CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM260958

Assay name A6-LLOYD-CON_REP3

GSE experiment GSE10326: Transcriptome analysis of pho3

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
31.5 99.7 80.9 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
29.1 99.7 65.6 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
29.1 99.7 25.5 At4g38850 830040 SAUR15 (SMALL AUXIN UPREGULATED 15) mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants. O.I. C.G. H.G.
26.0 99.7 62.2 At5g03230 831900 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
24.6 99.6 22.1 At5g35480 833512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.3 99.6 13.5 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
23.5 99.6 18.1 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
23.2 99.6 18.0 At3g46880 823841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
22.5 99.6 43.5 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
21.5 99.6 10.4 At1g52810 841714 2-oxoglutarate-dependent dioxygenase-related F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
18.3 99.5 85.4 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
18.2 99.5 55.3 At5g59080 836025 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P O.I. C.G. H.G.
17.3 99.5 31.1 At3g56080 824774 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
17.2 99.5 64.4 At1g20070 838596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
16.9 99.5 128.9 At3g58990 825068 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM O.I. C.G. H.G.
16.2 99.5 64.3 At4g00880 827989 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
16.2 99.5 39.5 At3g48720 824033 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
16.1 99.5 84.3 At2g15560 816049 - F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO O.I. C.G. H.G.
14.2 99.4 96.6 At2g20570 816579 GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1) Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus. O.I. C.G. H.G.
13.8 99.4 47.3 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter O.I. C.G. H.G.
13.7 99.4 55.7 At1g06830 837195 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB O.I. C.G. H.G.
13.7 99.4 41.7 At2g01870 814718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
13.7 99.4 25.7 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA O.I. C.G. H.G.
13.5 99.4 27.3 At5g23870 832452 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOB O.I. C.G. H.G.
13.3 99.4 175.2 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
13.3 99.4 53.0 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
13.2 99.4 63.3 At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB O.I. C.G. H.G.
13.2 99.4 31.5 At3g19850 821522 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P O.I. C.G. H.G.
13.1 99.4 157.8 At5g57345 835840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
13.0 99.4 30.7 At5g39860 833982 PRE1 (PACLOBUTRAZOL RESISTANCE1) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
12.9 99.3 102.6 At2g43100 818912 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM O.I. C.G. H.G.
12.7 99.3 131.2 At2g40610 818656 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
12.6 99.3 33.5 At3g15780 820821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.4 99.3 42.9 At1g29430 839819 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
12.3 99.3 14.0 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
12.1 99.3 54.6 At5g28020 832872 CYSD2 (CYSTEINE SYNTHASE D2) Encodes cysteine synthase CysD2. O.I. C.G. H.G.
12.1 99.3 44.1 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
12.1 99.3 31.6 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
12.0 99.3 73.7 At1g18590 838440 SOT17 (SULFOTRANSFERASE 17) encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates. O.I. C.G. H.G.
12.0 99.3 50.2 At4g38860 830041 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
12.0 99.3 37.0 At4g02630 828217 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
11.9 99.3 64.1 At4g09760 826564 choline kinase, putative encodes a choline synthase whose gene expression is induced by high salt and mannitol. O.I. C.G. H.G.
11.8 99.3 57.7 At5g45820 834622 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain. O.I. C.G. H.G.
11.8 99.3 37.5 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
11.7 99.3 43.1 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. C.G. H.G.
11.7 99.3 24.3 At2g45660 819174 AGL20 (AGAMOUS-LIKE 20) Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. O.I. C.G. H.G.
11.6 99.3 60.1 At2g29310 817480 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
11.2 99.2 141.7 At1g75460 843882 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF O.I. C.G. H.G.
11.2 99.2 119.1 At3g02020 821287 AK3 (ASPARTATE KINASE 3) encodes a monofunctional aspartate kinase O.I. C.G. H.G.
11.2 99.2 15.9 At4g39770 830135 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA O.I. C.G. H.G.
11.1 99.2 197.5 At4g37800 829936 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO O.I. C.G. H.G.
11.1 99.2 11.1 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
11.1 99.2 6.2 At5g65610 836687 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.8 99.2 112.4 At4g38840 830039 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO O.I. C.G. H.G.
10.7 99.2 67.6 At2g21185 816654 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
10.5 99.2 61.3 At4g16490 827347 binding F:binding;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
10.5 99.2 54.3 At1g31230 840011 AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. O.I. C.G. H.G.
10.4 99.2 79.3 At5g02760 831234 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV O.I. C.G. H.G.
10.4 99.2 14.6 At1g77990 844134 AST56 cDNA encoding a sulfate transporter. O.I. C.G. H.G.
10.4 99.2 13.9 At1g33340 840228 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;POFM O.I. C.G. H.G.
10.3 99.2 20.5 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM O.I. C.G. H.G.
10.2 99.2 128.9 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
10.2 99.2 100.8 At5g27280 832786 zinc finger (DNL type) family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO O.I. C.G. H.G.
10.2 99.2 98.8 At2g46100 819218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
10.2 99.2 20.0 At2g24220 816956 ATPUP5 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
10.1 99.2 37.9 At4g31820 829311 ENP (ENHANCER OF PINOID) A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development. O.I. C.G. H.G.
9.9 99.1 168.8 At5g64840 836607 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) member of GCN subfamily O.I. C.G. H.G.
9.8 99.1 129.4 At4g39940 830153 AKN2 (APS-kinase 2) adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete O.I. C.G. H.G.
9.7 99.1 14.6 At5g03050 831689 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.6 99.1 111.8 At1g65230 842830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB O.I. C.G. H.G.
9.6 99.1 45.1 At2g32530 817814 ATCSLB03 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
9.6 99.1 32.1 At3g05030 819665 NHX2 (SODIUM HYDROGEN EXCHANGER 2) member of Sodium proton exchanger family O.I. C.G. H.G.
9.5 99.1 46.3 At1g32540 840148 LOL1 (LSD ONE LIKE 1) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. O.I. C.G. H.G.
9.5 99.1 19.0 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
9.5 99.1 10.6 At5g53030 835382 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.4 99.1 97.7 At1g72030 843534 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO O.I. C.G. H.G.
9.4 99.1 60.6 At2g01590 814688 CRR3 (CHLORORESPIRATORY REDUCTION 3) Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity. O.I. C.G. H.G.
9.4 99.1 47.5 At1g03310 839531 isoamylase, putative / starch debranching enzyme, putative Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. O.I. C.G. H.G.
9.4 99.1 47.4 At2g20725 816602 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA O.I. C.G. H.G.
9.4 99.1 11.8 At3g17640 821031 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA O.I. C.G. H.G.
9.3 99.1 40.7 At1g71480 843489 nuclear transport factor 2 (NTF2) family protein F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO O.I. C.G. H.G.
9.3 99.1 32.3 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. O.I. C.G. H.G.
9.2 99.1 125.4 At4g00780 828009 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
9.1 99.1 40.3 At5g03120 831807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
9.0 99.1 37.1 At2g32100 817770 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) F:unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
9.0 99.1 31.3 At4g27710 828885 CYP709B3 member of CYP709B O.I. C.G. H.G.
9.0 99.1 11.8 At3g48590 824019 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues. O.I. C.G. H.G.
9.0 99.1 8.4 At1g52800 841713 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
9.0 99.1 5.4 At4g26540 828760 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
8.9 99.0 91.9 At5g16400 831501 ATF2 Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma. O.I. C.G. H.G.
8.9 99.0 64.8 At4g12030 826811 bile acid:sodium symporter family protein F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA O.I. C.G. H.G.
8.9 99.0 20.6 At1g29440 839820 - F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
8.8 99.0 129.4 At5g57040 835808 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:chloroplast;BPOM O.I. C.G. H.G.
8.8 99.0 81.4 At2g21210 816658 auxin-responsive protein, putative Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers. O.I. C.G. H.G.
8.8 99.0 38.6 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.
8.8 99.0 24.7 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. O.I. C.G. H.G.
8.7 99.0 135.6 At5g18600 831978 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
8.7 99.0 87.2 At2g27290 817272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPO O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
31.5	99.7	80.9	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
29.1	99.7	65.6	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
29.1	99.7	25.5	At4g38850	830040	SAUR15 (SMALL AUXIN UPREGULATED 15)	mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants.	O.I.	C.G.	H.G.
26.0	99.7	62.2	At5g03230	831900	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
24.6	99.6	22.1	At5g35480	833512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.3	99.6	13.5	At1g77960	844131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
23.5	99.6	18.1	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
23.2	99.6	18.0	At3g46880	823841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
22.5	99.6	43.5	At1g65860	842897	FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
21.5	99.6	10.4	At1g52810	841714	2-oxoglutarate-dependent dioxygenase-related	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
18.3	99.5	85.4	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
18.2	99.5	55.3	At5g59080	836025	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P	O.I.	C.G.	H.G.
17.3	99.5	31.1	At3g56080	824774	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
17.2	99.5	64.4	At1g20070	838596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
16.9	99.5	128.9	At3g58990	825068	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM	O.I.	C.G.	H.G.
16.2	99.5	64.3	At4g00880	827989	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
16.2	99.5	39.5	At3g48720	824033	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
16.1	99.5	84.3	At2g15560	816049	-	F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO	O.I.	C.G.	H.G.
14.2	99.4	96.6	At2g20570	816579	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	O.I.	C.G.	H.G.
13.8	99.4	47.3	At4g10770	826672	OPT7 (OLIGOPEPTIDE TRANSPORTER 7)	oligopeptide transporter	O.I.	C.G.	H.G.
13.7	99.4	55.7	At1g06830	837195	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
13.7	99.4	41.7	At2g01870	814718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
13.7	99.4	25.7	At1g31820	840072	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA	O.I.	C.G.	H.G.
13.5	99.4	27.3	At5g23870	832452	pectinacetylesterase family protein	F:carboxylesterase activity;P:biological_process unknown;C:plant-type cell wall;PMOB	O.I.	C.G.	H.G.
13.3	99.4	175.2	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
13.3	99.4	53.0	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
13.2	99.4	63.3	At5g12050	831078	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB	O.I.	C.G.	H.G.
13.2	99.4	31.5	At3g19850	821522	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
13.1	99.4	157.8	At5g57345	835840	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
13.0	99.4	30.7	At5g39860	833982	PRE1 (PACLOBUTRAZOL RESISTANCE1)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
12.9	99.3	102.6	At2g43100	818912	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM	O.I.	C.G.	H.G.
12.7	99.3	131.2	At2g40610	818656	ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
12.6	99.3	33.5	At3g15780	820821	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.4	99.3	42.9	At1g29430	839819	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
12.3	99.3	14.0	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
12.1	99.3	54.6	At5g28020	832872	CYSD2 (CYSTEINE SYNTHASE D2)	Encodes cysteine synthase CysD2.	O.I.	C.G.	H.G.
12.1	99.3	44.1	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
12.1	99.3	31.6	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
12.0	99.3	73.7	At1g18590	838440	SOT17 (SULFOTRANSFERASE 17)	encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with preference with methionine-derived desulfoglucosinolates.	O.I.	C.G.	H.G.
12.0	99.3	50.2	At4g38860	830041	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
12.0	99.3	37.0	At4g02630	828217	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
11.9	99.3	64.1	At4g09760	826564	choline kinase, putative	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	O.I.	C.G.	H.G.
11.8	99.3	57.7	At5g45820	834622	CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	O.I.	C.G.	H.G.
11.8	99.3	37.5	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
11.7	99.3	43.1	At4g23290	828428	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA	O.I.	C.G.	H.G.
11.7	99.3	24.3	At2g45660	819174	AGL20 (AGAMOUS-LIKE 20)	Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.	O.I.	C.G.	H.G.
11.6	99.3	60.1	At2g29310	817480	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
11.2	99.2	141.7	At1g75460	843882	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	O.I.	C.G.	H.G.
11.2	99.2	119.1	At3g02020	821287	AK3 (ASPARTATE KINASE 3)	encodes a monofunctional aspartate kinase	O.I.	C.G.	H.G.
11.2	99.2	15.9	At4g39770	830135	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA	O.I.	C.G.	H.G.
11.1	99.2	197.5	At4g37800	829936	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBO	O.I.	C.G.	H.G.
11.1	99.2	11.1	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
11.1	99.2	6.2	At5g65610	836687	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.8	99.2	112.4	At4g38840	830039	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus, response to cold;C:plasma membrane;PO	O.I.	C.G.	H.G.
10.7	99.2	67.6	At2g21185	816654	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
10.5	99.2	61.3	At4g16490	827347	binding	F:binding;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
10.5	99.2	54.3	At1g31230	840011	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)	Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.	O.I.	C.G.	H.G.
10.4	99.2	79.3	At5g02760	831234	protein phosphatase 2C family protein / PP2C family protein	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV	O.I.	C.G.	H.G.
10.4	99.2	14.6	At1g77990	844134	AST56	cDNA encoding a sulfate transporter.	O.I.	C.G.	H.G.
10.4	99.2	13.9	At1g33340	840228	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;POFM	O.I.	C.G.	H.G.
10.3	99.2	20.5	At3g28080	822432	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
10.2	99.2	128.9	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
10.2	99.2	100.8	At5g27280	832786	zinc finger (DNL type) family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO	O.I.	C.G.	H.G.
10.2	99.2	98.8	At2g46100	819218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
10.2	99.2	20.0	At2g24220	816956	ATPUP5	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
10.1	99.2	37.9	At4g31820	829311	ENP (ENHANCER OF PINOID)	A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development.	O.I.	C.G.	H.G.
9.9	99.1	168.8	At5g64840	836607	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	member of GCN subfamily	O.I.	C.G.	H.G.
9.8	99.1	129.4	At4g39940	830153	AKN2 (APS-kinase 2)	adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete	O.I.	C.G.	H.G.
9.7	99.1	14.6	At5g03050	831689	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.6	99.1	111.8	At1g65230	842830	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	O.I.	C.G.	H.G.
9.6	99.1	45.1	At2g32530	817814	ATCSLB03	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
9.6	99.1	32.1	At3g05030	819665	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	member of Sodium proton exchanger family	O.I.	C.G.	H.G.
9.5	99.1	46.3	At1g32540	840148	LOL1 (LSD ONE LIKE 1)	Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death.	O.I.	C.G.	H.G.
9.5	99.1	19.0	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
9.5	99.1	10.6	At5g53030	835382	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.4	99.1	97.7	At1g72030	843534	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO	O.I.	C.G.	H.G.
9.4	99.1	60.6	At2g01590	814688	CRR3 (CHLORORESPIRATORY REDUCTION 3)	Likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located in the membrane fraction of chloroplast. Mutant has impaired NAD(P)H dehydrogenase activity.	O.I.	C.G.	H.G.
9.4	99.1	47.5	At1g03310	839531	isoamylase, putative / starch debranching enzyme, putative	Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex.	O.I.	C.G.	H.G.
9.4	99.1	47.4	At2g20725	816602	CAAX amino terminal protease family protein	F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA	O.I.	C.G.	H.G.
9.4	99.1	11.8	At3g17640	821031	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:unknown;PMOBFA	O.I.	C.G.	H.G.
9.3	99.1	40.7	At1g71480	843489	nuclear transport factor 2 (NTF2) family protein	F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO	O.I.	C.G.	H.G.
9.3	99.1	32.3	At5g54250	835513	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	O.I.	C.G.	H.G.
9.2	99.1	125.4	At4g00780	828009	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
9.1	99.1	40.3	At5g03120	831807	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
9.0	99.1	37.1	At2g32100	817770	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
9.0	99.1	31.3	At4g27710	828885	CYP709B3	member of CYP709B	O.I.	C.G.	H.G.
9.0	99.1	11.8	At3g48590	824019	NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)	Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5A) and expressed in vegetative and reproductive tissues.	O.I.	C.G.	H.G.
9.0	99.1	8.4	At1g52800	841713	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
9.0	99.1	5.4	At4g26540	828760	kinase	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
8.9	99.0	91.9	At5g16400	831501	ATF2	Encodes an f-type thioredoxin (Trx-f2) localized in chloroplast stroma.	O.I.	C.G.	H.G.
8.9	99.0	64.8	At4g12030	826811	bile acid:sodium symporter family protein	F:transporter activity, bile acid:sodium symporter activity;P:sodium ion transport;C:membrane;OBMPA	O.I.	C.G.	H.G.
8.9	99.0	20.6	At1g29440	839820	-	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
8.8	99.0	129.4	At5g57040	835808	lactoylglutathione lyase family protein / glyoxalase I family protein	F:catalytic activity;P:metabolic process;C:chloroplast;BPOM	O.I.	C.G.	H.G.
8.8	99.0	81.4	At2g21210	816658	auxin-responsive protein, putative	Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers.	O.I.	C.G.	H.G.
8.8	99.0	38.6	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.
8.8	99.0	24.7	At3g63110	825486	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	O.I.	C.G.	H.G.
8.7	99.0	135.6	At5g18600	831978	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
8.7	99.0	87.2	At2g27290	817272	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPO	O.I.	C.G.	H.G.

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GSM ID	GSM260958
Assay name	A6-LLOYD-CON_REP3
GSE experiment	GSE10326: Transcriptome analysis of pho3

Microarray experiments to specifically-expressed genes

GSM ID GSM260958 Assay name A6-LLOYD-CON_REP3 GSE experiment GSE10326: Transcriptome analysis of pho3

GSM ID GSM260958

Assay name A6-LLOYD-CON_REP3

GSE experiment GSE10326: Transcriptome analysis of pho3