CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM265418

Assay name Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
103.7 99.9 44.0 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. O.I. C.G. H.G.
94.8 99.9 52.6 At5g57980 835909 RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C) NRPB5-like protein of unknown function; homologous to budding yeast RPB5 O.I. C.G. H.G.
78.5 99.9 57.5 At5g48940 834952 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
62.1 99.8 122.1 At1g61580 842454 RPL3B (R-PROTEIN L3 B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV O.I. C.G. H.G.
57.1 99.8 30.6 At3g62760 825451 ATGSTF13 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
51.0 99.8 103.3 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
49.7 99.8 37.4 At3g15240 820755 - - O.I. C.G. H.G.
49.0 99.8 99.8 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
48.5 99.8 89.1 At4g31810 829310 enoyl-CoA hydratase/isomerase family protein F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA O.I. C.G. H.G.
45.7 99.8 12.5 At5g40320 834030 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM O.I. C.G. H.G.
44.1 99.8 19.0 At1g03840 839396 MGP (Magpie) MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations. O.I. C.G. H.G.
43.1 99.8 126.9 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
42.5 99.8 73.0 At1g13730 837933 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBV O.I. C.G. H.G.
40.6 99.8 39.3 At3g56990 824866 EDA7 (embryo sac development arrest 7) F:molecular_function unknown;P:megagametogenesis;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOPBV O.I. C.G. H.G.
39.5 99.8 137.1 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
38.6 99.8 62.1 At5g48240 834877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB O.I. C.G. H.G.
38.4 99.8 110.8 At5g56500 835751 ATP binding / protein binding F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAV O.I. C.G. H.G.
38.3 99.8 29.3 At3g03680 821190 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA O.I. C.G. H.G.
38.0 99.8 52.2 At5g15980 831455 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF O.I. C.G. H.G.
37.8 99.8 11.8 At2g16230 816120 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO O.I. C.G. H.G.
37.5 99.7 143.5 At3g13860 820599 HSP60-3A (HEAT SHOCK PROTEIN 60-3A) F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAV O.I. C.G. H.G.
34.9 99.7 99.0 At5g63660 836486 PDF2.5 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
34.8 99.7 26.3 At5g12970 831137 C2 domain-containing protein F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF O.I. C.G. H.G.
34.7 99.7 302.8 At3g16780 820931 60S ribosomal protein L19 (RPL19B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP O.I. C.G. H.G.
33.1 99.7 138.8 At2g40660 818661 tRNA-binding region domain-containing protein F:tRNA binding;P:tRNA aminoacylation for protein translation;C:unknown;BOMAFPV O.I. C.G. H.G.
32.9 99.7 138.1 At1g64880 842796 ribosomal protein S5 family protein F:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPV O.I. C.G. H.G.
32.4 99.7 34.8 At3g03060 821146 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV O.I. C.G. H.G.
32.1 99.7 78.0 At3g13160 820505 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBA O.I. C.G. H.G.
31.4 99.7 48.9 At1g03110 839572 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA O.I. C.G. H.G.
30.9 99.7 44.2 At3g20430 821588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
30.7 99.7 111.9 At3g55010 824667 PUR5 encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR) O.I. C.G. H.G.
30.7 99.7 50.4 At5g23300 832394 PYRD (pyrimidine d) dihydroorotate dehydrogenase, catalyses fourth step of pyrimidine biosynthesis O.I. C.G. H.G.
30.4 99.7 63.5 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV O.I. C.G. H.G.
30.3 99.7 80.9 At2g28600 817408 ATP binding / ATP-dependent helicase/ nucleic acid binding F:nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
30.1 99.7 79.8 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP O.I. C.G. H.G.
29.5 99.7 21.7 At3g03130 821080 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA O.I. C.G. H.G.
29.4 99.7 168.5 At5g61030 836224 GR-RBP3 (glycine-rich RNA-binding protein 3) encodes a glycine-rich RNA binding protein. Gene expression is induced by cold. O.I. C.G. H.G.
29.4 99.7 67.0 At2g18330 816348 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV O.I. C.G. H.G.
29.0 99.7 106.9 At1g80270 844367 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF O.I. C.G. H.G.
29.0 99.7 51.7 At4g36680 829821 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMFA O.I. C.G. H.G.
29.0 99.7 45.2 At3g26410 822245 methyltransferase/ nucleic acid binding F:methyltransferase activity, nucleic acid binding;P:methylation;C:endomembrane system;MAFOPB O.I. C.G. H.G.
29.0 99.7 41.6 At1g31950 840085 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO O.I. C.G. H.G.
28.8 99.7 186.5 At3g19130 821447 ATRBP47B (RNA-binding protein 47B) F:RNA binding;P:unknown;C:unknown;MOPFBAV O.I. C.G. H.G.
28.8 99.7 55.6 At1g73180 843652 eukaryotic translation initiation factor-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPB O.I. C.G. H.G.
28.8 99.7 43.9 At5g10170 830881 MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. O.I. C.G. H.G.
28.7 99.7 41.6 At5g45140 834550 NRPC2 Encodes a subunit of RNA polymerase III (aka RNA polymerase C). O.I. C.G. H.G.
28.5 99.7 77.6 At3g16310 820878 mitotic phosphoprotein N' end (MPPN) family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF O.I. C.G. H.G.
27.8 99.7 45.1 At5g59240 836042 40S ribosomal protein S8 (RPS8B) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP O.I. C.G. H.G.
27.6 99.7 32.7 At1g23100 838918 10 kDa chaperonin, putative F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV O.I. C.G. H.G.
27.5 99.7 42.5 At3g11520 820325 CYCB1 Encodes a B-type mitotic cyclin. O.I. C.G. H.G.
27.0 99.7 40.8 At2g25355 817074 exonuclease-related F:RNA binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MFOPA O.I. C.G. H.G.
26.9 99.7 299.6 At3g57150 824882 NAP57 (Arabidopsis thaliana homologue of NAP57) Encodes a putative pseudouridine synthase (NAP57). O.I. C.G. H.G.
26.7 99.7 80.5 At3g17465 821011 RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) encodes a putative L3 ribosomal protein targeted to the plastid. O.I. C.G. H.G.
26.4 99.7 62.8 At2g19670 816486 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA O.I. C.G. H.G.
26.1 99.7 183.8 At3g23940 821977 dehydratase family F:catalytic activity, dihydroxy-acid dehydratase activity;P:branched chain family amino acid biosynthetic process, isoleucine biosynthetic process, metabolic process, valine biosynthetic process;C:chloroplast stroma, chloroplast;OBFAPM O.I. C.G. H.G.
26.1 99.7 118.5 At2g35605 818127 SWIB complex BAF60b domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV O.I. C.G. H.G.
26.0 99.7 49.1 At2g28450 817393 zinc finger (CCCH-type) family protein F:methyltransferase activity, zinc ion binding, RNA methyltransferase activity, nucleic acid binding;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing;C:cellular_component unknown;BOMFAPV O.I. C.G. H.G.
25.9 99.7 129.6 At2g30000 817551 - F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
25.7 99.7 292.1 At4g25630 828668 FIB2 (FIBRILLARIN 2) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. O.I. C.G. H.G.
25.3 99.6 37.7 At4g37490 829904 CYCB1 Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. O.I. C.G. H.G.
25.2 99.6 114.1 At1g04870 839393 PRMT10 Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts. O.I. C.G. H.G.
25.2 99.6 40.8 At3g12860 820468 nucleolar protein Nop56, putative F:unknown;P:biological_process unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
25.1 99.6 67.1 At3g24240 822011 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
24.9 99.6 54.0 At4g23620 828462 50S ribosomal protein-related F:structural constituent of ribosome, 5S rRNA binding;P:translation;C:ribosome, intracellular;OBP O.I. C.G. H.G.
24.7 99.6 96.9 At4g38890 830044 dihydrouridine synthase family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA O.I. C.G. H.G.
24.5 99.6 37.8 At3g59670 825136 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
24.1 99.6 78.6 At3g16950 820951 LPD1 (LIPOAMIDE DEHYDROGENASE 1) encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds. O.I. C.G. H.G.
23.9 99.6 208.8 At2g33210 817883 HSP60-2 (HEAT SHOCK PROTEIN 60-2) F:ATP binding;P:response to salt stress, inflammatory response;C:mitochondrion, plasma membrane, chloroplast;BOMFPAV O.I. C.G. H.G.
23.8 99.6 62.3 At4g10750 826669 HpcH/HpaI aldolase family protein F:carbon-carbon lyase activity, catalytic activity;P:in 8 processes;C:mitochondrion, chloroplast;BOFPA O.I. C.G. H.G.
23.7 99.6 57.0 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA O.I. C.G. H.G.
23.5 99.6 50.7 At5g13520 831196 peptidase M1 family protein F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP O.I. C.G. H.G.
23.5 99.6 44.4 At4g11120 826713 translation elongation factor Ts (EF-Ts), putative F:translation elongation factor activity;P:translational elongation;C:mitochondrion;BOPMF O.I. C.G. H.G.
23.3 99.6 207.7 At1g20950 838689 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM O.I. C.G. H.G.
23.2 99.6 130.1 At1g63660 842670 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative F:catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding;P:in 6 processes;C:unknown;OBAFMP O.I. C.G. H.G.
23.1 99.6 224.7 At5g14520 831303 pescadillo-related F:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOP O.I. C.G. H.G.
23.1 99.6 35.6 At3g01160 820504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFBPVA O.I. C.G. H.G.
22.9 99.6 113.8 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. O.I. C.G. H.G.
22.7 99.6 56.3 At1g77550 844091 protein binding / tubulin-tyrosine ligase F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB O.I. C.G. H.G.
22.7 99.6 39.5 At1g03360 839521 ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4) F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP O.I. C.G. H.G.
22.6 99.6 106.4 At5g52820 835359 WD-40 repeat family protein / notchless protein, putative F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV O.I. C.G. H.G.
22.4 99.6 32.5 At4g21140 827862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
22.3 99.6 47.6 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. O.I. C.G. H.G.
22.0 99.6 109.9 At5g57990 835910 UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23) Encodes a ubiquitin-specific protease. O.I. C.G. H.G.
22.0 99.6 61.4 At5g51220 835197 ubiquinol-cytochrome C chaperone family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP O.I. C.G. H.G.
22.0 99.6 39.9 At3g60360 825207 EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) F:molecular_function unknown;P:megagametogenesis;C:small-subunit processome;MFOPAB O.I. C.G. H.G.
21.9 99.6 57.6 At3g63250 825500 HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds. O.I. C.G. H.G.
21.8 99.6 37.9 At1g13160 837874 SDA1 family protein F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA O.I. C.G. H.G.
21.7 99.6 92.8 At4g35850 829739 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:unknown;C:mitochondrion;POMFBA O.I. C.G. H.G.
21.7 99.6 39.1 At1g60850 842377 ATRPAC42 F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAP O.I. C.G. H.G.
21.6 99.6 30.3 At5g02820 831314 RHL2 (ROOT HAIRLESS 2) Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication O.I. C.G. H.G.
21.3 99.6 43.2 At3g60880 825259 dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) Encodes a dihydropicolinate synthase involved in lysine biosynthesis. The enzyme is allosterically inhibited by lysine. It is predicted to localize to the cholorplast. O.I. C.G. H.G.
21.2 99.6 34.1 At2g34020 817963 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF O.I. C.G. H.G.
21.1 99.6 65.7 At5g57090 835813 EIR1 (ETHYLENE INSENSITIVE ROOT 1) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity. O.I. C.G. H.G.
21.1 99.6 35.8 At3g52390 824404 tatD-related deoxyribonuclease family protein F:endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity;P:biological_process unknown;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
21.0 99.6 159.4 At3g20000 821538 TOM40 Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. O.I. C.G. H.G.
21.0 99.6 132.1 At1g74030 843741 enolase, putative F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP O.I. C.G. H.G.
21.0 99.6 96.8 At4g30800 829203 40S ribosomal protein S11 (RPS11B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP O.I. C.G. H.G.
21.0 99.6 82.6 At5g12410 831116 THUMP domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
21.0 99.6 19.2 At1g15480 838118 DNA binding F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB O.I. C.G. H.G.
20.9 99.6 33.6 At2g41810 818780 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
103.7	99.9	44.0	At2g23050	816835	NPY4 (NAKED PINS IN YUC MUTANTS 4)	A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.	O.I.	C.G.	H.G.
94.8	99.9	52.6	At5g57980	835909	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	NRPB5-like protein of unknown function; homologous to budding yeast RPB5	O.I.	C.G.	H.G.
78.5	99.9	57.5	At5g48940	834952	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
62.1	99.8	122.1	At1g61580	842454	RPL3B (R-PROTEIN L3 B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, membrane;BOMAPFV	O.I.	C.G.	H.G.
57.1	99.8	30.6	At3g62760	825451	ATGSTF13	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
51.0	99.8	103.3	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
49.7	99.8	37.4	At3g15240	820755	-	-	O.I.	C.G.	H.G.
49.0	99.8	99.8	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
48.5	99.8	89.1	At4g31810	829310	enoyl-CoA hydratase/isomerase family protein	F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA	O.I.	C.G.	H.G.
45.7	99.8	12.5	At5g40320	834030	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
44.1	99.8	19.0	At1g03840	839396	MGP (Magpie)	MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.	O.I.	C.G.	H.G.
43.1	99.8	126.9	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
42.5	99.8	73.0	At1g13730	837933	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MFPOBV	O.I.	C.G.	H.G.
40.6	99.8	39.3	At3g56990	824866	EDA7 (embryo sac development arrest 7)	F:molecular_function unknown;P:megagametogenesis;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOPBV	O.I.	C.G.	H.G.
39.5	99.8	137.1	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
38.6	99.8	62.1	At5g48240	834877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MOFPB	O.I.	C.G.	H.G.
38.4	99.8	110.8	At5g56500	835751	ATP binding / protein binding	F:protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:mitochondrion, chloroplast stroma, chloroplast, membrane;BOMFPAV	O.I.	C.G.	H.G.
38.3	99.8	29.3	At3g03680	821190	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFVA	O.I.	C.G.	H.G.
38.0	99.8	52.2	At5g15980	831455	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMBF	O.I.	C.G.	H.G.
37.8	99.8	11.8	At2g16230	816120	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO	O.I.	C.G.	H.G.
37.5	99.7	143.5	At3g13860	820599	HSP60-3A (HEAT SHOCK PROTEIN 60-3A)	F:protein binding, ATP binding;P:response to cadmium ion;C:mitochondrion, plasma membrane;BOMFPAV	O.I.	C.G.	H.G.
34.9	99.7	99.0	At5g63660	836486	PDF2.5	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
34.8	99.7	26.3	At5g12970	831137	C2 domain-containing protein	F:molecular_function unknown;P:tryptophan biosynthetic process;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
34.7	99.7	302.8	At3g16780	820931	60S ribosomal protein L19 (RPL19B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, plasma membrane;MAOFP	O.I.	C.G.	H.G.
33.1	99.7	138.8	At2g40660	818661	tRNA-binding region domain-containing protein	F:tRNA binding;P:tRNA aminoacylation for protein translation;C:unknown;BOMAFPV	O.I.	C.G.	H.G.
32.9	99.7	138.1	At1g64880	842796	ribosomal protein S5 family protein	F:structural constituent of ribosome, RNA binding;P:translation;C:ribosome, Golgi apparatus, intracellular;OBMFAPV	O.I.	C.G.	H.G.
32.4	99.7	34.8	At3g03060	821146	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:cell wall, plant-type cell wall;OMBFPAV	O.I.	C.G.	H.G.
32.1	99.7	78.0	At3g13160	820505	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion, membrane;POMFBA	O.I.	C.G.	H.G.
31.4	99.7	48.9	At1g03110	839572	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA	O.I.	C.G.	H.G.
30.9	99.7	44.2	At3g20430	821588	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
30.7	99.7	111.9	At3g55010	824667	PUR5	encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinamidine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)	O.I.	C.G.	H.G.
30.7	99.7	50.4	At5g23300	832394	PYRD (pyrimidine d)	dihydroorotate dehydrogenase, catalyses fourth step of pyrimidine biosynthesis	O.I.	C.G.	H.G.
30.4	99.7	63.5	At4g29690	829090	type I phosphodiesterase/nucleotide pyrophosphatase family protein	F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV	O.I.	C.G.	H.G.
30.3	99.7	80.9	At2g28600	817408	ATP binding / ATP-dependent helicase/ nucleic acid binding	F:nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
30.1	99.7	79.8	At2g45730	819181	eukaryotic initiation factor 3 gamma subunit family protein	F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
29.5	99.7	21.7	At3g03130	821080	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA	O.I.	C.G.	H.G.
29.4	99.7	168.5	At5g61030	836224	GR-RBP3 (glycine-rich RNA-binding protein 3)	encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.	O.I.	C.G.	H.G.
29.4	99.7	67.0	At2g18330	816348	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
29.0	99.7	106.9	At1g80270	844367	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMF	O.I.	C.G.	H.G.
29.0	99.7	51.7	At4g36680	829821	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion;POMFA	O.I.	C.G.	H.G.
29.0	99.7	45.2	At3g26410	822245	methyltransferase/ nucleic acid binding	F:methyltransferase activity, nucleic acid binding;P:methylation;C:endomembrane system;MAFOPB	O.I.	C.G.	H.G.
29.0	99.7	41.6	At1g31950	840085	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;PO	O.I.	C.G.	H.G.
28.8	99.7	186.5	At3g19130	821447	ATRBP47B (RNA-binding protein 47B)	F:RNA binding;P:unknown;C:unknown;MOPFBAV	O.I.	C.G.	H.G.
28.8	99.7	55.6	At1g73180	843652	eukaryotic translation initiation factor-related	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MFOPB	O.I.	C.G.	H.G.
28.8	99.7	43.9	At5g10170	830881	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	O.I.	C.G.	H.G.
28.7	99.7	41.6	At5g45140	834550	NRPC2	Encodes a subunit of RNA polymerase III (aka RNA polymerase C).	O.I.	C.G.	H.G.
28.5	99.7	77.6	At3g16310	820878	mitotic phosphoprotein N' end (MPPN) family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF	O.I.	C.G.	H.G.
27.8	99.7	45.1	At5g59240	836042	40S ribosomal protein S8 (RPS8B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MAOFP	O.I.	C.G.	H.G.
27.6	99.7	32.7	At1g23100	838918	10 kDa chaperonin, putative	F:ATP binding;P:protein folding;C:mitochondrion;BOMPFV	O.I.	C.G.	H.G.
27.5	99.7	42.5	At3g11520	820325	CYCB1	Encodes a B-type mitotic cyclin.	O.I.	C.G.	H.G.
27.0	99.7	40.8	At2g25355	817074	exonuclease-related	F:RNA binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MFOPA	O.I.	C.G.	H.G.
26.9	99.7	299.6	At3g57150	824882	NAP57 (Arabidopsis thaliana homologue of NAP57)	Encodes a putative pseudouridine synthase (NAP57).	O.I.	C.G.	H.G.
26.7	99.7	80.5	At3g17465	821011	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	encodes a putative L3 ribosomal protein targeted to the plastid.	O.I.	C.G.	H.G.
26.4	99.7	62.8	At2g19670	816486	PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A)	F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
26.1	99.7	183.8	At3g23940	821977	dehydratase family	F:catalytic activity, dihydroxy-acid dehydratase activity;P:branched chain family amino acid biosynthetic process, isoleucine biosynthetic process, metabolic process, valine biosynthetic process;C:chloroplast stroma, chloroplast;OBFAPM	O.I.	C.G.	H.G.
26.1	99.7	118.5	At2g35605	818127	SWIB complex BAF60b domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMV	O.I.	C.G.	H.G.
26.0	99.7	49.1	At2g28450	817393	zinc finger (CCCH-type) family protein	F:methyltransferase activity, zinc ion binding, RNA methyltransferase activity, nucleic acid binding;P:acetate biosynthetic process from carbon monoxide, methanol oxidation, RNA processing;C:cellular_component unknown;BOMFAPV	O.I.	C.G.	H.G.
25.9	99.7	129.6	At2g30000	817551	-	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
25.7	99.7	292.1	At4g25630	828668	FIB2 (FIBRILLARIN 2)	encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.	O.I.	C.G.	H.G.
25.3	99.6	37.7	At4g37490	829904	CYCB1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	O.I.	C.G.	H.G.
25.2	99.6	114.1	At1g04870	839393	PRMT10	Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.	O.I.	C.G.	H.G.
25.2	99.6	40.8	At3g12860	820468	nucleolar protein Nop56, putative	F:unknown;P:biological_process unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
25.1	99.6	67.1	At3g24240	822011	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
24.9	99.6	54.0	At4g23620	828462	50S ribosomal protein-related	F:structural constituent of ribosome, 5S rRNA binding;P:translation;C:ribosome, intracellular;OBP	O.I.	C.G.	H.G.
24.7	99.6	96.9	At4g38890	830044	dihydrouridine synthase family protein	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA	O.I.	C.G.	H.G.
24.5	99.6	37.8	At3g59670	825136	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
24.1	99.6	78.6	At3g16950	820951	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	O.I.	C.G.	H.G.
23.9	99.6	208.8	At2g33210	817883	HSP60-2 (HEAT SHOCK PROTEIN 60-2)	F:ATP binding;P:response to salt stress, inflammatory response;C:mitochondrion, plasma membrane, chloroplast;BOMFPAV	O.I.	C.G.	H.G.
23.8	99.6	62.3	At4g10750	826669	HpcH/HpaI aldolase family protein	F:carbon-carbon lyase activity, catalytic activity;P:in 8 processes;C:mitochondrion, chloroplast;BOFPA	O.I.	C.G.	H.G.
23.7	99.6	57.0	At3g12270	820407	PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)	F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA	O.I.	C.G.	H.G.
23.5	99.6	50.7	At5g13520	831196	peptidase M1 family protein	F:metallopeptidase activity, binding, zinc ion binding;P:proteolysis, leukotriene biosynthetic process;C:cellular_component unknown;BMOFAP	O.I.	C.G.	H.G.
23.5	99.6	44.4	At4g11120	826713	translation elongation factor Ts (EF-Ts), putative	F:translation elongation factor activity;P:translational elongation;C:mitochondrion;BOPMF	O.I.	C.G.	H.G.
23.3	99.6	207.7	At1g20950	838689	pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related	F:diphosphate-fructose-6-phosphate 1-phosphotransferase activity;P:response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus;C:pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex;BOPAM	O.I.	C.G.	H.G.
23.2	99.6	130.1	At1g63660	842670	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative	F:catalytic activity, GMP synthase (glutamine-hydrolyzing) activity, ATP binding;P:in 6 processes;C:unknown;OBAFMP	O.I.	C.G.	H.G.
23.1	99.6	224.7	At5g14520	831303	pescadillo-related	F:transcription coactivator activity;P:cell proliferation;C:nucleolus, intracellular;MFOP	O.I.	C.G.	H.G.
23.1	99.6	35.6	At3g01160	820504	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOFBPVA	O.I.	C.G.	H.G.
22.9	99.6	113.8	At4g32720	829408	AtLa1 (Arabidopsis thaliana La protein 1)	Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.	O.I.	C.G.	H.G.
22.7	99.6	56.3	At1g77550	844091	protein binding / tubulin-tyrosine ligase	F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
22.7	99.6	39.5	At1g03360	839521	ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4)	F:RNA binding, exonuclease activity;P:unknown;C:mitochondrion;OMAFP	O.I.	C.G.	H.G.
22.6	99.6	106.4	At5g52820	835359	WD-40 repeat family protein / notchless protein, putative	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MFOPBAV	O.I.	C.G.	H.G.
22.4	99.6	32.5	At4g21140	827862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
22.3	99.6	47.6	At1g02690	839517	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	O.I.	C.G.	H.G.
22.0	99.6	109.9	At5g57990	835910	UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23)	Encodes a ubiquitin-specific protease.	O.I.	C.G.	H.G.
22.0	99.6	61.4	At5g51220	835197	ubiquinol-cytochrome C chaperone family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP	O.I.	C.G.	H.G.
22.0	99.6	39.9	At3g60360	825207	EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14)	F:molecular_function unknown;P:megagametogenesis;C:small-subunit processome;MFOPAB	O.I.	C.G.	H.G.
21.9	99.6	57.6	At3g63250	825500	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.	O.I.	C.G.	H.G.
21.8	99.6	37.9	At1g13160	837874	SDA1 family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVA	O.I.	C.G.	H.G.
21.7	99.6	92.8	At4g35850	829739	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:unknown;C:mitochondrion;POMFBA	O.I.	C.G.	H.G.
21.7	99.6	39.1	At1g60850	842377	ATRPAC42	F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAP	O.I.	C.G.	H.G.
21.6	99.6	30.3	At5g02820	831314	RHL2 (ROOT HAIRLESS 2)	Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication	O.I.	C.G.	H.G.
21.3	99.6	43.2	At3g60880	825259	dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1)	Encodes a dihydropicolinate synthase involved in lysine biosynthesis. The enzyme is allosterically inhibited by lysine. It is predicted to localize to the cholorplast.	O.I.	C.G.	H.G.
21.2	99.6	34.1	At2g34020	817963	calcium ion binding	F:calcium ion binding;P:biological_process unknown;C:unknown;POMBF	O.I.	C.G.	H.G.
21.1	99.6	65.7	At5g57090	835813	EIR1 (ETHYLENE INSENSITIVE ROOT 1)	Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.	O.I.	C.G.	H.G.
21.1	99.6	35.8	At3g52390	824404	tatD-related deoxyribonuclease family protein	F:endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity;P:biological_process unknown;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
21.0	99.6	159.4	At3g20000	821538	TOM40	Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.	O.I.	C.G.	H.G.
21.0	99.6	132.1	At1g74030	843741	enolase, putative	F:phosphopyruvate hydratase activity;P:in 12 processes;C:phosphopyruvate hydratase complex, chloroplast;OBMFAP	O.I.	C.G.	H.G.
21.0	99.6	96.8	At4g30800	829203	40S ribosomal protein S11 (RPS11B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFP	O.I.	C.G.	H.G.
21.0	99.6	82.6	At5g12410	831116	THUMP domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
21.0	99.6	19.2	At1g15480	838118	DNA binding	F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB	O.I.	C.G.	H.G.
20.9	99.6	33.6	At2g41810	818780	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB	O.I.	C.G.	H.G.

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GSM ID	GSM265418
Assay name	Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1
GSE experiment	GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

Microarray experiments to specifically-expressed genes

GSM ID GSM265418 Assay name Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment

GSM ID GSM265418

Assay name Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1

GSE experiment GSE10497: Expression analysis of root developmental zones after iron deficiency (-Fe) treatment