Microarray experiments to specifically-expressed genes

GSM ID GSM265415
Assay name Arabidopsis, root cells, -Fe, replicate 2
GSE experiment GSE10496: Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
119.199.946.0At5g62330836354-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
118.099.9149.6At4g37160829870sks15 (SKU5 Similar 15)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
111.899.959.7At1g44318841025hemb2F:porphobilinogen synthase activity, catalytic activity, metal ion binding;P:porphyrin biosynthetic process;C:unknown;OBMFAPO.I.C.G.H.G.
100.099.9114.0At2g43600818962glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFVO.I.C.G.H.G.
95.399.9272.5At3g19430821477late embryogenesis abundant protein-related / LEA protein-relatedF:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVAO.I.C.G.H.G.
93.399.9261.5At1g50060841430pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
88.899.9360.4At2g33790817946AGP30 (ARABINOGALACTAN PROTEIN30)pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I familyO.I.C.G.H.G.
85.699.9129.9At4g27400828848late embryogenesis abundant protein-related / LEA protein-relatedF:unknown;P:response to salt stress;C:endomembrane system;PO.I.C.G.H.G.
75.099.9126.5At2g07708815383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
72.699.9244.6At5g62340836355invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
70.799.9326.9At1g52060841635-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
67.799.998.0At2g23630816895sks16 (SKU5 Similar 16)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
66.999.876.0At3g45700823712proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;PMBOFO.I.C.G.H.G.
66.199.819.0At1g50720841494stigma-specific Stig1 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFMO.I.C.G.H.G.
64.899.8218.3At2g25980817139jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
64.199.8126.2At5g35940833584jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBMO.I.C.G.H.G.
63.999.843.0At3g59370825106unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAO.I.C.G.H.G.
60.099.829.2At5g43030834318DC1 domain-containing proteinF:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
59.999.8426.1At5g54370835525late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
58.299.8279.1At1g52050841634jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
57.499.8104.9At3g04320819587endopeptidase inhibitorF:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
56.799.8103.2At1g65570842868polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAO.I.C.G.H.G.
54.999.8186.2At1g22880838893CEL5 (CELLULASE 5)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOFO.I.C.G.H.G.
51.799.898.6At5g58784835994dehydrodolichyl diphosphate synthaseF:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMPO.I.C.G.H.G.
50.599.854.9At1g31950840085terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:membrane;POO.I.C.G.H.G.
50.499.8297.1At1g52070841636jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOBO.I.C.G.H.G.
47.999.864.8At4g11210826723disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
47.999.816.7At1g73780843713protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
45.499.8137.6At3g27200822339plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBMFO.I.C.G.H.G.
44.999.8154.2At5g10130830877pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;PO.I.C.G.H.G.
43.199.835.3At1g23160838924auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:unknown;OPBMFO.I.C.G.H.G.
42.999.864.3At3g54770824642RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:cellular_component unknown;MPFOBO.I.C.G.H.G.
42.699.8268.2At4g23690828469disease resistance-responsive family protein / dirigent family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
42.199.838.0At2g18800816395XTH21 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21)F:hydrolase activity, acting on glycosyl bonds, xyloglucan endotransglucosylase activity;P:primary root development, cell wall modification;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
41.199.832.8At1g33280840223ANAC015 (Arabidopsis NAC domain containing protein 15)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
40.499.839.4At4g23590828459aminotransferase class I and II family proteinF:1-aminocyclopropane-1-carboxylate synthase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, transaminase activity, catalytic activity;P:cellular amino acid and derivative metabolic process, biosynthetic process;C:cellular_component unknown;BOPMAFO.I.C.G.H.G.
39.699.824.9At2g04500814991DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POMO.I.C.G.H.G.
39.199.838.5At4g14940827152ATAO1 (ARABIDOPSIS THALIANA AMINE OXIDASE 1)atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development.O.I.C.G.H.G.
38.499.870.0At2g077163768419-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
37.899.8443.3At5g56540835755AGP14 (ARABINOGALACTAN PROTEIN 14)Encodes arabinogalactan protein (AGP14).O.I.C.G.H.G.
37.799.744.2At1g14080837968FUT6 (FUCOSYLTRANSFERASE 6)member of Xyloglucan fucosyltransferase familyO.I.C.G.H.G.
36.199.7102.2At5g66280836760GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1)GDP-D-mannose 4,6-dehydrataseO.I.C.G.H.G.
35.499.7301.9At2g43610818963glycoside hydrolase family 19 proteinF:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVMO.I.C.G.H.G.
32.999.769.9At3g56980824865BHLH039F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO.I.C.G.H.G.
32.799.739.7At4g37400829894CYP81F3member of CYP81FO.I.C.G.H.G.
32.399.787.2At5g60520836173late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
32.199.750.7At5g47950834846transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
31.999.753.2At1g23760838987JP630Encodes aromatic rich glycoprotein JP630.O.I.C.G.H.G.
31.299.737.8At2g21610816699pectinesterase family proteinF:pectinesterase activity;P:N-terminal protein myristoylation, cell wall modification;C:cell wall, plant-type cell wall;PBFAMOO.I.C.G.H.G.
30.199.722.3At5g51520835226invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
29.699.729.7At1g07290837240nucleotide-sugar transmembrane transporterF:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
28.899.7139.2At2g41800818779-F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PO.I.C.G.H.G.
28.399.7130.5At5g12940831134leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMOBFAO.I.C.G.H.G.
27.799.7148.3At4g26320828738AGP13 (arabinogalactan protein 13)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
27.599.740.7At1g14220837983ribonuclease T2 family proteinF:ribonuclease T2 activity, endoribonuclease activity, RNA binding;P:N-terminal protein myristoylation;C:endomembrane system;PBFMOVO.I.C.G.H.G.
26.699.774.5At5g07110830602PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOO.I.C.G.H.G.
26.499.751.8At1g53180841752unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
26.299.715.9At2g31085817664CLE6 (CLAVATA3/ESR-RELATED 6)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.O.I.C.G.H.G.
25.999.751.7At4g31320829259auxin-responsive protein, putative / small auxin up RNA (SAUR_C)F:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POO.I.C.G.H.G.
25.899.7104.0At3g49190824080condensation domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAFO.I.C.G.H.G.
25.699.7112.1At3g06460819823GNS1/SUR4 membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPVO.I.C.G.H.G.
25.099.671.5At5g57090835813EIR1 (ETHYLENE INSENSITIVE ROOT 1)Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.O.I.C.G.H.G.
24.699.655.2At4g37250829879leucine-rich repeat family protein / protein kinase family proteinF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
24.299.676.9At5g01890831677leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
24.199.629.6At3g01220821232ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein, its expression is auxin-inducible and dependent on MP gene activity.O.I.C.G.H.G.
23.799.660.1At4g17190827430FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers.O.I.C.G.H.G.
23.299.631.0At5g14750831327ATMYB66 (MYB DOMAIN PROTEIN 66)Encodes a MyB-related protein containing R2 and R3 repeats, involved in root and hypocotyl epidermal cell fate determination. Loss of function mutations make extra root hairs. Nuclear localized protein is a positive regulator for expression of CAPRICE (CPC).O.I.C.G.H.G.
23.099.655.2At4g29690829090type I phosphodiesterase/nucleotide pyrophosphatase family proteinF:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAVO.I.C.G.H.G.
22.999.687.1At1g52910841724unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.799.68.9At4g35200829673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
22.699.622.4At2g30340817584LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13)F:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFVBAO.I.C.G.H.G.
22.399.639.6At5g57500835854transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;PMOFO.I.C.G.H.G.
22.399.616.6At1g77020844038DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
21.899.626.8At1g53700841807WAG1 (WAG 1)The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons.O.I.C.G.H.G.
21.499.626.0At5g03960830275IQD12 (IQ-domain 12)F:calmodulin binding;P:biological_process unknown;C:unknown;PBFOO.I.C.G.H.G.
21.399.6230.1At5g60530836174late embryogenesis abundant protein-related / LEA protein-relatedF:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVAO.I.C.G.H.G.
21.399.663.1At1g52280841658AtRABG3d (Arabidopsis Rab GTPase homolog G3d)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, vacuole;MOFPBAVO.I.C.G.H.G.
20.999.675.0At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
19.999.646.6At1g54120841852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
19.799.655.3At5g05250830407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
19.699.619.7At5g10720830938AHK5 (ARABIDOPSIS HISTIDINE KINASE 5)member of Histidine KinaseO.I.C.G.H.G.
19.599.632.0At1g22335--O.I.C.G.H.G.
19.299.629.2At1g36060840510AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.O.I.C.G.H.G.
19.099.517.5At2g43480818949peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
18.899.56.3At1g43040840903auxin-responsive protein, putativeF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
18.599.5204.4At2g04780815021FLA7 (FASCICLIN-LIKE ARABINOOGALACTAN 7)fasciclin-like arabinogalactan-protein 7 (Fla7)O.I.C.G.H.G.
18.499.5202.4At5g53250835406AGP22 (ARABINOGALACTAN PROTEIN 22)F:unknown;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
18.499.521.4At5g51470835221auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMFO.I.C.G.H.G.
18.499.512.1At3g20960821646CYP705A33member of CYP705AO.I.C.G.H.G.
18.399.5132.9At3g17940820642aldose 1-epimerase family proteinF:isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
18.199.532.1At5g04970830379pectinesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVAO.I.C.G.H.G.
18.199.530.3At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.C.G.H.G.
17.799.578.1At4g19030827641NLM1an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Also functions in arsenite transport and tolerance.O.I.C.G.H.G.
17.299.5324.7At4g12510826863protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
17.299.527.6At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
17.299.523.0At1g18140838393LAC1 (Laccase 1)putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).O.I.C.G.H.G.
17.199.521.7At2g43880818992polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVO.I.C.G.H.G.
16.999.526.1At3g14530820678geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putativeF:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:chloroplast;OBFPMAVO.I.C.G.H.G.
16.999.521.6At3g05390819703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABOO.I.C.G.H.G.
16.799.5237.6At5g05410830424DREB2AEncodes a transcription factor that specifically binds to DRE/CRT cis elements (responsive to drought and low-temperature stress). Belongs to the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2A). There are eight members in this subfamily including DREB2B. The protein contains one AP2 domain. Overexpression of transcriptional activation domain of DREB2A resulted in significant drought stress tolerance but only slight freezing tolerance in transgenic Arabidopsis plants. Microarray and RNA gel blot analyses revealed that DREB2A regulates expression of many water stress–inducible genes.O.I.C.G.H.G.



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