Microarray experiments to specifically-expressed genes

GSM ID GSM265423
Assay name Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2
GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
831.8100.098.3At1g63450842651catalyticF:catalytic activity;P:unknown;C:membrane;POMO.I.C.G.H.G.
516.8100.0270.9At4g01630827983ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
389.5100.043.8At2g45890819197ROPGEF4 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4)Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.C.G.H.G.
335.7100.051.2At2g34180817979CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)Encodes CBL-interacting protein kinase 13 (CIPK13).O.I.C.G.H.G.
313.8100.0142.4At2g39040818490peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
306.6100.0108.9At1g53830841820ATPME2encodes a pectin methylesteraseO.I.C.G.H.G.
302.4100.087.9At4g31470829274pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
268.4100.064.0At5g15890831446unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMFOVBAO.I.C.G.H.G.
259.1100.040.3At3g19320821466leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
250.6100.0188.8At2g45750819183dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:unknown;PBOO.I.C.G.H.G.
240.3100.0152.0At4g15290827195ATCSLB05encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
236.9100.047.6At1g30850839969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
230.8100.0181.6At4g09990826590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
221.4100.051.1At1g08990837420PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5)F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:endomembrane system;PMFVBOO.I.C.G.H.G.
215.0100.062.1At4g01140828157unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
213.5100.0110.0At2g41970818797protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
213.5100.0109.5At1g05650837072polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
209.4100.0110.0At2g34910818056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
206.4100.0192.0At2g47540819367pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
194.7100.0136.1At5g49270834987SHV2 (SHAVEN 2)Involved in successfully establishing tip growth in root hairs.O.I.C.G.H.G.
191.5100.0160.8At3g18200821347nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;BOPAMFO.I.C.G.H.G.
189.7100.037.4At3g07070819893protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
178.8100.037.7At3g12540820433unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOAO.I.C.G.H.G.
176.6100.098.4At3g56230824789speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
174.0100.039.8At1g52660841698ATP bindingF:ATP binding;P:defense response, apoptosis;C:unknown;PBOAMO.I.C.G.H.G.
173.8100.0163.8At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOO.I.C.G.H.G.
163.299.938.5At5g24100832475leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
157.599.941.2At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOO.I.C.G.H.G.
150.799.981.1At1g53680841805ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
150.499.9237.2At3g43960823513cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAFO.I.C.G.H.G.
145.599.997.3At3g22540821825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
142.399.920.2At3g46400823790leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
140.399.9221.8At2g25810817123TIP4F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAO.I.C.G.H.G.
139.499.935.2At3g18450821374unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
131.699.9117.1At1g12560837813ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell.O.I.C.G.H.G.
131.399.945.7At3g63470825522scpl40 (serine carboxypeptidase-like 40)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
121.199.9173.7At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
118.699.937.7At4g29180829039leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
117.499.9128.7At1g01750839281ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)F:actin binding;P:biological_process unknown;C:intracellular;MPOFBO.I.C.G.H.G.
115.199.936.0At1g55290841974oxidoreductase, 2OG-Fe(II) oxygenase family proteinencodes a protein whose sequence is similar to oxidoreductase, 2OG-Fe(II) oxygenaseO.I.C.G.H.G.
115.099.976.1At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
111.699.9433.5At5g17820831650peroxidase 57 (PER57) (P57) (PRXR10)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, membrane, plant-type cell wall;PFOMO.I.C.G.H.G.
107.599.9155.1At1g30900839974vacuolar sorting receptor, putativeF:calcium ion binding;P:protein targeting to vacuole;C:integral to plasma membrane, Golgi transport complex;MOPBFAO.I.C.G.H.G.
104.799.9202.8At3g01720821091unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
101.199.940.9At3g29780822684RALFL27 (ralf-like 27)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.O.I.C.G.H.G.
98.699.984.8At2g21880816724ATRAB7AF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAO.I.C.G.H.G.
97.799.941.6At3g07900819981unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
97.399.920.2At1g48640841286lysine and histidine specific transporter, putativeF:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBAO.I.C.G.H.G.
95.699.934.6At2g29740817524UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2)F:quercetin 3'-O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
92.699.922.8At4g13440826976calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
92.299.926.1At3g21340821688leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
91.099.9283.7At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
89.799.913.2At1g16440838214kinaseF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MOPFBVAO.I.C.G.H.G.
88.999.936.1At4g25560828661AtMYB18 (myb domain protein 18)Member of the R2R3 factor gene family.O.I.C.G.H.G.
87.199.938.0At2g19060816423GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
86.299.954.1At1g08590837381CLAVATA1 receptor kinase (CLV1)similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888)O.I.C.G.H.G.
85.999.929.8At2g04680815011DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFO.I.C.G.H.G.
85.699.993.5At4g18430827574AtRABA1e (Arabidopsis Rab GTPase homolog A1e)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAVO.I.C.G.H.G.
84.799.9115.3At1g62980842601ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
83.199.9110.3At3g58710825040WRKY69member of WRKY Transcription Factor; Group II-eO.I.C.G.H.G.
82.799.931.9At3g56000824766ATCSLA14encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
82.399.9220.4At5g26740832714unknown proteinF:unknown;P:unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
79.199.945.6At2g44110819017MLO15 (MILDEW RESISTANCE LOCUS O 15)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO15 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root tips and flower (papillae, anthers and pollen grains), as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).O.I.C.G.H.G.
78.499.9103.9At5g13500831194unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
76.199.967.7At1g14220837983ribonuclease T2 family proteinF:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOVO.I.C.G.H.G.
75.999.988.5At4g31320829259auxin-responsive protein, putative / small auxin up RNA (SAUR_C)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
75.699.962.3At4g25250828628invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PMOO.I.C.G.H.G.
75.599.9239.0At1g67330843054unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.C.G.H.G.
75.099.937.0At1g27140839603ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
73.899.916.5At5g49870835050jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
70.699.946.7At1g30990839985major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
70.499.919.1At1g55430841990DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;POO.I.C.G.H.G.
69.999.9106.6At2g29750817525UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)F:quercetin 3'-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOVFO.I.C.G.H.G.
69.999.985.0At4g22460828341protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
69.099.9339.1At1g05260837028RCI3 (RARE COLD INDUCIBLE GENE 3)Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.O.I.C.G.H.G.
68.899.987.9At4g00680828037ADF8 (ACTIN DEPOLYMERIZING FACTOR 8)F:actin binding;P:biological_process unknown;C:intracellular;MPOFBO.I.C.G.H.G.
68.799.9122.3At1g08500837371plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
68.799.963.3At1g70230843359unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
68.799.920.1At5g65160836639tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPAO.I.C.G.H.G.
68.699.937.8At5g54020835485zinc ion bindingF:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOFO.I.C.G.H.G.
67.799.944.7At1g07795837294unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
66.999.816.6At4g26770828784phosphatidate cytidylyltransferase/ transferase, transferring phosphorus-containing groupsF:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFPO.I.C.G.H.G.
66.699.8130.6At5g54380835526THE1 (THESEUS1)F:protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
65.299.8167.4At4g171003770328unknown proteinF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
64.799.885.1At2g39110818497protein kinase, putativeF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
64.699.870.3At3g11320820304organic anion transmembrane transporterF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBAO.I.C.G.H.G.
62.399.877.6At5g51060835179RHD2 (ROOT HAIR DEFECTIVE 2)RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx.O.I.C.G.H.G.
62.299.846.3At2g18800816395XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
60.699.857.6At2g20750816604ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
60.599.830.0At1g69240843255MES15 (METHYL ESTERASE 15)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
60.399.846.9At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
59.199.842.9At2g40160818607-F:unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
58.999.886.3At3g05920819761heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PMOBVFAO.I.C.G.H.G.
57.999.835.2At4g17220827434ATMAP70-5 (microtubule-associated proteins 70-5)Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues.O.I.C.G.H.G.
57.399.845.7At1g15640838134unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
56.899.8281.4At3g17810821049dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family proteinF:oxidoreductase activity, acting on the CH-CH group of donors, catalytic activity, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity;P:'de novo' pyrimidine base biosynthetic process, UMP biosynthetic process, metabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
56.299.830.3At1g70460843382protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVAO.I.C.G.H.G.
56.099.8154.6At3g22570821829protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
54.499.818.6At5g61550836276protein kinase family proteinF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVAO.I.C.G.H.G.
54.399.8139.6At1g19900838578glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOO.I.C.G.H.G.



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