CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM265433

Assay name Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
611.1 100.0 35.4 At2g19410 816460 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA O.I. C.G. H.G.
526.7 100.0 82.1 At5g62420 836363 aldo/keto reductase family protein F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA O.I. C.G. H.G.
325.1 100.0 137.0 At4g19680 827712 IRT2 encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone. O.I. C.G. H.G.
245.4 100.0 59.3 At4g12330 826842 CYP706A7 member of CYP706A O.I. C.G. H.G.
239.4 100.0 106.5 At5g38820 833873 amino acid transporter family protein Encodes a putative amino acid transporter. O.I. C.G. H.G.
233.3 100.0 199.0 At2g01880 814719 PAP7 (PURPLE ACID PHOSPHATASE 7) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF O.I. C.G. H.G.
199.1 100.0 178.0 At1g72200 843552 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
192.3 100.0 140.1 At5g03570 831787 ATIREG2 (IRON-REGULATED PROTEIN 2) Encodes a tonoplast localized nickel transport protein. O.I. C.G. H.G.
168.6 100.0 35.5 At1g56160 842069 MYB72 (MYB DOMAIN PROTEIN 72) Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3. O.I. C.G. H.G.
161.0 99.9 162.9 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA O.I. C.G. H.G.
158.2 99.9 47.2 At5g04150 830293 BHLH101 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF O.I. C.G. H.G.
156.8 99.9 35.6 At2g20030 816522 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
148.5 99.9 88.1 At2g28160 817362 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. O.I. C.G. H.G.
143.0 99.9 79.0 At5g58010 835913 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
142.6 99.9 145.5 At3g56980 824865 BHLH039 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF O.I. C.G. H.G.
142.6 99.9 119.9 At3g58810 825050 MTPA2 (METAL TOLERANCE PROTEIN A2) Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane. O.I. C.G. H.G.
138.7 99.9 165.4 At5g42590 834266 CYP71A16 putative cytochrome P450 O.I. C.G. H.G.
137.6 99.9 40.3 At1g08990 837420 PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5) F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBO O.I. C.G. H.G.
135.8 99.9 114.2 At4g15290 827195 ATCSLB05 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
125.8 99.9 354.8 At3g07720 819963 kelch repeat-containing protein F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA O.I. C.G. H.G.
122.7 99.9 219.5 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. O.I. C.G. H.G.
121.7 99.9 123.1 At1g74760 - - O.I. C.G. H.G.
121.6 99.9 114.2 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
116.5 99.9 187.1 At5g42250 834230 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV O.I. C.G. H.G.
113.3 99.9 77.2 At1g34760 840380 GRF11 (GENERAL REGULATORY FACTOR 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. O.I. C.G. H.G.
113.3 99.9 43.4 At2g19060 816423 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
110.1 99.9 116.1 At1g08320 837353 bZIP family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF O.I. C.G. H.G.
108.3 99.9 131.3 At3g45710 823713 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA O.I. C.G. H.G.
102.6 99.9 31.6 At3g61410 825313 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
100.8 99.9 17.8 At3g09240 820080 protein kinase-related F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMBOFVA O.I. C.G. H.G.
100.6 99.9 212.7 At4g11190 826721 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
97.3 99.9 126.7 At5g25810 832650 tny (TINY) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. O.I. C.G. H.G.
97.1 99.9 49.6 At3g59710 825140 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
91.1 99.9 51.2 At3g60330 825204 AHA7 (Arabidopsis H(+)-ATPase 7) F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAV O.I. C.G. H.G.
90.2 99.9 186.1 At1g23020 838910 FRO3 Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. O.I. C.G. H.G.
87.3 99.9 83.6 At5g47950 834846 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
83.4 99.9 134.8 At3g46900 823843 COPT2 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. C.G. H.G.
77.8 99.9 105.7 At5g36890 833656 BGLU42 (BETA GLUCOSIDASE 42) F:cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellulose catabolic process, carbohydrate metabolic process;C:unknown;BOPMFA O.I. C.G. H.G.
76.7 99.9 356.1 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV O.I. C.G. H.G.
76.3 99.9 180.5 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
75.1 99.9 109.8 At5g24090 832474 acidic endochitinase (CHIB1) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO O.I. C.G. H.G.
74.8 99.9 19.1 At5g01060 831916 protein kinase family protein F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVA O.I. C.G. H.G.
72.6 99.9 53.4 At5g48290 834882 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF O.I. C.G. H.G.
72.4 99.9 36.4 At1g14185 837978 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
71.2 99.9 304.4 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB O.I. C.G. H.G.
