CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM262009

Assay name IAC165, 11 days after infection with S. hermonthica, biological replicate #2

GSE experiment GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
96.6 100.0 29.2 Os04g0188600 CB964566 - - 3e+0 At3g55290 short-chain dehydrogenase/reductase (SDR) family protein O.I. C.G. H.G.
57.1 99.9 8.3 Os01g0612500 AK111393.1 - Phospholipase/Carboxylesterase family protein 3e+0 At5g06290 2-Cys Prx B (2-Cysteine peroxiredoxin B) O.I. C.G. H.G.
42.0 99.9 4.3 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein O.I. C.G. H.G.
38.4 99.8 29.3 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. C.G. H.G.
34.0 99.8 86.4 Os02g0184900 AK100832.1 - Cytochrome P450 family protein 5e-2 At3g44250 CYP71B38 O.I. C.G. H.G.
33.5 99.8 281.4 Os04g0521100 9632.m04226 - Plasma membrane intrinsic protein (Aquaporin) 1e-42 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) O.I. C.G. H.G.
31.1 99.7 11.8 Os01g0704100 AK109776.1 - - 2e-5 At1g12940 ATNRT2.5 (nitrate transporter2.5) O.I. C.G. H.G.
29.5 99.7 18.9 Os05g0493800 AK110589.1 - MtN21 nodulin protein-like 6e-11 At5g07050 - O.I. C.G. H.G.
27.9 99.6 3.2 Os10g0516900 AK107070.1 - Conserved hypothetical protein 6e+0 At4g33130 - O.I. C.G. H.G.
27.6 99.6 52.3 Os02g0588700 AK100801.1 - Conserved hypothetical protein 2e+0 At3g60110 DNA binding O.I. C.G. H.G.
24.5 99.4 2.3 Os04g0508500 AK109620.1 - Snapdragon myb protein 305 homolog 5e-8 At3g24310 MYB305 (myb domain protein 305) O.I. C.G. H.G.
24.2 99.4 3.6 Os12g0632900 AK071957.1 - Receptor protein kinase 3e-5 At5g49660 leucine-rich repeat transmembrane protein kinase, putative O.I. C.G. H.G.
23.9 99.4 310.8 Os05g0114700 AK111634.1 - Myb, DNA-binding domain containing protein 7e-5 At4g38620 MYB4 O.I. C.G. H.G.
23.9 99.4 0.4 Os02g0291400 9630.m01799 - - 4e-4 At4g33000 CBL10 (CALCINEURIN B-LIKE 10) O.I. C.G. H.G.
23.7 99.4 58.1 Os04g0188500 9632.m00978 - Hypothetical protein 6e-1 At2g18870 VEL3 (VERNALIZATION5/VIN3-LIKE) O.I. C.G. H.G.
23.3 99.4 3.6 Os03g0238300 AK059494.1 - Endonuclease/exonuclease/phosphatase familyprotein 4e+0 At4g27170 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 O.I. C.G. H.G.
22.7 99.3 26.0 Os11g0700500 AK111626.1 - Myb, DNA-binding domain containing protein 1e-8 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) O.I. C.G. H.G.
22.7 99.3 7.6 Os06g0717200 AK111824.1 - Leucine-rich repeat/receptor protein kinaseprecursor 7e-12 At3g49670 BAM2 (BARELY ANY MERISTEM 2) O.I. C.G. H.G.
22.4 99.3 6.2 Os08g0267900 AK107040.1 - Conserved hypothetical protein 3e-2 At1g76820 GTP binding / GTPase O.I. C.G. H.G.
21.8 99.2 45.4 Os02g0584200 AU101647 - Conserved hypothetical protein 8e+0 At2g14070 wound-responsive protein-related O.I. C.G. H.G.
21.8 99.2 9.3 Os12g0567300 AK107214.1 - Snapdragon myb protein 305 homolog 5e-14 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) O.I. C.G. H.G.
21.6 99.2 1.4 Os02g0620500 9630.m03934 - High affinity ammonium transporter 3e-19 At1g64780 ATAMT1 O.I. C.G. H.G.
21.1 99.2 2.5 Os01g0937200 AK121597.1 - Peptidase aspartic family protein 2e-1 At3g57785 unknown protein O.I. C.G. H.G.
20.2 99.1 4.2 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein O.I. C.G. H.G.
19.1 99.0 24.3 Os04g0208200 CB624786 - Cysteine proteinase 8e-2 At1g29090 peptidase C1A papain family protein O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
96.6	100.0	29.2	Os04g0188600	CB964566	-	-	3e+0	At3g55290	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	C.G.	H.G.
57.1	99.9	8.3	Os01g0612500	AK111393.1	-	Phospholipase/Carboxylesterase family protein	3e+0	At5g06290	2-Cys Prx B (2-Cysteine peroxiredoxin B)	O.I.	C.G.	H.G.
42.0	99.9	4.3	Os01g0307500	AK108663.1	-	Cation transporter family protein	1e+0	At3g02670	proline-rich family protein	O.I.	C.G.	H.G.
38.4	99.8	29.3	Os04g0189012	9632.m00980	-	-	2e+0	At5g13910	LEP (LEAFY PETIOLE)	O.I.	C.G.	H.G.
34.0	99.8	86.4	Os02g0184900	AK100832.1	-	Cytochrome P450 family protein	5e-2	At3g44250	CYP71B38	O.I.	C.G.	H.G.
33.5	99.8	281.4	Os04g0521100	9632.m04226	-	Plasma membrane intrinsic protein (Aquaporin)	1e-42	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	C.G.	H.G.
31.1	99.7	11.8	Os01g0704100	AK109776.1	-	-	2e-5	At1g12940	ATNRT2.5 (nitrate transporter2.5)	O.I.	C.G.	H.G.
29.5	99.7	18.9	Os05g0493800	AK110589.1	-	MtN21 nodulin protein-like	6e-11	At5g07050	-	O.I.	C.G.	H.G.
27.9	99.6	3.2	Os10g0516900	AK107070.1	-	Conserved hypothetical protein	6e+0	At4g33130	-	O.I.	C.G.	H.G.
27.6	99.6	52.3	Os02g0588700	AK100801.1	-	Conserved hypothetical protein	2e+0	At3g60110	DNA binding	O.I.	C.G.	H.G.
24.5	99.4	2.3	Os04g0508500	AK109620.1	-	Snapdragon myb protein 305 homolog	5e-8	At3g24310	MYB305 (myb domain protein 305)	O.I.	C.G.	H.G.
24.2	99.4	3.6	Os12g0632900	AK071957.1	-	Receptor protein kinase	3e-5	At5g49660	leucine-rich repeat transmembrane protein kinase, putative	O.I.	C.G.	H.G.
23.9	99.4	310.8	Os05g0114700	AK111634.1	-	Myb, DNA-binding domain containing protein	7e-5	At4g38620	MYB4	O.I.	C.G.	H.G.
23.9	99.4	0.4	Os02g0291400	9630.m01799	-	-	4e-4	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	C.G.	H.G.
23.7	99.4	58.1	Os04g0188500	9632.m00978	-	Hypothetical protein	6e-1	At2g18870	VEL3 (VERNALIZATION5/VIN3-LIKE)	O.I.	C.G.	H.G.
23.3	99.4	3.6	Os03g0238300	AK059494.1	-	Endonuclease/exonuclease/phosphatase familyprotein	4e+0	At4g27170	2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4	O.I.	C.G.	H.G.
22.7	99.3	26.0	Os11g0700500	AK111626.1	-	Myb, DNA-binding domain containing protein	1e-8	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	O.I.	C.G.	H.G.
22.7	99.3	7.6	Os06g0717200	AK111824.1	-	Leucine-rich repeat/receptor protein kinaseprecursor	7e-12	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	C.G.	H.G.
22.4	99.3	6.2	Os08g0267900	AK107040.1	-	Conserved hypothetical protein	3e-2	At1g76820	GTP binding / GTPase	O.I.	C.G.	H.G.
21.8	99.2	45.4	Os02g0584200	AU101647	-	Conserved hypothetical protein	8e+0	At2g14070	wound-responsive protein-related	O.I.	C.G.	H.G.
21.8	99.2	9.3	Os12g0567300	AK107214.1	-	Snapdragon myb protein 305 homolog	5e-14	At3g46130	MYB111 (MYB DOMAIN PROTEIN 111)	O.I.	C.G.	H.G.
21.6	99.2	1.4	Os02g0620500	9630.m03934	-	High affinity ammonium transporter	3e-19	At1g64780	ATAMT1	O.I.	C.G.	H.G.
21.1	99.2	2.5	Os01g0937200	AK121597.1	-	Peptidase aspartic family protein	2e-1	At3g57785	unknown protein	O.I.	C.G.	H.G.
20.2	99.1	4.2	Os01g0297200	AK109883.1	-	AAA ATPase, central region domain containingprotein	6e-5	At4g25835	AAA-type ATPase family protein	O.I.	C.G.	H.G.
19.1	99.0	24.3	Os04g0208200	CB624786	-	Cysteine proteinase	8e-2	At1g29090	peptidase C1A papain family protein	O.I.	C.G.	H.G.

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GSM ID	GSM262009
Assay name	IAC165, 11 days after infection with S. hermonthica, biological replicate #2
GSE experiment	GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

Microarray experiments to specifically-expressed genes

GSM ID GSM262009 Assay name IAC165, 11 days after infection with S. hermonthica, biological replicate #2 GSE experiment GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

GSM ID GSM262009

Assay name IAC165, 11 days after infection with S. hermonthica, biological replicate #2

GSE experiment GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica