Microarray experiments to specifically-expressed genes

GSM ID GSM265472
Assay name Arabidopsis, whole roots, -Fe, 48 hour, rep 2
GSE experiment GSE10502: Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
595.6100.0249.5At3g12900820473oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
332.4100.049.9At1g56160842069MYB72 (MYB DOMAIN PROTEIN 72)Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3.O.I.C.G.H.G.
327.5100.0232.4At5g02780831800In2-1 protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFAO.I.C.G.H.G.
254.1100.0161.1At5g03570831787ATIREG2 (IRON-REGULATED PROTEIN 2)Encodes a tonoplast localized nickel transport protein.O.I.C.G.H.G.
253.7100.059.8At5g04150830293BHLH101F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBFO.I.C.G.H.G.
225.8100.0167.7At1g74760--O.I.C.G.H.G.
223.8100.0182.2At3g56980824865BHLH039F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
155.799.9149.5At5g36890833656BGLU42 (BETA GLUCOSIDASE 42)F:cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellulose catabolic process, carbohydrate metabolic process;C:unknown;BOPMFAO.I.C.G.H.G.
149.099.922.2At1g74770843816protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
126.199.978.8At1g18910838472protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVO.I.C.G.H.G.
118.899.939.0At3g12820820464AtMYB10 (myb domain protein 10)Member of the R2R3 factor gene family.O.I.C.G.H.G.
117.399.993.1At5g40590834057DC1 domain-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POFO.I.C.G.H.G.
110.499.9332.5At3g07720819963kelch repeat-containing proteinF:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVAO.I.C.G.H.G.
104.399.9156.6At5g45070834538AtPP2-A8 (Phloem protein 2-A8)F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
102.199.9101.4At3g58810825050MTPA2 (METAL TOLERANCE PROTEIN A2)Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.O.I.C.G.H.G.
100.799.9267.4At4g19690827713IRT1 (iron-regulated transporter 1)Fe(II) transport protein (IRT1)O.I.C.G.H.G.
98.999.972.1At1g34760840380GRF11 (GENERAL REGULATORY FACTOR 11)Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.O.I.C.G.H.G.
92.999.9188.9At1g23020838910FRO3Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.O.I.C.G.H.G.
87.399.924.4At4g10510826643subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOAFMO.I.C.G.H.G.
86.399.9471.3At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
84.399.928.7At3g61410825313-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
81.899.968.7At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.O.I.C.G.H.G.
78.899.943.4At3g58060824975cation efflux family protein / metal tolerance protein, putative (MTPc3)F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport;C:membrane;BFOPAMO.I.C.G.H.G.
77.999.982.6At5g13910831238LEP (LEAFY PETIOLE)Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (LEAFY PETIOLE). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and LEAFY PETIOLE. Acts as a positive regulator of gibberellic acid-induced germination.O.I.C.G.H.G.
72.199.935.2At1g05700837077leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
67.999.943.7At4g31940829324CYP82C4member of CYP82CO.I.C.G.H.G.
67.899.9148.8At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMO.I.C.G.H.G.
66.099.855.9At5g38820833873amino acid transporter family proteinEncodes a putative amino acid transporter.O.I.C.G.H.G.
65.199.849.5At3g27580822380ATPK7a member of a subfamily of Ser/Thr PKs in plants.O.I.C.G.H.G.
64.299.8209.0At3g212408216784CL2 (4-COUMARATE:COA LIGASE 2)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
63.999.8132.3At2g46750819288FAD-binding domain-containing proteinF:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOPFMAO.I.C.G.H.G.
62.999.8118.3At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
61.199.8129.0At3g61930825366unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PO.I.C.G.H.G.
60.299.848.9At4g19370827678unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
59.099.855.5At2g28160817362FRU (FER-LIKE REGULATOR OF IRON UPTAKE)Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.O.I.C.G.H.G.
58.499.829.7At1g12030837755unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POO.I.C.G.H.G.
55.799.841.8At5g25830832652zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFOMO.I.C.G.H.G.
53.899.811.0At3g51200824283auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
53.599.834.3At3g01350819616proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PBMOFO.I.C.G.H.G.
51.699.819.3At5g07390830630ATRBOHA (respiratory burst oxidase homolog A)F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBAO.I.C.G.H.G.
50.999.8186.1At4g16370827332ATOPT3 (OLIGOPEPTIDE TRANSPORTER)Encodes an oligopeptide transporter involved in metal homeostasis.O.I.C.G.H.G.
48.799.852.5At1g71400843481AtRLP12 (Receptor Like Protein 12)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
47.299.857.1At3g48450824004nitrate-responsive NOI protein, putativeF:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;POO.I.C.G.H.G.
46.299.8144.2At3g18290821357EMB2454 (embryo defective 2454)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBVO.I.C.G.H.G.
46.299.894.1At3g08040819995FRD3 (FERRIC REDUCTASE DEFECTIVE 3)Encodes a member of the MATE (multidrug and toxin efflux family), expressed in roots but not shoots. Mutants accumulate excess iron, manganese and zinc, and express root Fe(III) chelatase activity even under iron sufficiency conditions. FRD3 is likely to function in root xylem loading of an iron chelator or other factor necessary for efficient iron uptake out of the xylem or apoplastic space and into leaf cells.O.I.C.G.H.G.
46.199.8340.3At3g13610820564oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, dioxygenase activity;P:coumarin biosynthetic process, response to cyclopentenone, hydrogen peroxide-mediated programmed cell death, secondary metabolic process;C:cellular_component unknown;POBFMO.I.C.G.H.G.
45.599.827.7At1g16150838184WAKL4 (WALL ASSOCIATED KINASE-LIKE 4)Encodes a cell-wall associated kinase like protein of the receptor-like kinase (RLK) superfamily. Likely involved in Arabidopsis root mineral responses to Zn2+, Cu2+, K+, Na+ and Ni+.O.I.C.G.H.G.
44.899.898.8At3g46900823843COPT2encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeastO.I.C.G.H.G.
44.199.8159.1At3g50740824238UGT72E1 (UDP-glucosyl transferase 72E1)UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism.O.I.C.G.H.G.
42.799.8186.6At1g65840842894ATPAO4 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 4)encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes.O.I.C.G.H.G.
42.799.843.3At5g61250836246AtGUS1 (Arabidopsis thaliana glucuronidase 1)Belongs to the plant glycoside hydrolase family 79. Encodes a protein with several posttranslational modification sites including O-β-GlcNAc attachment sites and serine-, threonine- and tyrosine-phosphorylation sites, suggesting that this protein is extensively modified posttranslationally. The protein is predicted (WoLF PSORT program) to be secreted.O.I.C.G.H.G.
38.799.8153.7At4g36430829795peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBMO.I.C.G.H.G.
36.699.78.7At2g19410816460protein kinase family proteinF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAO.I.C.G.H.G.
35.599.7526.5At1g09560837482GLP5 (GERMIN-LIKE PROTEIN 5)germin-like protein (GLP5)O.I.C.G.H.G.
32.699.7190.1At3g53480824516PDR9 (PLEIOTROPIC DRUG RESISTANCE 9)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
32.599.763.1At1g08320837353bZIP family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFO.I.C.G.H.G.
31.999.728.2At1g34670840371AtMYB93 (myb domain protein 93)Member of the R2R3 factor gene family.O.I.C.G.H.G.
31.599.731.8At5g58620835976zinc finger (CCCH-type) family proteinF:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVAO.I.C.G.H.G.
30.999.774.5At5g43520834372DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFO.I.C.G.H.G.
30.299.726.6At3g21070821659NADK1 (NAD KINASE 1)Encodes a protein with NAD(H) kinase activity.O.I.C.G.H.G.
30.099.739.7At2g35270818094DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOFVAO.I.C.G.H.G.
29.699.739.1At1g09790837508COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
29.699.728.2At5g01490831754CAX4 (CATION EXCHANGER 4)Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family.O.I.C.G.H.G.
29.499.799.2At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
29.399.770.5At2g01880814719PAP7 (PURPLE ACID PHOSPHATASE 7)F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPFO.I.C.G.H.G.
29.199.740.0At3g15300820761VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
29.099.714.0At4g30120829135HMA3 (HEAVY METAL ATPASE 3)encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zincO.I.C.G.H.G.
28.699.740.3At1g77280844064protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
28.399.7131.7At5g13740831219ZIF1 (ZINC INDUCED FACILITATOR 1)F:carbohydrate transmembrane transporter activity, tetracycline:hydrogen antiporter activity, sugar:hydrogen symporter activity;P:response to nematode;C:integral to membrane, membrane;BOFMAPO.I.C.G.H.G.
28.199.7124.5At1g47400841144unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
27.699.7111.1At1g02360837724chitinase, putativeF:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
26.399.7123.6At3g03640821201BGLU25 (BETA GLUCOSIDASE 25)Encodes beta-glucosidase (GLUC).O.I.C.G.H.G.
26.299.744.0At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBO.I.C.G.H.G.
26.199.7122.2At2g29995817550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.199.739.6At2g29330817482TRI (tropinone reductase)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
25.799.7118.5At3g23430821924PHO1 (phosphate 1)mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains.O.I.C.G.H.G.
25.699.7358.7At5g09530830812hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
25.399.654.5At1g68850843218peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMO.I.C.G.H.G.
25.199.684.3At2g48130819425protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PBOMO.I.C.G.H.G.
24.999.621.4At1g14185837978glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAO.I.C.G.H.G.
24.799.6173.0At5g59090836026ATSBT4.12F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, nucleus, cytoplasm;BPOFAMO.I.C.G.H.G.
24.799.662.9At5g24090832474acidic endochitinase (CHIB1)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMOO.I.C.G.H.G.
24.699.613.2At4g38830830038protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
24.599.666.0At3g18560821387unknown proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
24.499.660.0At1g02520839353PGP11 (P-GLYCOPROTEIN 11)F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
24.399.616.2At3g51540824317unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBVPAO.I.C.G.H.G.
23.899.672.2At5g12420831117unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAFO.I.C.G.H.G.
23.599.674.0At3g47730823927ATATH1member of ATH subfamilyO.I.C.G.H.G.
23.499.6205.7At1g35580840454CINV1 (cytosolic invertase 1)Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.O.I.C.G.H.G.
23.199.698.0At1g74460843787GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
23.199.616.5At1g26410839183FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cellular_component unknown;FBPOAMO.I.C.G.H.G.
22.899.654.8At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAO.I.C.G.H.G.
22.499.684.3At5g09570830816-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOO.I.C.G.H.G.
22.499.659.0At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.499.658.0At2g45430819151DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;PMFBOO.I.C.G.H.G.
22.499.642.9At3g06890819874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.899.645.7At5g25840832653unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.699.618.8At1g03470839494kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAVO.I.C.G.H.G.
21.299.634.8At4g26470828753calcium ion bindingF:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MPOFBO.I.C.G.H.G.
21.099.665.6At4g26060828712unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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