70.8 99.9 302.7 At5g42180 834223 peroxidase 64 (PER64) (P64) (PRXR4) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM O.I. C.G. H.G.
69.8 99.9 152.5 At3g44320 823557 NIT3 (NITRILASE 3) This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways. O.I. C.G. H.G.
69.8 99.9 46.3 At1g18140 838393 LAC1 (Laccase 1) putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). O.I. C.G. H.G.
68.6 99.9 101.9 At2g25160 817054 CYP82F1 member of CYP82F O.I. C.G. H.G.
64.0 99.8 169.2 At1g02360 837724 chitinase, putative F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. C.G. H.G.
63.7 99.8 50.1 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. O.I. C.G. H.G.
63.5 99.8 237.1 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
59.0 99.8 396.7 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.8 99.8 165.7 At4g20110 827757 vacuolar sorting receptor, putative F:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFA O.I. C.G. H.G.
58.7 99.8 140.8 At3g26720 822284 glycosyl hydrolase family 38 protein F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:plasma membrane, vacuole, plant-type cell wall;MOPBFA O.I. C.G. H.G.
58.4 99.8 39.6 At5g01490 831754 CAX4 (CATION EXCHANGER 4) Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family. O.I. C.G. H.G.
57.8 99.8 91.4 At5g50560 835124 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
56.4 99.8 195.8 At3g21240 821678 4CL2 (4-COUMARATE:COA LIGASE 2) encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate. O.I. C.G. H.G.
56.0 99.8 119.6 At1g23440 838952 pyrrolidone-carboxylate peptidase family protein F:peptidase activity;P:proteolysis;C:cellular_component unknown;BAOPMF O.I. C.G. H.G.
55.7 99.8 48.1 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
55.3 99.8 124.1 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO O.I. C.G. H.G.
54.0 99.8 105.1 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
53.6 99.8 51.3 At1g76560 843989 CP12-3 F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
53.0 99.8 56.5 At2g16980 816201 tetracycline transporter F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF O.I. C.G. H.G.
51.1 99.8 280.4 At2g28670 817416 disease resistance-responsive family protein / fibroin-related F:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVA O.I. C.G. H.G.
49.9 99.8 92.2 At3g03610 821208 phagocytosis and cell motility protein ELMO1-related F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF O.I. C.G. H.G.
48.2 99.8 82.3 At5g15180 831370 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB O.I. C.G. H.G.
48.0 99.8 18.4 At4g38830 830038 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
47.8 99.8 196.0 At1g30750 839955 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV O.I. C.G. H.G.
47.8 99.8 27.7 At4g21230 827872 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
47.6 99.8 132.6 At2g41660 818764 MIZ1 (mizu-kussei 1) Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation. O.I. C.G. H.G.
47.4 99.8 124.2 At4g23700 828470 ATCHX17 (CATION/H+ EXCHANGER 17) member of Putative Na+/H+ antiporter family O.I. C.G. H.G.
45.4 99.8 89.7 At5g61340 836255 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
45.3 99.8 112.3 At3g26690 822281 ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates. O.I. C.G. H.G.
44.8 99.8 36.2 At4g15500 827222 UGT84A4 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
44.1 99.8 119.0 At1g74790 843818 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAF O.I. C.G. H.G.
44.1 99.8 82.8 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
41.8 99.8 92.6 At4g26060 828712 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.8 99.8 81.6 At1g60680 842362 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA O.I. C.G. H.G.
41.3 99.8 59.7 At3g45700 823712 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF O.I. C.G. H.G.
40.6 99.8 64.8 At4g22460 828341 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
40.5 99.8 39.2 At3g02610 820709 acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. C.G. H.G.
40.0 99.8 302.9 At3g57020 824869 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA O.I. C.G. H.G.
40.0 99.8 40.7 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family O.I. C.G. H.G.
39.9 99.8 201.6 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. O.I. C.G. H.G.
39.3 99.8 37.5 At3g18170 821344 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
38.8 99.8 140.0 At3g11550 820328 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.7 99.8 140.2 At4g33550 829494 lipid binding F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
38.5 99.8 44.2 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
38.1 99.8 164.8 At2g45220 819130 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM O.I. C.G. H.G.
37.8 99.8 144.5 At3g53230 824489 cell division cycle protein 48, putative / CDC48, putative F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV O.I. C.G. H.G.
37.6 99.7 101.2 At3g61930 825366 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P O.I. C.G. H.G.
37.2 99.7 69.9 At4g37060 829860 PLP5 (PATATIN-LIKE PROTEIN 5) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
37.2 99.7 30.4 At1g51860 841613 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
37.2 99.7 25.4 At5g26310 832700 UGT72E3 UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides. O.I. C.G. H.G.
36.3 99.7 324.3 At5g44110 834434 POP1 Encodes a member of the NAP subfamily of ABC transporters. O.I. C.G. H.G.
36.2 99.7 38.0 At1g54540 841896 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.1 99.7 304.4 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). O.I. C.G. H.G.
36.1 99.7 94.8 At5g44480 834475 DUR (DEFECTIVE UGE IN ROOT) mutant has Altered lateral root; UDP Glucose Epimerase O.I. C.G. H.G.
35.8 99.7 58.1 At1g05320 837031 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
611.1	100.0	35.4	At2g19410	816460	protein kinase family protein	F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA	O.I.	C.G.	H.G.
526.7	100.0	82.1	At5g62420	836363	aldo/keto reductase family protein	F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA	O.I.	C.G.	H.G.
325.1	100.0	137.0	At4g19680	827712	IRT2	encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.	O.I.	C.G.	H.G.
245.4	100.0	59.3	At4g12330	826842	CYP706A7	member of CYP706A	O.I.	C.G.	H.G.
239.4	100.0	106.5	At5g38820	833873	amino acid transporter family protein	Encodes a putative amino acid transporter.	O.I.	C.G.	H.G.
233.3	100.0	199.0	At2g01880	814719	PAP7 (PURPLE ACID PHOSPHATASE 7)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:unknown;C:endomembrane system;MOBPF	O.I.	C.G.	H.G.
199.1	100.0	178.0	At1g72200	843552	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
192.3	100.0	140.1	At5g03570	831787	ATIREG2 (IRON-REGULATED PROTEIN 2)	Encodes a tonoplast localized nickel transport protein.	O.I.	C.G.	H.G.
168.6	100.0	35.5	At1g56160	842069	MYB72 (MYB DOMAIN PROTEIN 72)	Encodes a member of the R2R3 transcription factor gene family that is involved in mediating induced systemic resistance. Genetic analysis of loss of function mutants and overexpressor lines indicates MYB72 is necessary but not sufficient for ISR.Interacts in vivo with EIL3.	O.I.	C.G.	H.G.
161.0	99.9	162.9	At5g02780	831800	In2-1 protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA	O.I.	C.G.	H.G.
158.2	99.9	47.2	At5g04150	830293	BHLH101	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF	O.I.	C.G.	H.G.
156.8	99.9	35.6	At2g20030	816522	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
148.5	99.9	88.1	At2g28160	817362	FRU (FER-LIKE REGULATOR OF IRON UPTAKE)	Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.	O.I.	C.G.	H.G.
143.0	99.9	79.0	At5g58010	835913	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
142.6	99.9	145.5	At3g56980	824865	BHLH039	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF	O.I.	C.G.	H.G.
142.6	99.9	119.9	At3g58810	825050	MTPA2 (METAL TOLERANCE PROTEIN A2)	Member of Zinc transporter (ZAT) family. Contributes to basic cellular Zn tolerance and controls Zn partitioning, particularly under conditions of high rates of Zn influx into the root symplasm. Localizes to the vacuolar membrane.	O.I.	C.G.	H.G.
138.7	99.9	165.4	At5g42590	834266	CYP71A16	putative cytochrome P450	O.I.	C.G.	H.G.
137.6	99.9	40.3	At1g08990	837420	PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5)	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBO	O.I.	C.G.	H.G.
135.8	99.9	114.2	At4g15290	827195	ATCSLB05	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
125.8	99.9	354.8	At3g07720	819963	kelch repeat-containing protein	F:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVA	O.I.	C.G.	H.G.
122.7	99.9	219.5	At5g42600	834267	MRN1 (MARNERAL SYNTHASE)	Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.	O.I.	C.G.	H.G.
121.7	99.9	123.1	At1g74760		-	-	O.I.	C.G.	H.G.
121.6	99.9	114.2	At5g47980	834849	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
116.5	99.9	187.1	At5g42250	834230	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV	O.I.	C.G.	H.G.
113.3	99.9	77.2	At1g34760	840380	GRF11 (GENERAL REGULATORY FACTOR 11)	Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.	O.I.	C.G.	H.G.
113.3	99.9	43.4	At2g19060	816423	GDSL-motif lipase/hydrolase family protein	F:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
110.1	99.9	116.1	At1g08320	837353	bZIP family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	O.I.	C.G.	H.G.
108.3	99.9	131.3	At3g45710	823713	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOFA	O.I.	C.G.	H.G.
102.6	99.9	31.6	At3g61410	825313	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
100.8	99.9	17.8	At3g09240	820080	protein kinase-related	F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMBOFVA	O.I.	C.G.	H.G.
100.6	99.9	212.7	At4g11190	826721	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
97.3	99.9	126.7	At5g25810	832650	tny (TINY)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis.	O.I.	C.G.	H.G.
97.1	99.9	49.6	At3g59710	825140	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
91.1	99.9	51.2	At3g60330	825204	AHA7 (Arabidopsis H(+)-ATPase 7)	F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAV	O.I.	C.G.	H.G.
90.2	99.9	186.1	At1g23020	838910	FRO3	Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.	O.I.	C.G.	H.G.
87.3	99.9	83.6	At5g47950	834846	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
83.4	99.9	134.8	At3g46900	823843	COPT2	encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast	O.I.	C.G.	H.G.
77.8	99.9	105.7	At5g36890	833656	BGLU42 (BETA GLUCOSIDASE 42)	F:cation binding, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:cellulose catabolic process, carbohydrate metabolic process;C:unknown;BOPMFA	O.I.	C.G.	H.G.
76.7	99.9	356.1	At3g29250	822580	copper ion binding / oxidoreductase	F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV	O.I.	C.G.	H.G.
76.3	99.9	180.5	At3g22570	821829	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
75.1	99.9	109.8	At5g24090	832474	acidic endochitinase (CHIB1)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMO	O.I.	C.G.	H.G.
74.8	99.9	19.1	At5g01060	831916	protein kinase family protein	F:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVA	O.I.	C.G.	H.G.
72.6	99.9	53.4	At5g48290	834882	heavy-metal-associated domain-containing protein	F:metal ion binding;P:metal ion transport;C:cellular_component unknown;POBF	O.I.	C.G.	H.G.
72.4	99.9	36.4	At1g14185	837978	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
71.2	99.9	304.4	At4g13580	826991	disease resistance-responsive family protein	F:molecular_function unknown;P:unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
70.8	99.9	302.7	At5g42180	834223	peroxidase 64 (PER64) (P64) (PRXR4)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM	O.I.	C.G.	H.G.
69.8	99.9	152.5	At3g44320	823557	NIT3 (NITRILASE 3)	This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.	O.I.	C.G.	H.G.
69.8	99.9	46.3	At1g18140	838393	LAC1 (Laccase 1)	putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).	O.I.	C.G.	H.G.
68.6	99.9	101.9	At2g25160	817054	CYP82F1	member of CYP82F	O.I.	C.G.	H.G.
64.0	99.8	169.2	At1g02360	837724	chitinase, putative	F:chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	C.G.	H.G.
63.7	99.8	50.1	At2g35000	818064	zinc finger (C3HC4-type RING finger) family protein	E3 ligase-like protein induced by chitin oligomers.	O.I.	C.G.	H.G.
63.5	99.8	237.1	At5g66390	836771	peroxidase 72 (PER72) (P72) (PRXR8)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
59.0	99.8	396.7	At2g36100	818183	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.8	99.8	165.7	At4g20110	827757	vacuolar sorting receptor, putative	F:calcium ion binding;P:intracellular protein transport, N-terminal protein myristoylation, protein targeting to vacuole;C:trans-Golgi network, integral to plasma membrane, Golgi transport complex, membrane;MOPBFA	O.I.	C.G.	H.G.
58.7	99.8	140.8	At3g26720	822284	glycosyl hydrolase family 38 protein	F:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:plasma membrane, vacuole, plant-type cell wall;MOPBFA	O.I.	C.G.	H.G.
58.4	99.8	39.6	At5g01490	831754	CAX4 (CATION EXCHANGER 4)	Encodes a cation/proton antiporter, a member of Low affinity calcium antiporter CAX2 family.	O.I.	C.G.	H.G.
57.8	99.8	91.4	At5g50560	835124	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
56.4	99.8	195.8	At3g21240	821678	4CL2 (4-COUMARATE:COA LIGASE 2)	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.	O.I.	C.G.	H.G.
56.0	99.8	119.6	At1g23440	838952	pyrrolidone-carboxylate peptidase family protein	F:peptidase activity;P:proteolysis;C:cellular_component unknown;BAOPMF	O.I.	C.G.	H.G.
55.7	99.8	48.1	At5g19970	832119	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.3	99.8	124.1	At2g39430	818528	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO	O.I.	C.G.	H.G.
54.0	99.8	105.1	At5g23840	832449	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
53.6	99.8	51.3	At1g76560	843989	CP12-3	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
53.0	99.8	56.5	At2g16980	816201	tetracycline transporter	F:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAF	O.I.	C.G.	H.G.
51.1	99.8	280.4	At2g28670	817416	disease resistance-responsive family protein / fibroin-related	F:molecular_function unknown;P:unknown;C:endomembrane system;BMOPFVA	O.I.	C.G.	H.G.
49.9	99.8	92.2	At3g03610	821208	phagocytosis and cell motility protein ELMO1-related	F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF	O.I.	C.G.	H.G.
48.2	99.8	82.3	At5g15180	831370	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB	O.I.	C.G.	H.G.
48.0	99.8	18.4	At4g38830	830038	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
47.8	99.8	196.0	At1g30750	839955	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPV	O.I.	C.G.	H.G.
47.8	99.8	27.7	At4g21230	827872	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
47.6	99.8	132.6	At2g41660	818764	MIZ1 (mizu-kussei 1)	Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.	O.I.	C.G.	H.G.
47.4	99.8	124.2	At4g23700	828470	ATCHX17 (CATION/H+ EXCHANGER 17)	member of Putative Na+/H+ antiporter family	O.I.	C.G.	H.G.
45.4	99.8	89.7	At5g61340	836255	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
45.3	99.8	112.3	At3g26690	822281	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.	O.I.	C.G.	H.G.
44.8	99.8	36.2	At4g15500	827222	UGT84A4	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
44.1	99.8	119.0	At1g74790	843818	catalytic	F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAF	O.I.	C.G.	H.G.
44.1	99.8	82.8	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
41.8	99.8	92.6	At4g26060	828712	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.8	99.8	81.6	At1g60680	842362	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOMFPA	O.I.	C.G.	H.G.
41.3	99.8	59.7	At3g45700	823712	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PMBOF	O.I.	C.G.	H.G.
40.6	99.8	64.8	At4g22460	828341	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
40.5	99.8	39.2	At3g02610	820709	acyl-[acyl-carrier-protein] desaturase/ oxidoreductase/ transition metal ion binding	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	C.G.	H.G.
40.0	99.8	302.9	At3g57020	824869	strictosidine synthase family protein	F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum, vacuole;PMBOFA	O.I.	C.G.	H.G.
40.0	99.8	40.7	At5g42580	834265	CYP705A12	a member of the cytochrome P450 family	O.I.	C.G.	H.G.
39.9	99.8	201.6	At5g47990	834850	CYP705A5	encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings.	O.I.	C.G.	H.G.
39.3	99.8	37.5	At3g18170	821344	transferase, transferring glycosyl groups	F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
38.8	99.8	140.0	At3g11550	820328	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.7	99.8	140.2	At4g33550	829494	lipid binding	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
38.5	99.8	44.2	At1g66800	842998	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
38.1	99.8	164.8	At2g45220	819130	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
37.8	99.8	144.5	At3g53230	824489	cell division cycle protein 48, putative / CDC48, putative	F:hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding;P:response to cadmium ion;C:cytosol, nucleolus, plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
37.6	99.7	101.2	At3g61930	825366	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;P	O.I.	C.G.	H.G.
37.2	99.7	69.9	At4g37060	829860	PLP5 (PATATIN-LIKE PROTEIN 5)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
37.2	99.7	30.4	At1g51860	841613	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
37.2	99.7	25.4	At5g26310	832700	UGT72E3	UGT72E3 is an UDPG:coniferyl alcohol glucosyltransferase which glucosylates sinapyl- and coniferyl alcohol as well as sinapic acid. The enzyme is thought to be involved in lignin- and phenylpropanoid metabolism. A knockdown mutant line (72E3KD) was obtained using RNAi silencing. No reduction in coniferyl alcohol 4-O-glucoside and sinapyl alcohol 4-O-glucoside was detected in this line compared to wildtype, in contrast with the knockdown line constructed for UGT72E2 displayed a twofold reduction in the these phenylpropanoid 4-O-glucosides.	O.I.	C.G.	H.G.
36.3	99.7	324.3	At5g44110	834434	POP1	Encodes a member of the NAP subfamily of ABC transporters.	O.I.	C.G.	H.G.
36.2	99.7	38.0	At1g54540	841896	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.1	99.7	304.4	At5g47450	834794	AtTIP2	Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3).	O.I.	C.G.	H.G.
36.1	99.7	94.8	At5g44480	834475	DUR (DEFECTIVE UGE IN ROOT)	mutant has Altered lateral root; UDP Glucose Epimerase	O.I.	C.G.	H.G.
35.8	99.7	58.1	At1g05320	837031	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.

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GSM ID	GSM265433
Assay name	Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2
GSE experiment	GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Microarray experiments to specifically-expressed genes

GSM ID GSM265433 Assay name Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

GSM ID GSM265433

Assay name Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment