CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM262000

Assay name IAC165, 2 days after infection with S. hermonthica, biological replicate #1

GSE experiment GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description Ev AGI code Arabidopsis gene name O.I. C.G. H.G. Other DB
67.5 99.9 28.3 Os05g0399400 L37289.1 - Chitinase (EC 3.2.1.14) 4e-2 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. C.G. H.G.
38.9 99.8 5.1 Os05g0515500 AK068905.1 - O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 7e-1 At1g53625 unknown protein O.I. C.G. H.G.
38.8 99.8 47.1 Os05g0226900 AF337054.1 - Conserved hypothetical protein 3e-3 At2g43970 La domain-containing protein O.I. C.G. H.G.
35.5 99.8 23.5 Os06g0302000 AK106070.1 - Hypothetical protein 3e+0 At1g06475 unknown protein O.I. C.G. H.G.
30.7 99.7 5.4 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein O.I. C.G. H.G.
27.4 99.6 3.7 Os09g0422500 AK121170.1 - Cellulose synthase 3e-33 At5g17420 IRX3 (IRREGULAR XYLEM 3) O.I. C.G. H.G.
27.3 99.6 37.1 Os02g0651900 AK102949.1 - Conserved hypothetical protein 5e-1 At5g19800 hydroxyproline-rich glycoprotein family protein O.I. C.G. H.G.
26.9 99.6 18.6 Os03g0273200 AK072397.1 - Laccase (EC 1.10.3.2) 7e-5 At2g38080 IRX12 (IRREGULAR XYLEM 12) O.I. C.G. H.G.
26.1 99.5 8.0 Os03g0637600 AK105732.1 - Extensin protein-like 2e-1 At3g24480 leucine-rich repeat family protein / extensin family protein O.I. C.G. H.G.
24.1 99.4 202.4 Os04g0521100 9632.m04226 - Plasma membrane intrinsic protein (Aquaporin) 1e-42 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) O.I. C.G. H.G.
24.1 99.4 2.2 Os07g0640300 9639.m04076 - Nucleic acid-binding OB-fold domain containingprotein 6e-1 At4g10780 disease resistance protein (CC-NBS-LRR class), putative O.I. C.G. H.G.
22.0 99.3 1.5 Os04g0512300 AK071791.1 - Conserved hypothetical protein 8e-1 At1g09157 unknown protein O.I. C.G. H.G.
21.2 99.2 20.9 Os06g0106800 AK122178.1 - Conserved hypothetical protein 2e-1 At3g61490 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein O.I. C.G. H.G.
20.8 99.2 0.5 Os03g0294100 9631.m01800 - Conserved hypothetical protein 2e-1 At1g07120 - O.I. C.G. H.G.
20.7 99.2 26.8 Os10g0569600 BQ529575 - RIR1b protein precursor 1e+0 At2g25344 LCR14 (Low-molecular-weight cysteine-rich 14) O.I. C.G. H.G.
20.5 99.1 13.4 Os07g0418700 AK105945.1 - Conserved hypothetical protein 2e+0 At5g22950 VPS24.1 O.I. C.G. H.G.
20.0 99.1 42.1 Os11g0306400 AK106179.1 - O-methyltransferase, family 2 domain containingprotein 2e-1 At3g16190 isochorismatase hydrolase family protein O.I. C.G. H.G.
19.8 99.1 0.3 Os09g0316000 9637.m01182 - Conserved hypothetical protein 2e+0 At3g58670 unknown protein O.I. C.G. H.G.
19.6 99.1 18.8 Os09g0491100 AY056828.1 - Beta-primeverosidase (EC 3.2.1.149) 9e-1 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) O.I. C.G. H.G.
19.4 99.0 2.9 Os10g0452100 AK063328.1 - Glycine-rich protein (Fragment) 4e-4 At1g75550 glycine-rich protein O.I. C.G. H.G.
19.1 99.0 0.3 Os06g0562200 AK107448.1 - Bet v I allergen family protein 5e-4 At2g38310 unknown protein O.I. C.G. H.G.
19.1 99.0 0.1 Os02g0158500 9630.m00568 - Uncharacterized plant-specific domain 01627containing protein 6e-4 At5g67210 unknown protein O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	Ev	AGI code	Arabidopsis gene name	O.I.	C.G.	H.G.
67.5	99.9	28.3	Os05g0399400	L37289.1	-	Chitinase (EC 3.2.1.14)	4e-2	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	C.G.	H.G.
38.9	99.8	5.1	Os05g0515500	AK068905.1	-	O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT)	7e-1	At1g53625	unknown protein	O.I.	C.G.	H.G.
38.8	99.8	47.1	Os05g0226900	AF337054.1	-	Conserved hypothetical protein	3e-3	At2g43970	La domain-containing protein	O.I.	C.G.	H.G.
35.5	99.8	23.5	Os06g0302000	AK106070.1	-	Hypothetical protein	3e+0	At1g06475	unknown protein	O.I.	C.G.	H.G.
30.7	99.7	5.4	Os07g0643800	AK103858.1	-	Plant disease resistance response protein familyprotein	1e-1	At1g01730	unknown protein	O.I.	C.G.	H.G.
27.4	99.6	3.7	Os09g0422500	AK121170.1	-	Cellulose synthase	3e-33	At5g17420	IRX3 (IRREGULAR XYLEM 3)	O.I.	C.G.	H.G.
27.3	99.6	37.1	Os02g0651900	AK102949.1	-	Conserved hypothetical protein	5e-1	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	C.G.	H.G.
26.9	99.6	18.6	Os03g0273200	AK072397.1	-	Laccase (EC 1.10.3.2)	7e-5	At2g38080	IRX12 (IRREGULAR XYLEM 12)	O.I.	C.G.	H.G.
26.1	99.5	8.0	Os03g0637600	AK105732.1	-	Extensin protein-like	2e-1	At3g24480	leucine-rich repeat family protein / extensin family protein	O.I.	C.G.	H.G.
24.1	99.4	202.4	Os04g0521100	9632.m04226	-	Plasma membrane intrinsic protein (Aquaporin)	1e-42	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	C.G.	H.G.
24.1	99.4	2.2	Os07g0640300	9639.m04076	-	Nucleic acid-binding OB-fold domain containingprotein	6e-1	At4g10780	disease resistance protein (CC-NBS-LRR class), putative	O.I.	C.G.	H.G.
22.0	99.3	1.5	Os04g0512300	AK071791.1	-	Conserved hypothetical protein	8e-1	At1g09157	unknown protein	O.I.	C.G.	H.G.
21.2	99.2	20.9	Os06g0106800	AK122178.1	-	Conserved hypothetical protein	2e-1	At3g61490	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	C.G.	H.G.
20.8	99.2	0.5	Os03g0294100	9631.m01800	-	Conserved hypothetical protein	2e-1	At1g07120	-	O.I.	C.G.	H.G.
20.7	99.2	26.8	Os10g0569600	BQ529575	-	RIR1b protein precursor	1e+0	At2g25344	LCR14 (Low-molecular-weight cysteine-rich 14)	O.I.	C.G.	H.G.
20.5	99.1	13.4	Os07g0418700	AK105945.1	-	Conserved hypothetical protein	2e+0	At5g22950	VPS24.1	O.I.	C.G.	H.G.
20.0	99.1	42.1	Os11g0306400	AK106179.1	-	O-methyltransferase, family 2 domain containingprotein	2e-1	At3g16190	isochorismatase hydrolase family protein	O.I.	C.G.	H.G.
19.8	99.1	0.3	Os09g0316000	9637.m01182	-	Conserved hypothetical protein	2e+0	At3g58670	unknown protein	O.I.	C.G.	H.G.
19.6	99.1	18.8	Os09g0491100	AY056828.1	-	Beta-primeverosidase (EC 3.2.1.149)	9e-1	At3g60120	BGLU27 (BETA GLUCOSIDASE 27)	O.I.	C.G.	H.G.
19.4	99.0	2.9	Os10g0452100	AK063328.1	-	Glycine-rich protein (Fragment)	4e-4	At1g75550	glycine-rich protein	O.I.	C.G.	H.G.
19.1	99.0	0.3	Os06g0562200	AK107448.1	-	Bet v I allergen family protein	5e-4	At2g38310	unknown protein	O.I.	C.G.	H.G.
19.1	99.0	0.1	Os02g0158500	9630.m00568	-	Uncharacterized plant-specific domain 01627containing protein	6e-4	At5g67210	unknown protein	O.I.	C.G.	H.G.

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GSM ID	GSM262000
Assay name	IAC165, 2 days after infection with S. hermonthica, biological replicate #1
GSE experiment	GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

Microarray experiments to specifically-expressed genes

GSM ID GSM262000 Assay name IAC165, 2 days after infection with S. hermonthica, biological replicate #1 GSE experiment GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

GSM ID GSM262000

Assay name IAC165, 2 days after infection with S. hermonthica, biological replicate #1

GSE experiment GSE10373: Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica