CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM265421

Assay name Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
100.3 99.9 73.7 At2g41810 818780 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.
71.5 99.9 57.1 At4g28650 828983 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
59.5 99.8 110.4 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
55.0 99.8 143.3 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
50.6 99.8 37.4 At2g43880 818992 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV O.I. C.G. H.G.
50.0 99.8 22.3 At2g43890 818993 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
44.9 99.8 103.8 At1g61580 842454 RPL3B (R-PROTEIN L3 B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV O.I. C.G. H.G.
42.6 99.8 23.1 At5g15150 831367 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem. O.I. C.G. H.G.
42.5 99.8 32.3 At5g45560 834592 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein F:lipid binding;P:unknown;C:mitochondrion;PMO O.I. C.G. H.G.
36.4 99.7 11.6 At2g16230 816120 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
36.2 99.7 59.1 At3g54770 824642 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
35.5 99.7 86.3 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
34.1 99.7 24.6 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.7 99.7 249.7 At1g20950 838689 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM O.I. C.G. H.G.
33.0 99.7 64.3 At1g13730 837933 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBV O.I. C.G. H.G.
32.2 99.7 90.9 At3g16950 820951 LPD1 (LIPOAMIDE DEHYDROGENASE 1) encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds. O.I. C.G. H.G.
32.1 99.7 89.4 At4g29680 829089 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV O.I. C.G. H.G.
31.3 99.7 78.7 At3g52940 824460 FK (FACKEL) Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo. O.I. C.G. H.G.
30.6 99.7 86.4 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB O.I. C.G. H.G.
29.5 99.7 97.6 At4g03190 828045 GRH1 (GRR1-LIKE PROTEIN 1) Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. O.I. C.G. H.G.
29.0 99.7 206.0 At2g33790 817946 AGP30 (ARABINOGALACTAN PROTEIN30) pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family O.I. C.G. H.G.
28.0 99.7 159.8 At1g76090 843941 SMT3 (STEROL METHYLTRANSFERASE 3) Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway. O.I. C.G. H.G.
27.7 99.7 26.8 At5g14150 831265 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBO O.I. C.G. H.G.
25.7 99.7 112.3 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV O.I. C.G. H.G.
25.6 99.7 87.6 At5g50375 835105 CPI1 (CYCLOPROPYL ISOMERASE) Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2 O.I. C.G. H.G.
25.4 99.6 97.1 At4g39660 830120 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2) alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA, O.I. C.G. H.G.
25.3 99.6 67.3 At3g24240 822011 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
24.8 99.6 108.3 At5g16510 831513 reversibly glycosylated polypeptide, putative F:transferase activity, transferring hexosyl groups;P:response to salt stress;C:Golgi apparatus, cell junction, plant-type cell wall;PABO O.I. C.G. H.G.
24.6 99.6 177.3 At1g12000 837752 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to cadmium ion, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane;BOPFMAV O.I. C.G. H.G.
24.4 99.6 141.7 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
24.2 99.6 86.5 At1g63050 842608 membrane bound O-acyl transferase (MBOAT) family protein F:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBP O.I. C.G. H.G.
23.7 99.6 132.0 At2g25980 817139 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
23.6 99.6 151.0 At3g17940 820642 aldose 1-epimerase family protein F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
23.5 99.6 55.8 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
23.1 99.6 138.5 At1g74030 843741 enolase, putative F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP O.I. C.G. H.G.
23.1 99.6 74.6 At2g17630 816270 phosphoserine aminotransferase, putative F:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPA O.I. C.G. H.G.
22.8 99.6 58.9 At4g17190 827430 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers. O.I. C.G. H.G.
22.7 99.6 13.3 At2g34180 817979 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) Encodes CBL-interacting protein kinase 13 (CIPK13). O.I. C.G. H.G.
22.2 99.6 28.5 At3g01220 821232 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity. O.I. C.G. H.G.
22.0 99.6 125.8 At5g65810 836710 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
21.9 99.6 240.6 At3g16780 820931 60S ribosomal protein L19 (RPL19B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP O.I. C.G. H.G.
21.9 99.6 38.3 At5g10170 830881 MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
21.4 99.6 18.4 At3g63470 825522 scpl40 (serine carboxypeptidase-like 40) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
21.3 99.6 137.7 At5g47770 834828 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) Encodes a protein with farnesyl diphosphate synthase activity. O.I. C.G. H.G.
21.1 99.6 91.4 At4g35850 829739 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:unknown;C:mitochondrion;POMFBA O.I. C.G. H.G.
21.0 99.6 89.1 At5g42420 834248 transporter-related F:unknown;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
21.0 99.6 50.5 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
21.0 99.6 41.8 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO O.I. C.G. H.G.
20.3 99.6 40.2 At3g16200 820866 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB O.I. C.G. H.G.
20.2 99.6 96.9 At1g05620 837068 URH2 (URIDINE-RIBOHYDROLASE 2) F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
20.1 99.6 37.1 At1g10130 837550 ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis. O.I. C.G. H.G.
20.1 99.6 17.7 At2g26360 817176 binding F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
20.0 99.6 11.1 At1g26700 839211 MLO14 (MILDEW RESISTANCE LOCUS O 14) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). O.I. C.G. H.G.
19.4 99.6 87.0 At2g38700 818452 MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer. O.I. C.G. H.G.
19.1 99.6 109.1 At2g34560 818020 katanin, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein metabolic process;C:unknown;OBMFPAV O.I. C.G. H.G.
19.1 99.6 88.0 At2g29390 817488 SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase. O.I. C.G. H.G.
19.1 99.6 14.6 At3g24210 822007 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
18.9 99.5 150.9 At3g20000 821538 TOM40 Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. O.I. C.G. H.G.
18.9 99.5 112.6 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P O.I. C.G. H.G.
18.8 99.5 51.6 At4g01630 827983 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
18.8 99.5 44.8 At3g14740 820702 PHD finger family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
18.5 99.5 33.2 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO O.I. C.G. H.G.
18.5 99.5 27.5 At4g36790 829832 transporter-related F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPV O.I. C.G. H.G.
18.4 99.5 70.7 At5g52180 835294 unknown protein F:unknown;P:unknown;C:endomembrane system;MPO O.I. C.G. H.G.
18.4 99.5 18.2 At2g24300 816966 calmodulin-binding protein F:calmodulin binding;P:biological_process unknown;C:unknown;PB O.I. C.G. H.G.
18.3 99.5 103.3 At2g40660 818661 tRNA-binding region domain-containing protein F:tRNA binding;P:tRNA aminoacylation for protein translation;C:unknown;BOMAFPV O.I. C.G. H.G.
18.3 99.5 96.6 At2g48020 819414 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, chloroplast, vacuole, membrane;BMFPOAV O.I. C.G. H.G.
18.3 99.5 76.5 At5g56500 835751 ATP binding / protein binding F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAV O.I. C.G. H.G.
18.2 99.5 61.7 At5g07110 830602 PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO O.I. C.G. H.G.
18.2 99.5 29.3 At3g57220 824889 UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative F:UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity;P:polysaccharide biosynthetic process;C:endoplasmic reticulum, plasma membrane;BOMAFP O.I. C.G. H.G.
18.0 99.5 6.4 At5g45200 834556 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
17.8 99.5 149.1 At3g54960 824661 ATPDIL1-3 (PDI-LIKE 1-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response. O.I. C.G. H.G.
17.8 99.5 99.0 At3g13860 820599 HSP60-3A (HEAT SHOCK PROTEIN 60-3A) F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAV O.I. C.G. H.G.
17.8 99.5 12.1 At1g03840 839396 MGP (Magpie) MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations. O.I. C.G. H.G.
17.7 99.5 76.5 At1g47250 841128 PAF2 Encodes 20S proteasome subunit PAF2 (PAF2). O.I. C.G. H.G.
17.7 99.5 29.0 At1g62330 842531 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.7 99.5 22.7 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
17.6 99.5 76.7 At3g44320 823557 NIT3 (NITRILASE 3) This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways. O.I. C.G. H.G.
17.3 99.5 37.0 At1g72730 843605 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cytosol, plasma membrane, plant-type cell wall;BOMFPAV O.I. C.G. H.G.
17.1 99.5 114.7 At1g35620 840461 ATPDIL5-2 (PDI-LIKE 5-2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants. O.I. C.G. H.G.
17.1 99.5 95.2 At3g17780 821046 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
17.0 99.5 63.4 At5g56040 835702 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
16.9 99.5 28.7 At5g19340 832054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV O.I. C.G. H.G.
16.8 99.5 49.8 At2g20515 816573 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
16.8 99.5 24.0 At4g22910 828390 FZR2 (FIZZY-RELATED 2) F:signal transducer activity;P:trichome branching, signal transduction, DNA endoreduplication, cell growth;C:chloroplast, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
16.6 99.5 90.2 At1g10030 837538 ERG28 (Arabidopsis homolog of yeast ergosterol28) F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO O.I. C.G. H.G.
16.4 99.5 32.8 At5g57700 835877 BNR/Asp-box repeat family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
16.4 99.5 17.5 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
16.2 99.5 141.9 At1g09330 837454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOP O.I. C.G. H.G.
16.2 99.5 74.8 At4g19030 827641 NLM1 an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance. O.I. C.G. H.G.
16.1 99.5 31.8 At3g59140 825083 ATMRP14 member of MRP subfamily O.I. C.G. H.G.
16.0 99.5 19.1 At5g53090 835389 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
16.0 99.5 17.8 At5g12970 831137 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF O.I. C.G. H.G.
16.0 99.5 9.3 At5g45210 834557 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMAF O.I. C.G. H.G.
15.8 99.5 119.0 At3g09300 820086 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP O.I. C.G. H.G.
15.8 99.5 100.3 At1g45130 841080 BGAL5 (beta-galactosidase 5) F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA O.I. C.G. H.G.
15.8 99.5 86.9 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, O.I. C.G. H.G.
15.7 99.5 172.2 At3g03160 821066 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.6 99.5 39.4 At1g71940 843525 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
15.5 99.5 49.9 At5g01320 830867 pyruvate decarboxylase, putative F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
100.3	99.9	73.7	At2g41810	818780	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.
71.5	99.9	57.1	At4g28650	828983	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
59.5	99.8	110.4	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
55.0	99.8	143.3	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
50.6	99.8	37.4	At2g43880	818992	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAV	O.I.	C.G.	H.G.
50.0	99.8	22.3	At2g43890	818993	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
44.9	99.8	103.8	At1g61580	842454	RPL3B (R-PROTEIN L3 B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV	O.I.	C.G.	H.G.
42.6	99.8	23.1	At5g15150	831367	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	homeobox-containing gene with an unusual feature: a leucine zipper motif adjacent to the carboxyl-terminal of the homeodomain structure. This gene is expressed primarily in the cortex of the root and the stem.	O.I.	C.G.	H.G.
42.5	99.8	32.3	At5g45560	834592	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	F:lipid binding;P:unknown;C:mitochondrion;PMO	O.I.	C.G.	H.G.
36.4	99.7	11.6	At2g16230	816120	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
36.2	99.7	59.1	At3g54770	824642	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
35.5	99.7	86.3	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
34.1	99.7	24.6	At5g62330	836354	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.7	99.7	249.7	At1g20950	838689	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM	O.I.	C.G.	H.G.
33.0	99.7	64.3	At1g13730	837933	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBV	O.I.	C.G.	H.G.
32.2	99.7	90.9	At3g16950	820951	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	O.I.	C.G.	H.G.
32.1	99.7	89.4	At4g29680	829089	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:vacuole;MBOFPAV	O.I.	C.G.	H.G.
31.3	99.7	78.7	At3g52940	824460	FK (FACKEL)	Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo.	O.I.	C.G.	H.G.
30.6	99.7	86.4	At1g57590	842135	carboxylesterase	F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB	O.I.	C.G.	H.G.
29.5	99.7	97.6	At4g03190	828045	GRH1 (GRR1-LIKE PROTEIN 1)	Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression.	O.I.	C.G.	H.G.
29.0	99.7	206.0	At2g33790	817946	AGP30 (ARABINOGALACTAN PROTEIN30)	pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family	O.I.	C.G.	H.G.
28.0	99.7	159.8	At1g76090	843941	SMT3 (STEROL METHYLTRANSFERASE 3)	Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.	O.I.	C.G.	H.G.
27.7	99.7	26.8	At5g14150	831265	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PBO	O.I.	C.G.	H.G.
25.7	99.7	112.3	At3g06460	819823	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV	O.I.	C.G.	H.G.
25.6	99.7	87.6	At5g50375	835105	CPI1 (CYCLOPROPYL ISOMERASE)	Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2	O.I.	C.G.	H.G.
25.4	99.6	97.1	At4g39660	830120	AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2)	alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA,	O.I.	C.G.	H.G.
25.3	99.6	67.3	At3g24240	822011	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
24.8	99.6	108.3	At5g16510	831513	reversibly glycosylated polypeptide, putative	F:transferase activity, transferring hexosyl groups;P:response to salt stress;C:Golgi apparatus, cell junction, plant-type cell wall;PABO	O.I.	C.G.	H.G.
24.6	99.6	177.3	At1g12000	837752	pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to cadmium ion, glycolysis;C:pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane;BOPFMAV	O.I.	C.G.	H.G.
24.4	99.6	141.7	At5g62340	836355	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
24.2	99.6	86.5	At1g63050	842608	membrane bound O-acyl transferase (MBOAT) family protein	F:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBP	O.I.	C.G.	H.G.
23.7	99.6	132.0	At2g25980	817139	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
23.6	99.6	151.0	At3g17940	820642	aldose 1-epimerase family protein	F:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
23.5	99.6	55.8	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
23.1	99.6	138.5	At1g74030	843741	enolase, putative	F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP	O.I.	C.G.	H.G.
23.1	99.6	74.6	At2g17630	816270	phosphoserine aminotransferase, putative	F:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPA	O.I.	C.G.	H.G.
22.8	99.6	58.9	At4g17190	827430	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.	O.I.	C.G.	H.G.
22.7	99.6	13.3	At2g34180	817979	CIPK13 (CBL-INTERACTING PROTEIN KINASE 13)	Encodes CBL-interacting protein kinase 13 (CIPK13).	O.I.	C.G.	H.G.
22.2	99.6	28.5	At3g01220	821232	ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)	Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.	O.I.	C.G.	H.G.
22.0	99.6	125.8	At5g65810	836710	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
21.9	99.6	240.6	At3g16780	820931	60S ribosomal protein L19 (RPL19B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP	O.I.	C.G.	H.G.
21.9	99.6	38.3	At5g10170	830881	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
21.4	99.6	18.4	At3g63470	825522	scpl40 (serine carboxypeptidase-like 40)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
21.3	99.6	137.7	At5g47770	834828	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	Encodes a protein with farnesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
21.1	99.6	91.4	At4g35850	829739	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:unknown;C:mitochondrion;POMFBA	O.I.	C.G.	H.G.
21.0	99.6	89.1	At5g42420	834248	transporter-related	F:unknown;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
21.0	99.6	50.5	At1g54890	841928	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
21.0	99.6	41.8	At5g48110	834863	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO	O.I.	C.G.	H.G.
20.3	99.6	40.2	At3g16200	820866	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB	O.I.	C.G.	H.G.
20.2	99.6	96.9	At1g05620	837068	URH2 (URIDINE-RIBOHYDROLASE 2)	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
20.1	99.6	37.1	At1g10130	837550	ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3)	Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis.	O.I.	C.G.	H.G.
20.1	99.6	17.7	At2g26360	817176	binding	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
20.0	99.6	11.1	At1g26700	839211	MLO14 (MILDEW RESISTANCE LOCUS O 14)	A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).	O.I.	C.G.	H.G.
19.4	99.6	87.0	At2g38700	818452	MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)	Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer.	O.I.	C.G.	H.G.
19.1	99.6	109.1	At2g34560	818020	katanin, putative	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein metabolic process;C:unknown;OBMFPAV	O.I.	C.G.	H.G.
19.1	99.6	88.0	At2g29390	817488	SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2)	Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase.	O.I.	C.G.	H.G.
19.1	99.6	14.6	At3g24210	822007	ankyrin repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
18.9	99.5	150.9	At3g20000	821538	TOM40	Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.	O.I.	C.G.	H.G.
18.9	99.5	112.6	At2g41800	818779	-	F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P	O.I.	C.G.	H.G.
18.8	99.5	51.6	At4g01630	827983	ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
18.8	99.5	44.8	At3g14740	820702	PHD finger family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
18.5	99.5	33.2	At1g31950	840085	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO	O.I.	C.G.	H.G.
18.5	99.5	27.5	At4g36790	829832	transporter-related	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
18.4	99.5	70.7	At5g52180	835294	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
18.4	99.5	18.2	At2g24300	816966	calmodulin-binding protein	F:calmodulin binding;P:biological_process unknown;C:unknown;PB	O.I.	C.G.	H.G.
18.3	99.5	103.3	At2g40660	818661	tRNA-binding region domain-containing protein	F:tRNA binding;P:tRNA aminoacylation for protein translation;C:unknown;BOMAFPV	O.I.	C.G.	H.G.
18.3	99.5	96.6	At2g48020	819414	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, chloroplast, vacuole, membrane;BMFPOAV	O.I.	C.G.	H.G.
18.3	99.5	76.5	At5g56500	835751	ATP binding / protein binding	F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAV	O.I.	C.G.	H.G.
18.2	99.5	61.7	At5g07110	830602	PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	O.I.	C.G.	H.G.
18.2	99.5	29.3	At3g57220	824889	UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative	F:UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity;P:polysaccharide biosynthetic process;C:endoplasmic reticulum, plasma membrane;BOMAFP	O.I.	C.G.	H.G.
18.0	99.5	6.4	At5g45200	834556	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
17.8	99.5	149.1	At3g54960	824661	ATPDIL1-3 (PDI-LIKE 1-3)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.	O.I.	C.G.	H.G.
17.8	99.5	99.0	At3g13860	820599	HSP60-3A (HEAT SHOCK PROTEIN 60-3A)	F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
17.8	99.5	12.1	At1g03840	839396	MGP (Magpie)	MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.	O.I.	C.G.	H.G.
17.7	99.5	76.5	At1g47250	841128	PAF2	Encodes 20S proteasome subunit PAF2 (PAF2).	O.I.	C.G.	H.G.
17.7	99.5	29.0	At1g62330	842531	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.7	99.5	22.7	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
17.6	99.5	76.7	At3g44320	823557	NIT3 (NITRILASE 3)	This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways.	O.I.	C.G.	H.G.
17.3	99.5	37.0	At1g72730	843605	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cytosol, plasma membrane, plant-type cell wall;BOMFPAV	O.I.	C.G.	H.G.
17.1	99.5	114.7	At1g35620	840461	ATPDIL5-2 (PDI-LIKE 5-2)	Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.	O.I.	C.G.	H.G.
17.1	99.5	95.2	At3g17780	821046	unknown protein	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.0	99.5	63.4	At5g56040	835702	leucine-rich repeat protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
16.9	99.5	28.7	At5g19340	832054	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBV	O.I.	C.G.	H.G.
16.8	99.5	49.8	At2g20515	816573	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
16.8	99.5	24.0	At4g22910	828390	FZR2 (FIZZY-RELATED 2)	F:signal transducer activity;P:trichome branching, signal transduction, DNA endoreduplication, cell growth;C:chloroplast, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
16.6	99.5	90.2	At1g10030	837538	ERG28 (Arabidopsis homolog of yeast ergosterol28)	F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPO	O.I.	C.G.	H.G.
16.4	99.5	32.8	At5g57700	835877	BNR/Asp-box repeat family protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
16.4	99.5	17.5	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
16.2	99.5	141.9	At1g09330	837454	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOP	O.I.	C.G.	H.G.
16.2	99.5	74.8	At4g19030	827641	NLM1	an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.	O.I.	C.G.	H.G.
16.1	99.5	31.8	At3g59140	825083	ATMRP14	member of MRP subfamily	O.I.	C.G.	H.G.
16.0	99.5	19.1	At5g53090	835389	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
16.0	99.5	17.8	At5g12970	831137	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
16.0	99.5	9.3	At5g45210	834557	disease resistance protein (TIR-NBS-LRR class), putative	F:protein binding, transmembrane receptor activity, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PBOMAF	O.I.	C.G.	H.G.
15.8	99.5	119.0	At3g09300	820086	ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)	F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP	O.I.	C.G.	H.G.
15.8	99.5	100.3	At1g45130	841080	BGAL5 (beta-galactosidase 5)	F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:endomembrane system, beta-galactosidase complex;BPMFOA	O.I.	C.G.	H.G.
15.8	99.5	86.9	At3g16440	820892	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	O.I.	C.G.	H.G.
15.7	99.5	172.2	At3g03160	821066	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.6	99.5	39.4	At1g71940	843525	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
15.5	99.5	49.9	At5g01320	830867	pyruvate decarboxylase, putative	F:in 6 functions;P:unknown;C:cellular_component unknown;BOFPAMV	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM265421
Assay name	Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2
GSE experiment	GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Microarray experiments to specifically-expressed genes

GSM ID GSM265421 Assay name Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

GSM ID GSM265421

Assay name Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment