CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM265426

Assay name Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
80.5 99.9 38.8 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
61.6 99.8 31.8 At3g62760 825451 ATGSTF13 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
60.0 99.8 41.8 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
58.9 99.8 93.5 At3g56980 824865 BHLH039 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF O.I. C.G. H.G.
57.5 99.8 146.5 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
56.2 99.8 48.7 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
55.4 99.8 115.3 At1g61580 842454 RPL3B (R-PROTEIN L3 B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV O.I. C.G. H.G.
47.1 99.8 99.3 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
46.3 99.8 55.3 At3g12860 820468 nucleolar protein Nop56, putative F:unknown;P:biological_process unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
44.2 99.8 94.7 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
36.5 99.7 131.7 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
36.1 99.7 107.5 At5g56500 835751 ATP binding / protein binding F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAV O.I. C.G. H.G.
35.1 99.7 66.4 At1g13730 837933 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBV O.I. C.G. H.G.
33.9 99.7 83.3 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
32.8 99.7 134.2 At5g57990 835910 UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23) Encodes a ubiquitin-specific protease. O.I. C.G. H.G.
32.7 99.7 30.4 At3g15240 820755 - - O.I. C.G. H.G.
30.6 99.7 46.9 At5g15980 831455 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF O.I. C.G. H.G.
30.0 99.7 10.5 At2g16230 816120 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
29.9 99.7 79.6 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
29.7 99.7 109.9 At3g55010 824667 PUR5 encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR) O.I. C.G. H.G.
29.1 99.7 41.9 At1g06720 837182 - F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVA O.I. C.G. H.G.
27.9 99.7 15.1 At1g03840 839396 MGP (Magpie) MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations. O.I. C.G. H.G.
27.3 99.7 302.0 At3g57150 824882 NAP57 (Arabidopsis thaliana homologue of NAP57) Encodes a putative pseudouridine synthase (NAP57). O.I. C.G. H.G.
26.9 99.7 224.7 At1g56110 842063 NOP56 (Arabidopsis homolog of nucleolar protein Nop56) NOP56-like protein O.I. C.G. H.G.
26.8 99.7 52.0 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. C.G. H.G.
26.5 99.7 264.8 At3g16780 820931 60S ribosomal protein L19 (RPL19B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP O.I. C.G. H.G.
26.5 99.7 63.5 At5g57280 835833 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
26.5 99.7 31.8 At3g56990 824866 EDA7 (embryo sac development arrest 7) F:molecular_function unknown;P:megagametogenesis;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOPBV O.I. C.G. H.G.
26.3 99.7 295.3 At4g25630 828668 FIB2 (FIBRILLARIN 2) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. O.I. C.G. H.G.
26.2 99.7 101.6 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF O.I. C.G. H.G.
26.2 99.7 80.9 At5g27120 832770 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein O.I. C.G. H.G.
25.5 99.7 157.2 At5g61030 836224 GR-RBP3 (glycine-rich RNA-binding protein 3) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. O.I. C.G. H.G.
25.5 99.7 64.6 At4g31810 829310 enoyl-CoA hydratase/isomerase family protein F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA O.I. C.G. H.G.
25.3 99.6 174.8 At3g20000 821538 TOM40 Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. O.I. C.G. H.G.
25.2 99.6 58.7 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA O.I. C.G. H.G.
25.1 99.6 43.7 At1g03110 839572 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA O.I. C.G. H.G.
24.9 99.6 42.7 At5g59240 836042 40S ribosomal protein S8 (RPS8B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP O.I. C.G. H.G.
24.8 99.6 113.0 At1g04870 839393 PRMT10 Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts. O.I. C.G. H.G.
24.8 99.6 81.4 At4g30930 829217 NFD1 (NUCLEAR FUSION DEFECTIVE 1) Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells). O.I. C.G. H.G.
24.3 99.6 115.4 At3g13860 820599 HSP60-3A (HEAT SHOCK PROTEIN 60-3A) F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAV O.I. C.G. H.G.
24.2 99.6 61.3 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
23.9 99.6 41.1 At3g26410 822245 methyltransferase/ nucleic acid binding F:methyltransferase activity, nucleic acid binding;P:methylation;C:endomembrane system;MAFOPB O.I. C.G. H.G.
23.4 99.6 211.4 At4g02930 828134 elongation factor Tu, putative / EF-Tu, putative F:translation elongation factor activity, ATP binding;P:translational elongation;C:mitochondrion, cell wall;BOMFPAV O.I. C.G. H.G.
23.4 99.6 9.0 At5g40320 834030 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
22.8 99.6 166.1 At3g19130 821447 ATRBP47B (RNA-binding protein 47B) F:RNA binding;P:unknown;C:unknown;MOPFBAV O.I. C.G. H.G.
22.0 99.6 121.6 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
21.9 99.6 28.6 At3g03060 821146 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV O.I. C.G. H.G.
21.6 99.6 57.5 At2g18330 816348 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
21.5 99.6 93.3 At1g53645 841801 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MOFPBVA O.I. C.G. H.G.
21.5 99.6 63.9 At3g13160 820505 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBA O.I. C.G. H.G.
21.5 99.6 56.3 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.4 99.6 51.8 At2g39795 818565 mitochondrial glycoprotein family protein / MAM33 family protein F:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMB O.I. C.G. H.G.
21.3 99.6 37.4 At1g13160 837874 SDA1 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
21.3 99.6 21.9 At3g03680 821190 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA O.I. C.G. H.G.
21.0 99.6 47.4 At1g73180 843652 eukaryotic translation initiation factor-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPB O.I. C.G. H.G.
20.7 99.6 52.4 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
20.2 99.6 108.2 At1g64880 842796 ribosomal protein S5 family protein F:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPV O.I. C.G. H.G.
20.2 99.6 44.2 At5g16750 831538 TOZ (TORMOZEMBRYO DEFECTIVE) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. O.I. C.G. H.G.
20.1 99.6 28.0 At5g54910 835582 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAV O.I. C.G. H.G.
20.0 99.6 87.3 At4g38890 830044 dihydrouridine synthase family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA O.I. C.G. H.G.
20.0 99.6 36.0 At1g06560 837167 NOL1/NOP2/sun family protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP O.I. C.G. H.G.
19.8 99.6 120.7 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
19.7 99.6 99.3 At5g52820 835359 WD-40 repeat family protein / notchless protein, putative F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV O.I. C.G. H.G.
19.7 99.6 67.1 At2g16570 816156 ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1) Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis O.I. C.G. H.G.
19.7 99.6 35.3 At3g20430 821588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
19.6 99.6 30.2 At1g04020 839329 BARD1 (BREAST CANCER ASSOCIATED RING 1) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein�protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. O.I. C.G. H.G.
19.6 99.6 17.7 At3g03130 821080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
19.4 99.6 205.9 At5g14520 831303 pescadillo-related F:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOP O.I. C.G. H.G.
19.4 99.6 171.3 At1g52060 841635 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB O.I. C.G. H.G.
19.4 99.6 52.0 At1g77550 844091 protein binding / tubulin-tyrosine ligase F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB O.I. C.G. H.G.
19.4 99.6 45.1 At5g38110 833791 ASF1B (ANTI- SILENCING FUNCTION 1B) This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation. O.I. C.G. H.G.
19.4 99.6 18.4 At1g15480 838118 DNA binding F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB O.I. C.G. H.G.
19.3 99.6 73.5 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
19.3 99.6 49.8 At5g10240 830888 ASN3 (ASPARAGINE SYNTHETASE 3) Encodes asparagine synthetase (ASN3). O.I. C.G. H.G.
19.2 99.6 156.9 At3g02530 821160 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:membrane, cytoplasm;BOMFPA O.I. C.G. H.G.
19.1 99.6 126.0 At1g74030 843741 enolase, putative F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP O.I. C.G. H.G.
19.1 99.6 31.7 At2g18220 816337 - F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. C.G. H.G.
18.9 99.5 98.4 At3g11250 820296 60S acidic ribosomal protein P0 (RPP0C) F:structural constituent of ribosome;P:translational elongation, response to salt stress, translation;C:cytosolic ribosome, ribosome, membrane;MOFAPB O.I. C.G. H.G.
18.8 99.5 105.2 At3g55200 824686 splicing factor, putative F:nucleic acid binding;P:biological_process unknown;C:nucleus, chloroplast;MFOPB O.I. C.G. H.G.
18.8 99.5 41.1 At1g17560 838332 HLL (HUELLENLOS) Mutant shows abnormal ovule development O.I. C.G. H.G.
18.7 99.5 131.6 At4g24830 828586 arginosuccinate synthase family F:argininosuccinate synthase activity, ATP binding;P:arginine biosynthetic process;C:chloroplast stroma, chloroplast;OBMAFP O.I. C.G. H.G.
18.7 99.5 46.7 At4g23620 828462 50S ribosomal protein-related F:structural constituent of ribosome, 5S rRNA binding;P:translation;C:ribosome, intracellular;OBP O.I. C.G. H.G.
18.6 99.5 16.8 At4g36580 829810 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV O.I. C.G. H.G.
18.5 99.5 34.8 At3g11520 820325 CYCB1 Encodes a B-type mitotic cyclin. O.I. C.G. H.G.
18.4 99.5 20.9 At1g63250 842631 DEAD box RNA helicase, putative F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
18.3 99.5 172.7 At5g14800 831332 P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis. O.I. C.G. H.G.
18.2 99.5 126.3 At5g16070 831464 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
18.1 99.5 183.1 At1g20950 838689 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM O.I. C.G. H.G.
18.1 99.5 76.9 At4g25340 828637 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA O.I. C.G. H.G.
18.1 99.5 53.9 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA O.I. C.G. H.G.
18.1 99.5 28.4 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
17.9 99.5 102.1 At3g05060 819668 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein O.I. C.G. H.G.
17.9 99.5 40.6 At4g36680 829821 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMFA O.I. C.G. H.G.
17.9 99.5 29.4 At5g56220 835721 nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA O.I. C.G. H.G.
17.8 99.5 82.6 At1g23020 838910 FRO3 Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. O.I. C.G. H.G.
17.8 99.5 38.5 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
17.8 99.5 31.2 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF O.I. C.G. H.G.
17.8 99.5 27.4 At5g02820 831314 RHL2 (ROOT HAIRLESS 2) Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication O.I. C.G. H.G.
17.6 99.5 123.3 At5g67220 836857 nitrogen regulation family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process;C:mitochondrion;BOMFPA O.I. C.G. H.G.
17.4 99.5 34.9 At3g03420 821258 Ku70-binding family protein F:binding;P:unknown;C:cellular_component unknown;FMOP O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
80.5	99.9	38.8	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
61.6	99.8	31.8	At3g62760	825451	ATGSTF13	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
60.0	99.8	41.8	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
58.9	99.8	93.5	At3g56980	824865	BHLH039	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF	O.I.	C.G.	H.G.
57.5	99.8	146.5	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
56.2	99.8	48.7	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
55.4	99.8	115.3	At1g61580	842454	RPL3B (R-PROTEIN L3 B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV	O.I.	C.G.	H.G.
47.1	99.8	99.3	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
46.3	99.8	55.3	At3g12860	820468	nucleolar protein Nop56, putative	F:unknown;P:biological_process unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
44.2	99.8	94.7	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
36.5	99.7	131.7	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
36.1	99.7	107.5	At5g56500	835751	ATP binding / protein binding	F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAV	O.I.	C.G.	H.G.
35.1	99.7	66.4	At1g13730	837933	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBV	O.I.	C.G.	H.G.
33.9	99.7	83.3	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
32.8	99.7	134.2	At5g57990	835910	UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)	Encodes a ubiquitin-specific protease.	O.I.	C.G.	H.G.
32.7	99.7	30.4	At3g15240	820755	-	-	O.I.	C.G.	H.G.
30.6	99.7	46.9	At5g15980	831455	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF	O.I.	C.G.	H.G.
30.0	99.7	10.5	At2g16230	816120	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
29.9	99.7	79.6	At2g45730	819181	eukaryotic initiation factor 3 gamma subunit family protein	F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
29.7	99.7	109.9	At3g55010	824667	PUR5	encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)	O.I.	C.G.	H.G.
29.1	99.7	41.9	At1g06720	837182	-	F:unknown;P:ribosome biogenesis;C:nucleus;OMFBPVA	O.I.	C.G.	H.G.
27.9	99.7	15.1	At1g03840	839396	MGP (Magpie)	MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.	O.I.	C.G.	H.G.
27.3	99.7	302.0	At3g57150	824882	NAP57 (Arabidopsis thaliana homologue of NAP57)	Encodes a putative pseudouridine synthase (NAP57).	O.I.	C.G.	H.G.
26.9	99.7	224.7	At1g56110	842063	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	NOP56-like protein	O.I.	C.G.	H.G.
26.8	99.7	52.0	At1g02690	839517	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	C.G.	H.G.
26.5	99.7	264.8	At3g16780	820931	60S ribosomal protein L19 (RPL19B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP	O.I.	C.G.	H.G.
26.5	99.7	63.5	At5g57280	835833	methyltransferase	F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
26.5	99.7	31.8	At3g56990	824866	EDA7 (embryo sac development arrest 7)	F:molecular_function unknown;P:megagametogenesis;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOPBV	O.I.	C.G.	H.G.
26.3	99.7	295.3	At4g25630	828668	FIB2 (FIBRILLARIN 2)	encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.	O.I.	C.G.	H.G.
26.2	99.7	101.6	At1g80270	844367	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF	O.I.	C.G.	H.G.
26.2	99.7	80.9	At5g27120	832770	SAR DNA-binding protein, putative	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein	O.I.	C.G.	H.G.
25.5	99.7	157.2	At5g61030	836224	GR-RBP3 (glycine-rich RNA-binding protein 3)	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.	O.I.	C.G.	H.G.
25.5	99.7	64.6	At4g31810	829310	enoyl-CoA hydratase/isomerase family protein	F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
25.3	99.6	174.8	At3g20000	821538	TOM40	Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.	O.I.	C.G.	H.G.
25.2	99.6	58.7	At3g12270	820407	PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)	F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA	O.I.	C.G.	H.G.
25.1	99.6	43.7	At1g03110	839572	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA	O.I.	C.G.	H.G.
24.9	99.6	42.7	At5g59240	836042	40S ribosomal protein S8 (RPS8B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP	O.I.	C.G.	H.G.
24.8	99.6	113.0	At1g04870	839393	PRMT10	Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	O.I.	C.G.	H.G.
24.8	99.6	81.4	At4g30930	829217	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells).	O.I.	C.G.	H.G.
24.3	99.6	115.4	At3g13860	820599	HSP60-3A (HEAT SHOCK PROTEIN 60-3A)	F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
24.2	99.6	61.3	At5g05250	830407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
23.9	99.6	41.1	At3g26410	822245	methyltransferase/ nucleic acid binding	F:methyltransferase activity, nucleic acid binding;P:methylation;C:endomembrane system;MAFOPB	O.I.	C.G.	H.G.
23.4	99.6	211.4	At4g02930	828134	elongation factor Tu, putative / EF-Tu, putative	F:translation elongation factor activity, ATP binding;P:translational elongation;C:mitochondrion, cell wall;BOMFPAV	O.I.	C.G.	H.G.
23.4	99.6	9.0	At5g40320	834030	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
22.8	99.6	166.1	At3g19130	821447	ATRBP47B (RNA-binding protein 47B)	F:RNA binding;P:unknown;C:unknown;MOPFBAV	O.I.	C.G.	H.G.
22.0	99.6	121.6	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
21.9	99.6	28.6	At3g03060	821146	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV	O.I.	C.G.	H.G.
21.6	99.6	57.5	At2g18330	816348	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
21.5	99.6	93.3	At1g53645	841801	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
21.5	99.6	63.9	At3g13160	820505	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBA	O.I.	C.G.	H.G.
21.5	99.6	56.3	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.4	99.6	51.8	At2g39795	818565	mitochondrial glycoprotein family protein / MAM33 family protein	F:unknown;P:unknown;C:mitochondrion, mitochondrial matrix;PFOMB	O.I.	C.G.	H.G.
21.3	99.6	37.4	At1g13160	837874	SDA1 family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
21.3	99.6	21.9	At3g03680	821190	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA	O.I.	C.G.	H.G.
21.0	99.6	47.4	At1g73180	843652	eukaryotic translation initiation factor-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPB	O.I.	C.G.	H.G.
20.7	99.6	52.4	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
20.2	99.6	108.2	At1g64880	842796	ribosomal protein S5 family protein	F:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPV	O.I.	C.G.	H.G.
20.2	99.6	44.2	At5g16750	831538	TOZ (TORMOZEMBRYO DEFECTIVE)	Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.	O.I.	C.G.	H.G.
20.1	99.6	28.0	At5g54910	835582	DEAD/DEAH box helicase, putative	F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAV	O.I.	C.G.	H.G.
20.0	99.6	87.3	At4g38890	830044	dihydrouridine synthase family protein	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA	O.I.	C.G.	H.G.
20.0	99.6	36.0	At1g06560	837167	NOL1/NOP2/sun family protein	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;BOMAFP	O.I.	C.G.	H.G.
19.8	99.6	120.7	At2g25980	817139	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
19.7	99.6	99.3	At5g52820	835359	WD-40 repeat family protein / notchless protein, putative	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV	O.I.	C.G.	H.G.
19.7	99.6	67.1	At2g16570	816156	ATASE1 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1)	Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis	O.I.	C.G.	H.G.
19.7	99.6	35.3	At3g20430	821588	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
19.6	99.6	30.2	At1g04020	839329	BARD1 (BREAST CANCER ASSOCIATED RING 1)	Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein�protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.	O.I.	C.G.	H.G.
19.6	99.6	17.7	At3g03130	821080	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
19.4	99.6	205.9	At5g14520	831303	pescadillo-related	F:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOP	O.I.	C.G.	H.G.
19.4	99.6	171.3	At1g52060	841635	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOB	O.I.	C.G.	H.G.
19.4	99.6	52.0	At1g77550	844091	protein binding / tubulin-tyrosine ligase	F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
19.4	99.6	45.1	At5g38110	833791	ASF1B (ANTI- SILENCING FUNCTION 1B)	This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.	O.I.	C.G.	H.G.
19.4	99.6	18.4	At1g15480	838118	DNA binding	F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB	O.I.	C.G.	H.G.
19.3	99.6	73.5	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
19.3	99.6	49.8	At5g10240	830888	ASN3 (ASPARAGINE SYNTHETASE 3)	Encodes asparagine synthetase (ASN3).	O.I.	C.G.	H.G.
19.2	99.6	156.9	At3g02530	821160	chaperonin, putative	F:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:membrane, cytoplasm;BOMFPA	O.I.	C.G.	H.G.
19.1	99.6	126.0	At1g74030	843741	enolase, putative	F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP	O.I.	C.G.	H.G.
19.1	99.6	31.7	At2g18220	816337	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	O.I.	C.G.	H.G.
18.9	99.5	98.4	At3g11250	820296	60S acidic ribosomal protein P0 (RPP0C)	F:structural constituent of ribosome;P:translational elongation, response to salt stress, translation;C:cytosolic ribosome, ribosome, membrane;MOFAPB	O.I.	C.G.	H.G.
18.8	99.5	105.2	At3g55200	824686	splicing factor, putative	F:nucleic acid binding;P:biological_process unknown;C:nucleus, chloroplast;MFOPB	O.I.	C.G.	H.G.
18.8	99.5	41.1	At1g17560	838332	HLL (HUELLENLOS)	Mutant shows abnormal ovule development	O.I.	C.G.	H.G.
18.7	99.5	131.6	At4g24830	828586	arginosuccinate synthase family	F:argininosuccinate synthase activity, ATP binding;P:arginine biosynthetic process;C:chloroplast stroma, chloroplast;OBMAFP	O.I.	C.G.	H.G.
18.7	99.5	46.7	At4g23620	828462	50S ribosomal protein-related	F:structural constituent of ribosome, 5S rRNA binding;P:translation;C:ribosome, intracellular;OBP	O.I.	C.G.	H.G.
18.6	99.5	16.8	At4g36580	829810	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV	O.I.	C.G.	H.G.
18.5	99.5	34.8	At3g11520	820325	CYCB1	Encodes a B-type mitotic cyclin.	O.I.	C.G.	H.G.
18.4	99.5	20.9	At1g63250	842631	DEAD box RNA helicase, putative	F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
18.3	99.5	172.7	At5g14800	831332	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)	Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.	O.I.	C.G.	H.G.
18.2	99.5	126.3	At5g16070	831464	chaperonin, putative	F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
18.1	99.5	183.1	At1g20950	838689	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM	O.I.	C.G.	H.G.
18.1	99.5	76.9	At4g25340	828637	immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:nucleolus;MOBFPVA	O.I.	C.G.	H.G.
18.1	99.5	53.9	At3g11964	820370	RNA binding	F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA	O.I.	C.G.	H.G.
18.1	99.5	28.4	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
17.9	99.5	102.1	At3g05060	819668	SAR DNA-binding protein, putative	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein	O.I.	C.G.	H.G.
17.9	99.5	40.6	At4g36680	829821	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion;POMFA	O.I.	C.G.	H.G.
17.9	99.5	29.4	At5g56220	835721	nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, nucleotide binding;P:unknown;C:chloroplast;OPMBFVA	O.I.	C.G.	H.G.
17.8	99.5	82.6	At1g23020	838910	FRO3	Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.	O.I.	C.G.	H.G.
17.8	99.5	38.5	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
17.8	99.5	31.2	At2g34020	817963	calcium ion binding	F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF	O.I.	C.G.	H.G.
17.8	99.5	27.4	At5g02820	831314	RHL2 (ROOT HAIRLESS 2)	Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication	O.I.	C.G.	H.G.
17.6	99.5	123.3	At5g67220	836857	nitrogen regulation family protein	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
17.4	99.5	34.9	At3g03420	821258	Ku70-binding family protein	F:binding;P:unknown;C:cellular_component unknown;FMOP	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM265426
Assay name	Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1
GSE experiment	GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Microarray experiments to specifically-expressed genes

GSM ID GSM265426 Assay name Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1 GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

GSM ID GSM265426

Assay name Arabidopsis, root, longitudinal zone 1, -Fe conditions, rep 1

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment