Microarray experiments to specifically-expressed genes

GSM ID GSM265427
Assay name Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 2
GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
168.7100.052.6At3g62760825451ATGSTF13Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
120.099.921.0At2g16230816120catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
94.799.963.2At5g48940834952leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
90.299.9137.4At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVO.I.C.G.H.G.
87.199.917.3At5g40320834030DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POMO.I.C.G.H.G.
62.799.8153.0At1g73620843696thaumatin-like protein, putative / pathogenesis-related protein, putativeF:unknown;P:response to other organism;C:membrane;PMFBOO.I.C.G.H.G.
58.399.833.0At2g23050816835NPY4 (NAKED PINS IN YUC MUTANTS 4)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.O.I.C.G.H.G.
57.599.841.0At5g57980835909RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)NRPB5-like protein of unknown function; homologous to budding yeast RPB5O.I.C.G.H.G.
53.799.839.0At3g15240820755--O.I.C.G.H.G.
53.299.8100.0At1g65570842868polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
46.299.897.2At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.O.I.C.G.H.G.
45.699.822.0At3g30350822736unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
44.899.8192.2At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
42.499.8100.8At1g61580842454RPL3B (R-PROTEIN L3 B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFVO.I.C.G.H.G.
41.999.859.0At5g48110834863terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMOO.I.C.G.H.G.
38.899.8135.9At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
37.799.770.7At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
36.199.728.4At3g03680821190C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVAO.I.C.G.H.G.
32.799.764.9At1g69526843287UbiE/COQ5 methyltransferase family proteinF:methyltransferase activity;P:unknown;C:chloroplast;PBOO.I.C.G.H.G.
32.199.722.7At3g03130821080unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
32.199.716.2At1g03840839396MGP (Magpie)MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.O.I.C.G.H.G.
31.999.772.2At4g31810829310enoyl-CoA hydratase/isomerase family proteinF:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPAO.I.C.G.H.G.
31.599.743.3At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
31.299.7100.0At5g56500835751ATP binding / protein bindingF:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAVO.I.C.G.H.G.
30.499.7149.5At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
30.199.746.5At5g15980831455pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBFO.I.C.G.H.G.
29.799.7189.3At3g20000821538TOM40Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.O.I.C.G.H.G.
29.799.746.7At5g5924083604240S ribosomal protein S8 (RPS8B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFPO.I.C.G.H.G.
28.599.759.8At1g13730837933nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBVO.I.C.G.H.G.
28.199.734.9At1g33750840266terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POO.I.C.G.H.G.
28.099.777.0At2g45730819181eukaryotic initiation factor 3 gamma subunit family proteinF:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOPO.I.C.G.H.G.
27.899.7123.6At3g13860820599HSP60-3A (HEAT SHOCK PROTEIN 60-3A)F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAVO.I.C.G.H.G.
27.399.759.2At5g10240830888ASN3 (ASPARAGINE SYNTHETASE 3)Encodes asparagine synthetase (ASN3).O.I.C.G.H.G.
26.899.7102.7At1g80270844367DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMFO.I.C.G.H.G.
26.499.7264.4At3g1678082093160S ribosomal protein L19 (RPL19B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFPO.I.C.G.H.G.
26.399.7117.4At4g33260829462CDC20.2putative cdc20 protein (CDC20.2)O.I.C.G.H.G.
25.999.761.8At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
25.299.679.2At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
25.299.672.9At3g16310820878mitotic phosphoprotein N' end (MPPN) family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFO.I.C.G.H.G.
25.199.661.8At5g57280835833methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
24.999.6100.6At3g55010824667PUR5encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)O.I.C.G.H.G.
24.799.641.7At3g26410822245methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:endomembrane system;MAFOPBO.I.C.G.H.G.
24.799.632.3At5g02820831314RHL2 (ROOT HAIRLESS 2)Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplicationO.I.C.G.H.G.
24.199.6283.3At3g57150824882NAP57 (Arabidopsis thaliana homologue of NAP57)Encodes a putative pseudouridine synthase (NAP57).O.I.C.G.H.G.
23.899.649.1At1g02690839517IMPA-6 (IMPORTIN ALPHA ISOFORM 6)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.O.I.C.G.H.G.
23.799.6227.6At5g14520831303pescadillo-relatedF:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOPO.I.C.G.H.G.
23.699.644.1At5g23300832394PYRD (pyrimidine d)dihydroorotate dehydrogenase, catalyses fourth step of pyrimidine biosynthesisO.I.C.G.H.G.
23.499.6109.8At1g04870839393PRMT10Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.C.G.H.G.
23.199.6115.8At1g64880842796ribosomal protein S5 family proteinF:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPVO.I.C.G.H.G.
23.099.638.9At3g12860820468nucleolar protein Nop56, putativeF:unknown;P:biological_process unknown;C:unknown;MOFPBAVO.I.C.G.H.G.
22.699.6273.7At4g25630828668FIB2 (FIBRILLARIN 2)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.O.I.C.G.H.G.
22.599.612.5At1g01110839394IQD18 (IQ-domain 18)F:molecular_function unknown;P:unknown;C:mitochondrion;OPMFBVO.I.C.G.H.G.
22.199.649.0At5g17160831580unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAO.I.C.G.H.G.
21.799.6188.0At5g14800831332P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.O.I.C.G.H.G.
21.799.631.6At4g17610827480tRNA/rRNA methyltransferase (SpoU) family proteinF:RNA binding, RNA methyltransferase activity;P:RNA processing;C:endomembrane system;BOMPFAO.I.C.G.H.G.
20.899.6105.8At2g35605818127SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMVO.I.C.G.H.G.
20.899.639.8At1g03110839572transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPAO.I.C.G.H.G.
20.799.636.6At1g06560837167NOL1/NOP2/sun family proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;BOMAFPO.I.C.G.H.G.
20.699.6102.7At3g1125082029660S acidic ribosomal protein P0 (RPP0C)F:structural constituent of ribosome;P:translational elongation, response to salt stress, translation;C:cytosolic ribosome, ribosome, membrane;MOFAPBO.I.C.G.H.G.
20.499.6157.2At3g19130821447ATRBP47B (RNA-binding protein 47B)F:RNA binding;P:unknown;C:unknown;MOPFBAVO.I.C.G.H.G.
20.399.636.5At3g11520820325CYCB1Encodes a B-type mitotic cyclin.O.I.C.G.H.G.
20.199.663.3At2g37790818356aldo/keto reductase family proteinF:oxidoreductase activity;P:oxidation reduction;C:cytosol, nucleus;BOMFPAO.I.C.G.H.G.
20.199.634.8At5g45140834550NRPC2Encodes a subunit of RNA polymerase III (aka RNA polymerase C).O.I.C.G.H.G.
19.799.628.8At3g18510821381unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
19.699.635.3At5g22790832342RER1 (RETICULATA-RELATED 1)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid, chloroplast inner membrane, chloroplast envelope;MOBPFVAO.I.C.G.H.G.
19.499.642.0At3g63130825488RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1)Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation.O.I.C.G.H.G.
19.399.6106.0At2g40660818661tRNA-binding region domain-containing proteinF:tRNA binding;P:tRNA aminoacylation for protein translation;C:unknown;BOMAFPVO.I.C.G.H.G.
19.399.629.5At3g58100824979PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.O.I.C.G.H.G.
19.199.687.0At4g35850829739pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:unknown;C:mitochondrion;POMFBAO.I.C.G.H.G.
19.099.533.5At1g53140841748dynamin family proteinEncodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.O.I.C.G.H.G.
18.999.539.8At4g11120826713translation elongation factor Ts (EF-Ts), putativeF:translation elongation factor activity;P:translational elongation;C:mitochondrion;BOPMFO.I.C.G.H.G.
18.999.526.6At3g03060821146ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAVO.I.C.G.H.G.
18.899.559.8At3g13160820505pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBAO.I.C.G.H.G.
18.799.557.9At3g24240822011leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
18.799.546.8At4g2362082846250S ribosomal protein-relatedF:structural constituent of ribosome, 5S rRNA binding;P:translation;C:ribosome, intracellular;OBPO.I.C.G.H.G.
18.699.5131.2At4g24830828586arginosuccinate synthase familyF:argininosuccinate synthase activity, ATP binding;P:arginine biosynthetic process;C:chloroplast stroma, chloroplast;OBMAFPO.I.C.G.H.G.
18.699.567.2At3g17465821011RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)encodes a putative L3 ribosomal protein targeted to the plastid.O.I.C.G.H.G.
18.699.533.5At1g06720837182-F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVAO.I.C.G.H.G.
18.499.510.3At5g52170835293HDG7 (HOMEODOMAIN GLABROUS 7)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
18.199.543.9At5g49020834961PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A)Encodes a type I protein arginine methyltransferase. PRMT4a can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.C.G.H.G.
18.099.5183.9At1g56110842063NOP56 (Arabidopsis homolog of nucleolar protein Nop56)NOP56-like proteinO.I.C.G.H.G.
18.099.559.8At1g72090843540radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, membrane;OBAMPO.I.C.G.H.G.
18.099.520.7At5g60730836194anion-transporting ATPase family proteinF:ATP binding;P:cellular metal ion homeostasis, anion transport;C:membrane;BOAMFPO.I.C.G.H.G.
17.999.549.5At3g12270820407PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPAO.I.C.G.H.G.
17.999.533.2At2g25355817074exonuclease-relatedF:RNA binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MFOPAO.I.C.G.H.G.
17.999.529.3At5g56220835721nucleoside-triphosphatase/ nucleotide bindingF:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVAO.I.C.G.H.G.
17.899.529.3At3g13175820507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.799.552.1At2g18330816348AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
17.799.544.0At5g13520831196peptidase M1 family proteinF:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAPO.I.C.G.H.G.
17.599.5180.1At1g20950838689pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-relatedF:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAMO.I.C.G.H.G.
17.599.533.2At3g20430821588unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBO.I.C.G.H.G.
17.499.573.3At1g63050842608membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBPO.I.C.G.H.G.
17.399.564.2At4g26760828783MAP65-2F:molecular_function unknown;P:anaphase;C:cortical microtubule, preprophase band, phragmoplast;MOBFPAVO.I.C.G.H.G.
17.299.552.6At3g11964820370RNA bindingF:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPAO.I.C.G.H.G.
17.199.544.9At2g47790819391transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAO.I.C.G.H.G.
16.999.526.5At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.C.G.H.G.
16.799.542.3At1g73180843652eukaryotic translation initiation factor-relatedF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPBO.I.C.G.H.G.
16.799.538.2At3g14120820629-F:molecular_function unknown;P:transport;C:nuclear pore;MFPOO.I.C.G.H.G.
16.599.5145.3At3g02530821160chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:membrane, cytoplasm;BOMFPAO.I.C.G.H.G.
16.599.5109.7At1g63660842670GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putativeF:catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding;P:in 6 processes;C:unknown;OBAFMPO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage