5g53450	835426	ORG1 (OBP3-responsive gene 1)	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFB	O.I.	C.G.	H.G.
22.1	99.6	57.6	At2g45430	819151	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;PMFBO	O.I.	C.G.	H.G.
21.5	99.6	23.1	At1g34670	840371	AtMYB93 (myb domain protein 93)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
21.3	99.6	160.5	At5g59090	836026	ATSBT4.12	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAM	O.I.	C.G.	H.G.
21.2	99.6	100.7	At1g29280	839802	WRKY65	member of WRKY Transcription Factor; Group II-e	O.I.	C.G.	H.G.
21.1	99.6	81.6	At1g28680	839768	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
21.1	99.6	34.8	At4g26470	828753	calcium ion binding	F:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFB	O.I.	C.G.	H.G.
21.0	99.6	55.0	At3g47780	823932	ATATH6	member of ATH subfamily	O.I.	C.G.	H.G.
20.8	99.6	38.5	At2g47140	819327	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.

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GSM ID	GSM265474
Assay name	Arabidopsis, whole roots, -Fe, 72 hour, rep 2
GSE experiment	GSE10502: Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots

Microarray experiments to specifically-expressed genes

GSM ID GSM265474 Assay name Arabidopsis, whole roots, -Fe, 72 hour, rep 2 GSE experiment GSE10502: Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots

GSM ID GSM265474

Assay name Arabidopsis, whole roots, -Fe, 72 hour, rep 2

GSE experiment GSE10502: Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots