Microarray experiments to specifically-expressed genes

GSM ID GSM265430
Assay name Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1
GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
384.6100.066.8At1g63450842651catalyticF:catalytic activity;P:unknown;C:membrane;POMO.I.C.G.H.G.
370.2100.059.5At1g30850839969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
340.4100.0180.9At4g15290827195ATCSLB05encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
298.2100.0131.2At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.O.I.C.G.H.G.
283.5100.024.1At2g19410816460protein kinase family proteinF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAO.I.C.G.H.G.
262.6100.0165.5At1g12560837813ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.O.I.C.G.H.G.
261.4100.0200.9At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
256.1100.048.3At1g52660841698ATP bindingF:ATP binding;P:defense response, apoptosis;C:unknown;PBOAMO.I.C.G.H.G.
247.7100.042.8At3g21340821688leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
244.2100.0118.8At2g34910818056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
220.1100.0105.2At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
212.6100.0109.8At2g41970818797protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
210.1100.0193.6At2g47540819367pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
206.0100.0185.0At5g04960830378pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
197.0100.082.3At2g18800816395XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
188.8100.037.3At3g07070819893protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
186.8100.046.9At1g08990837420PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5)F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBOO.I.C.G.H.G.
185.9100.0126.7At3g45700823712proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBOFO.I.C.G.H.G.
178.6100.0159.3At2g45750819183dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
172.0100.0156.8At4g09990826590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
164.299.950.0At5g15890831446unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMFOVBAO.I.C.G.H.G.
159.999.953.6At4g01140828157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
158.299.993.1At3g56230824789speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
154.299.966.5At3g60330825204AHA7 (Arabidopsis H(+)-ATPase 7)F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAVO.I.C.G.H.G.
153.499.927.5At2g45890819197ROPGEF4 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.C.G.H.G.
152.299.976.7At1g53830841820ATPME2encodes a pectin methylesteraseO.I.C.G.H.G.
150.699.9149.5At3g56980824865BHLH039F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
148.399.980.5At1g53680841805ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
147.499.916.9At1g16440838214kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVAO.I.C.G.H.G.
146.299.9117.9At5g49270834987SHV2 (SHAVEN 2)Involved in successfully establishing tip growth in root hairs.O.I.C.G.H.G.
145.799.983.1At5g38820833873amino acid transporter family proteinEncodes a putative amino acid transporter.O.I.C.G.H.G.
142.799.9163.0At1g48930841315AtGH9C1 (Arabidopsis thaliana glycosyl hydrolase 9C1)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
139.299.9147.9At1g62980842601ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
137.299.9139.6At4g01630827983ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
132.999.934.3At3g18450821374unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
131.199.985.8At1g05650837072polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
128.599.928.0At5g23030832367TET12 (TETRASPANIN12)Member of TETRASPANIN familyO.I.C.G.H.G.
128.499.939.2At4g29180829039leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
113.999.9209.2At1g23020838910FRO3Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.O.I.C.G.H.G.
110.599.9312.7At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
102.999.962.4At1g43020840901unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
101.299.942.3At3g07900819981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
101.099.955.7At1g18140838393LAC1 (Laccase 1)putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).O.I.C.G.H.G.
100.699.9116.6At3g18200821347nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMFO.I.C.G.H.G.
97.999.9156.2At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
97.199.931.7At2g04680815011DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
97.099.9311.6At3g07720819963kelch repeat-containing proteinF:molecular_function unknown;P:unknown;C:nucleus, cytoplasm;MOPFBVAO.I.C.G.H.G.
93.499.9128.6At5g61340836255unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PBO.I.C.G.H.G.
91.699.931.4At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOO.I.C.G.H.G.
91.599.9101.2At2g39110818497protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
89.599.994.2At4g20460827794NAD-dependent epimerase/dehydratase family proteinF:coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity;P:galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process;C:endomembrane system;BOPMAFVO.I.C.G.H.G.
89.299.976.5At3g26610822270polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
88.799.992.6At5g51060835179RHD2 (ROOT HAIR DEFECTIVE 2)RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.O.I.C.G.H.G.
88.099.9147.9At5g44480834475DUR (DEFECTIVE UGE IN ROOT)mutant has Altered lateral root; UDP Glucose EpimeraseO.I.C.G.H.G.
86.699.938.1At5g66815836815unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
85.899.937.5At1g70460843382protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVAO.I.C.G.H.G.
85.399.9172.9At2g25810817123TIP4F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAO.I.C.G.H.G.
84.999.926.2At2g20030816522zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBO.I.C.G.H.G.
84.699.937.5At2g19060816423GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
80.599.9134.2At1g30900839974vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBFAO.I.C.G.H.G.
77.699.982.4At4g11210826723disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
76.799.944.9At2g44110819017MLO15 (MILDEW RESISTANCE LOCUS O 15)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
76.099.924.6At3g12540820433unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.C.G.H.G.
75.499.976.2At4g16563827356aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOO.I.C.G.H.G.
75.099.9102.9At1g01750839281ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)F:actin binding;P:biological_process unknown;C:intracellular;MPOFBO.I.C.G.H.G.
74.099.920.8At5g65160836639tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPAO.I.C.G.H.G.
72.199.953.6At4g34580829610COW1 (CAN OF WORMS1)Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.O.I.C.G.H.G.
71.799.977.5At1g65610842872KOR2F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;PBMOFO.I.C.G.H.G.
70.099.9165.9At3g01720821091unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
69.299.972.7At3g11320820304organic anion transmembrane transporterF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBAO.I.C.G.H.G.
69.199.938.5At4g17220827434ATMAP70-5 (microtubule-associated proteins 70-5)Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues.O.I.C.G.H.G.
68.899.938.4At1g57560842131AtMYB50 (myb domain protein 50)Member of the R2R3 factor gene family.O.I.C.G.H.G.
68.699.949.5At4g33730829515pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
67.099.899.3At2g44300819038lipid transfer protein-relatedF:lipid binding;P:lipid transport;C:plasma membrane, anchored to membrane;PO.I.C.G.H.G.
66.099.845.9At4g20840827832FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:apoplast, plasma membrane;FBPOAMO.I.C.G.H.G.
65.699.831.3At1g69240843255MES15 (METHYL ESTERASE 15)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
64.499.816.3At4g26770828784phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groupsF:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFPO.I.C.G.H.G.
63.599.857.6At2g28160817362FRU (FER-LIKE REGULATOR OF IRON UPTAKE)Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake.O.I.C.G.H.G.
63.099.864.0At3g22540821825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
62.799.898.7At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
62.599.817.6At2g03370814866transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:endomembrane system;PMOBFO.I.C.G.H.G.
62.499.8176.6At3g04010819556glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;PFOBO.I.C.G.H.G.
60.799.8319.7At5g17820831650peroxidase 57 (PER57) (P57) (PRXR10)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOMO.I.C.G.H.G.
60.499.8160.5At3g22570821829protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
60.199.813.1At3g46400823790leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
59.099.818.2At4g13440826976calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
59.099.817.1At1g09170837437kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBO.I.C.G.H.G.
58.999.829.4At1g75620843897glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOO.I.C.G.H.G.
58.699.859.4At2g16980816201tetracycline transporterF:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAFO.I.C.G.H.G.
58.599.820.3At4g38830830038protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
55.899.837.7At4g31470829274pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
55.799.889.5At3g28550822485proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVAO.I.C.G.H.G.
55.399.8194.0At3g212408216784CL2 (4-COUMARATE:COA LIGASE 2)encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.O.I.C.G.H.G.
55.199.859.7At2g39040818490peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
54.899.878.5At4g00680828037ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)F:actin binding;P:biological_process unknown;C:intracellular;MPOFBO.I.C.G.H.G.
54.499.875.0At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
54.499.853.5At1g34760840380GRF11 (GENERAL REGULATORY FACTOR 11)Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.O.I.C.G.H.G.
53.799.8201.6At1g67330843054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
53.399.841.8At4g22110828300alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
53.099.8116.5At5g54380835526THE1 (THESEUS1)F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage