CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM260957

Assay name A5-LLOYD-CON_REP2

GSE experiment GSE10326: Transcriptome analysis of pho3

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
46.9 99.8 15.4 At1g52810 841714 2-oxoglutarate-dependent dioxygenase-related F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
29.9 99.7 20.5 At3g46880 823841 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
27.3 99.7 36.2 At1g31820 840072 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA O.I. C.G. H.G.
25.6 99.7 64.5 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter O.I. C.G. H.G.
24.0 99.6 116.1 At3g47420 823896 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP O.I. C.G. H.G.
23.5 99.6 13.3 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
23.1 99.6 59.6 At2g32100 817770 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) F:unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
22.7 99.6 69.1 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
21.8 99.6 72.5 At1g20070 838596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
21.4 99.6 164.4 At5g04950 830377 NAS1 (NICOTIANAMINE SYNTHASE 1) Encodes a nicotianamide synthase. O.I. C.G. H.G.
21.3 99.6 67.2 At2g32530 817814 ATCSLB03 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
20.8 99.6 12.0 At2g47670 819380 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.5 99.6 217.7 At4g19170 827655 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase O.I. C.G. H.G.
20.3 99.6 83.2 At3g51895 824353 SULTR3 Encodes a sulfate transporter. O.I. C.G. H.G.
20.2 99.6 26.0 At4g02075 828146 PIT1 (pitchoun 1) F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MPOFV O.I. C.G. H.G.
19.7 99.6 88.8 At1g50290 841451 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P O.I. C.G. H.G.
19.4 99.6 12.4 At1g52800 841713 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
19.3 99.6 53.5 At5g35490 833513 unknown protein Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine. O.I. C.G. H.G.
19.1 99.6 68.4 At5g28020 832872 CYSD2 (CYSTEINE SYNTHASE D2) Encodes cysteine synthase CysD2. O.I. C.G. H.G.
18.9 99.5 53.1 At5g03230 831900 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
17.7 99.5 8.5 At3g10150 820178 PAP16 (PURPLE ACID PHOSPHATASE 16) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:membrane;FBPO O.I. C.G. H.G.
17.1 99.5 61.9 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase O.I. C.G. H.G.
17.1 99.5 18.7 At1g77990 844134 AST56 cDNA encoding a sulfate transporter. O.I. C.G. H.G.
16.8 99.5 25.3 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
16.1 99.5 26.0 At2g38640 818446 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
16.1 99.5 15.0 At4g03500 827731 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOFPBVA O.I. C.G. H.G.
15.9 99.5 127.2 At1g72030 843534 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO O.I. C.G. H.G.
15.9 99.5 50.5 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
15.7 99.5 51.4 At5g59080 836025 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P O.I. C.G. H.G.
15.7 99.5 25.4 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM O.I. C.G. H.G.
15.6 99.5 29.6 At5g52900 835367 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
15.2 99.4 82.1 At2g15560 816049 - F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO O.I. C.G. H.G.
14.9 99.4 110.0 At4g19420 827683 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBA O.I. C.G. H.G.
14.7 99.4 28.7 At3g56080 824774 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
14.6 99.4 35.0 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates O.I. C.G. H.G.
14.3 99.4 37.2 At1g76130 843945 AMY2 (ALPHA-AMYLASE-LIKE 2) alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis. O.I. C.G. H.G.
14.3 99.4 15.1 At2g39250 818510 SNZ (SCHNARCHZAPFEN) Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. O.I. C.G. H.G.
14.1 99.4 69.8 At4g09760 826564 choline kinase, putative encodes a choline synthase whose gene expression is induced by high salt and mannitol. O.I. C.G. H.G.
13.5 99.4 17.9 At1g05690 837076 BT3 (BTB AND TAZ DOMAIN PROTEIN 3) BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development. O.I. C.G. H.G.
13.4 99.4 166.3 At3g21670 821721 nitrate transporter (NTP3) F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
13.3 99.4 52.5 At1g02300 839576 cathepsin B-like cysteine protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
13.3 99.4 38.6 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. O.I. C.G. H.G.
13.1 99.4 91.0 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP O.I. C.G. H.G.
13.0 99.4 57.7 At4g00880 827989 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO O.I. C.G. H.G.
13.0 99.4 30.0 At3g63110 825486 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast. O.I. C.G. H.G.
12.9 99.3 48.1 At1g71480 843489 nuclear transport factor 2 (NTF2) family protein F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO O.I. C.G. H.G.
12.8 99.3 32.6 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
12.6 99.3 53.1 At1g56430 842096 NAS4 (NICOTIANAMINE SYNTHASE 4) F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO O.I. C.G. H.G.
12.6 99.3 38.8 At2g32870 817848 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
12.5 99.3 143.2 At4g22570 828353 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1. O.I. C.G. H.G.
12.5 99.3 33.3 At3g15780 820821 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.4 99.3 17.5 At1g51440 841569 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMV O.I. C.G. H.G.
12.3 99.3 44.1 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. C.G. H.G.
12.1 99.3 65.8 At4g16490 827347 binding F:binding;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
12.0 99.3 58.1 At5g45820 834622 CIPK20 (CBL-INTERACTING PROTEIN KINASE 20) Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain. O.I. C.G. H.G.
12.0 99.3 43.7 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
11.9 99.3 40.5 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
11.8 99.3 70.1 At1g04350 839542 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
11.7 99.3 171.0 At5g09220 830781 AAP2 (AMINO ACID PERMEASE 2) member of AAAP family O.I. C.G. H.G.
11.7 99.3 85.1 At1g68830 843215 STN7 (Stt7 homolog STN7) STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation O.I. C.G. H.G.
11.7 99.3 21.7 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
11.6 99.3 98.6 At5g63800 836500 MUM2 (MUCILAGE-MODIFIED 2) Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35 O.I. C.G. H.G.
11.6 99.3 87.2 At2g20570 816579 GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1) Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus. O.I. C.G. H.G.
11.6 99.3 36.4 At4g02630 828217 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
11.5 99.3 147.5 At5g57345 835840 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO O.I. C.G. H.G.
11.5 99.3 69.8 At3g11670 820339 DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1) Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE). O.I. C.G. H.G.
11.5 99.3 33.3 At3g48720 824033 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
11.5 99.3 17.1 At5g28030 832873 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA O.I. C.G. H.G.
11.4 99.3 12.6 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
11.3 99.3 33.2 At1g32520 840146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO O.I. C.G. H.G.
11.2 99.2 21.4 At3g12520 820431 SULTR4 Encodes a sulfate transporter that in induced under sulfate limitation. O.I. C.G. H.G.
11.2 99.2 14.9 At5g35480 833512 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
11.2 99.2 10.5 At3g28100 822434 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;BPOAMF O.I. C.G. H.G.
11.1 99.2 11.1 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
11.0 99.2 81.4 At3g12320 820411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
11.0 99.2 16.2 At2g40435 818637 - F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
10.9 99.2 47.4 At1g29700 839847 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF O.I. C.G. H.G.
10.9 99.2 6.3 At3g16540 820902 DegP11 (DegP protease 11) Encodes a putative DegP protease. O.I. C.G. H.G.
10.7 99.2 175.1 At5g64840 836607 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) member of GCN subfamily O.I. C.G. H.G.
10.7 99.2 116.0 At3g02020 821287 AK3 (ASPARTATE KINASE 3) encodes a monofunctional aspartate kinase O.I. C.G. H.G.
10.7 99.2 63.3 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
10.7 99.2 25.0 At4g18210 827546 ATPUP10 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. O.I. C.G. H.G.
10.7 99.2 15.5 At4g39770 830135 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA O.I. C.G. H.G.
10.6 99.2 102.0 At3g58990 825068 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM O.I. C.G. H.G.
10.6 99.2 12.6 At3g17640 821031 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA O.I. C.G. H.G.
10.5 99.2 211.4 At1g73600 843694 methyltransferase/ phosphoethanolamine N-methyltransferase F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV O.I. C.G. H.G.
10.5 99.2 126.9 At2g29650 817515 PHT4 Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane. O.I. C.G. H.G.
10.4 99.2 136.6 At1g75460 843882 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF O.I. C.G. H.G.
10.4 99.2 81.3 At5g13770 831222 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB O.I. C.G. H.G.
10.4 99.2 54.0 At1g31230 840011 AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. O.I. C.G. H.G.
10.3 99.2 39.1 At1g59700 842261 ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
10.3 99.2 10.4 At2g46660 819278 CYP78A6 member of CYP78A O.I. C.G. H.G.
10.3 99.2 8.2 At1g05550 837057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.2 99.2 58.4 At1g07010 837211 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV O.I. C.G. H.G.
10.0 99.2 33.9 At5g62430 836364 CDF1 (CYCLING DOF FACTOR 1) Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon. O.I. C.G. H.G.
10.0 99.2 21.7 At3g50750 824239 brassinosteroid signalling positive regulator-related F:transcription regulator activity;P:biological_process unknown;C:vacuole;OPFMB O.I. C.G. H.G.
9.8 99.1 113.1 At1g65230 842830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB O.I. C.G. H.G.
9.8 99.1 32.5 At3g05030 819665 NHX2 (SODIUM HYDROGEN EXCHANGER 2) member of Sodium proton exchanger family O.I. C.G. H.G.
9.7 99.1 89.0 At2g43100 818912 aconitase C-terminal domain-containing protein F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM O.I. C.G. H.G.
9.7 99.1 73.5 At2g42750 818875 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
46.9	99.8	15.4	At1g52810	841714	2-oxoglutarate-dependent dioxygenase-related	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
29.9	99.7	20.5	At3g46880	823841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
27.3	99.7	36.2	At1g31820	840072	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPA	O.I.	C.G.	H.G.
25.6	99.7	64.5	At4g10770	826672	OPT7 (OLIGOPEPTIDE TRANSPORTER 7)	oligopeptide transporter	O.I.	C.G.	H.G.
24.0	99.6	116.1	At3g47420	823896	glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative	F:sugar:hydrogen symporter activity;P:carbohydrate transport;C:unknown;BFOMAP	O.I.	C.G.	H.G.
23.5	99.6	13.3	At1g77960	844131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
23.1	99.6	59.6	At2g32100	817770	OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16)	F:unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
22.7	99.6	69.1	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
21.8	99.6	72.5	At1g20070	838596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
21.4	99.6	164.4	At5g04950	830377	NAS1 (NICOTIANAMINE SYNTHASE 1)	Encodes a nicotianamide synthase.	O.I.	C.G.	H.G.
21.3	99.6	67.2	At2g32530	817814	ATCSLB03	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
20.8	99.6	12.0	At2g47670	819380	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.5	99.6	217.7	At4g19170	827655	NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)	chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase	O.I.	C.G.	H.G.
20.3	99.6	83.2	At3g51895	824353	SULTR3	Encodes a sulfate transporter.	O.I.	C.G.	H.G.
20.2	99.6	26.0	At4g02075	828146	PIT1 (pitchoun 1)	F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MPOFV	O.I.	C.G.	H.G.
19.7	99.6	88.8	At1g50290	841451	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cytosol;P	O.I.	C.G.	H.G.
19.4	99.6	12.4	At1g52800	841713	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
19.3	99.6	53.5	At5g35490	833513	unknown protein	Encodes MRU1 (mto 1 responding up). Up-regulated in mto1-1 mutant that over-accumulates soluble methionine.	O.I.	C.G.	H.G.
19.1	99.6	68.4	At5g28020	832872	CYSD2 (CYSTEINE SYNTHASE D2)	Encodes cysteine synthase CysD2.	O.I.	C.G.	H.G.
18.9	99.5	53.1	At5g03230	831900	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
17.7	99.5	8.5	At3g10150	820178	PAP16 (PURPLE ACID PHOSPHATASE 16)	F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:membrane;FBPO	O.I.	C.G.	H.G.
17.1	99.5	61.9	At3g26280	822231	CYP71B4	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
17.1	99.5	18.7	At1g77990	844134	AST56	cDNA encoding a sulfate transporter.	O.I.	C.G.	H.G.
16.8	99.5	25.3	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
16.1	99.5	26.0	At2g38640	818446	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
16.1	99.5	15.0	At4g03500	827731	ankyrin repeat family protein	F:protein binding;P:unknown;C:unknown;MOFPBVA	O.I.	C.G.	H.G.
15.9	99.5	127.2	At1g72030	843534	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO	O.I.	C.G.	H.G.
15.9	99.5	50.5	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
15.7	99.5	51.4	At5g59080	836025	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:chloroplast;P	O.I.	C.G.	H.G.
15.7	99.5	25.4	At3g28080	822432	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
15.6	99.5	29.6	At5g52900	835367	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
15.2	99.4	82.1	At2g15560	816049	-	F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBO	O.I.	C.G.	H.G.
14.9	99.4	110.0	At4g19420	827683	pectinacetylesterase family protein	F:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBA	O.I.	C.G.	H.G.
14.7	99.4	28.7	At3g56080	824774	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
14.6	99.4	35.0	At1g65860	842897	FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1)	belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates	O.I.	C.G.	H.G.
14.3	99.4	37.2	At1g76130	843945	AMY2 (ALPHA-AMYLASE-LIKE 2)	alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.	O.I.	C.G.	H.G.
14.3	99.4	15.1	At2g39250	818510	SNZ (SCHNARCHZAPFEN)	Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.	O.I.	C.G.	H.G.
14.1	99.4	69.8	At4g09760	826564	choline kinase, putative	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	O.I.	C.G.	H.G.
13.5	99.4	17.9	At1g05690	837076	BT3 (BTB AND TAZ DOMAIN PROTEIN 3)	BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development.	O.I.	C.G.	H.G.
13.4	99.4	166.3	At3g21670	821721	nitrate transporter (NTP3)	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
13.3	99.4	52.5	At1g02300	839576	cathepsin B-like cysteine protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis, regulation of catalytic activity;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
13.3	99.4	38.6	At5g54250	835513	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	O.I.	C.G.	H.G.
13.1	99.4	91.0	At3g01060	821278	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP	O.I.	C.G.	H.G.
13.0	99.4	57.7	At4g00880	827989	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
13.0	99.4	30.0	At3g63110	825486	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.	O.I.	C.G.	H.G.
12.9	99.3	48.1	At1g71480	843489	nuclear transport factor 2 (NTF2) family protein	F:protein transporter activity;P:transport, protein import into nucleus;C:chloroplast thylakoid membrane, nucleus, intracellular, chloroplast;PBO	O.I.	C.G.	H.G.
12.8	99.3	32.6	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
12.6	99.3	53.1	At1g56430	842096	NAS4 (NICOTIANAMINE SYNTHASE 4)	F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABO	O.I.	C.G.	H.G.
12.6	99.3	38.8	At2g32870	817848	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
12.5	99.3	143.2	At4g22570	828353	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1.	O.I.	C.G.	H.G.
12.5	99.3	33.3	At3g15780	820821	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.4	99.3	17.5	At1g51440	841569	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;POFBMV	O.I.	C.G.	H.G.
12.3	99.3	44.1	At4g23290	828428	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA	O.I.	C.G.	H.G.
12.1	99.3	65.8	At4g16490	827347	binding	F:binding;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
12.0	99.3	58.1	At5g45820	834622	CIPK20 (CBL-INTERACTING PROTEIN KINASE 20)	Encodes a CBL-interacting serine/threonine protein kinase comprised of an N-terminal kinase catalytic domain similar to SNF1/AMPK and a unique C-terminal regulatory domain.	O.I.	C.G.	H.G.
12.0	99.3	43.7	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
11.9	99.3	40.5	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
11.8	99.3	70.1	At1g04350	839542	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
11.7	99.3	171.0	At5g09220	830781	AAP2 (AMINO ACID PERMEASE 2)	member of AAAP family	O.I.	C.G.	H.G.
11.7	99.3	85.1	At1g68830	843215	STN7 (Stt7 homolog STN7)	STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation	O.I.	C.G.	H.G.
11.7	99.3	21.7	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
11.6	99.3	98.6	At5g63800	836500	MUM2 (MUCILAGE-MODIFIED 2)	Involved in mucilage formation. Mutants form columella and outer cell wall architecture of the mucilage cells resembles wild-type. However, mum2 seeds completely lack seed coat mucilage. This mutation appears to represent a later step in the development of this cell-type. Encodes a beta-galactosidase involved in seed coat mucilage biosynthesis. Member of Glycoside Hydrolase Family 35	O.I.	C.G.	H.G.
11.6	99.3	87.2	At2g20570	816579	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.	O.I.	C.G.	H.G.
11.6	99.3	36.4	At4g02630	828217	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
11.5	99.3	147.5	At5g57345	835840	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	O.I.	C.G.	H.G.
11.5	99.3	69.8	At3g11670	820339	DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1)	Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).	O.I.	C.G.	H.G.
11.5	99.3	33.3	At3g48720	824033	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
11.5	99.3	17.1	At5g28030	832873	cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative	F:pyridoxal phosphate binding, cysteine synthase activity, catalytic activity;P:cysteine biosynthetic process from serine, cysteine biosynthetic process, metabolic process;C:unknown;BOFPMA	O.I.	C.G.	H.G.
11.4	99.3	12.6	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
11.3	99.3	33.2	At1g32520	840146	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPO	O.I.	C.G.	H.G.
11.2	99.2	21.4	At3g12520	820431	SULTR4	Encodes a sulfate transporter that in induced under sulfate limitation.	O.I.	C.G.	H.G.
11.2	99.2	14.9	At5g35480	833512	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
11.2	99.2	10.5	At3g28100	822434	nodulin MtN21 family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;BPOAMF	O.I.	C.G.	H.G.
11.1	99.2	11.1	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
11.0	99.2	81.4	At3g12320	820411	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
11.0	99.2	16.2	At2g40435	818637	-	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
10.9	99.2	47.4	At1g29700	839847	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF	O.I.	C.G.	H.G.
10.9	99.2	6.3	At3g16540	820902	DegP11 (DegP protease 11)	Encodes a putative DegP protease.	O.I.	C.G.	H.G.
10.7	99.2	175.1	At5g64840	836607	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	member of GCN subfamily	O.I.	C.G.	H.G.
10.7	99.2	116.0	At3g02020	821287	AK3 (ASPARTATE KINASE 3)	encodes a monofunctional aspartate kinase	O.I.	C.G.	H.G.
10.7	99.2	63.3	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
10.7	99.2	25.0	At4g18210	827546	ATPUP10	Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.	O.I.	C.G.	H.G.
10.7	99.2	15.5	At4g39770	830135	trehalose-6-phosphate phosphatase, putative	F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA	O.I.	C.G.	H.G.
10.6	99.2	102.0	At3g58990	825068	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOFAPM	O.I.	C.G.	H.G.
10.6	99.2	12.6	At3g17640	821031	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:unknown;PMOBFA	O.I.	C.G.	H.G.
10.5	99.2	211.4	At1g73600	843694	methyltransferase/ phosphoethanolamine N-methyltransferase	F:methyltransferase activity, phosphoethanolamine N-methyltransferase activity;P:metabolic process;C:unknown;BOFAPMV	O.I.	C.G.	H.G.
10.5	99.2	126.9	At2g29650	817515	PHT4	Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.	O.I.	C.G.	H.G.
10.4	99.2	136.6	At1g75460	843882	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	O.I.	C.G.	H.G.
10.4	99.2	81.3	At5g13770	831222	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMAB	O.I.	C.G.	H.G.
10.4	99.2	54.0	At1g31230	840011	AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I)	Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.	O.I.	C.G.	H.G.
10.3	99.2	39.1	At1g59700	842261	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
10.3	99.2	10.4	At2g46660	819278	CYP78A6	member of CYP78A	O.I.	C.G.	H.G.
10.3	99.2	8.2	At1g05550	837057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.2	99.2	58.4	At1g07010	837211	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:peroxisome;OBPFAV	O.I.	C.G.	H.G.
10.0	99.2	33.9	At5g62430	836364	CDF1 (CYCLING DOF FACTOR 1)	Dof-type zinc finger domain-containing protein, similar to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Represses expression of Constans (CO), a circadian regulator of flowering time. Interacts with LKP2 and FKF1. Expression oscillates under constant light conditions. Mainly expressed in the vasculature of cotyledons, leaves and hypocotyls, but also in stomata. Localized to the nucleus and acts as a repressor of CONSTANS through binding to the Dof binding sites in the CO promoter. Protein gets degraded by FKF1 in the afternoon.	O.I.	C.G.	H.G.
10.0	99.2	21.7	At3g50750	824239	brassinosteroid signalling positive regulator-related	F:transcription regulator activity;P:biological_process unknown;C:vacuole;OPFMB	O.I.	C.G.	H.G.
9.8	99.1	113.1	At1g65230	842830	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	O.I.	C.G.	H.G.
9.8	99.1	32.5	At3g05030	819665	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	member of Sodium proton exchanger family	O.I.	C.G.	H.G.
9.7	99.1	89.0	At2g43100	818912	aconitase C-terminal domain-containing protein	F:hydro-lyase activity, 3-isopropylmalate dehydratase activity;P:leucine biosynthetic process, metabolic process;C:3-isopropylmalate dehydratase complex, chloroplast;BOAFPM	O.I.	C.G.	H.G.
9.7	99.1	73.5	At2g42750	818875	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.

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GSM ID	GSM260957
Assay name	A5-LLOYD-CON_REP2
GSE experiment	GSE10326: Transcriptome analysis of pho3

Microarray experiments to specifically-expressed genes

GSM ID GSM260957 Assay name A5-LLOYD-CON_REP2 GSE experiment GSE10326: Transcriptome analysis of pho3

GSM ID GSM260957

Assay name A5-LLOYD-CON_REP2

GSE experiment GSE10326: Transcriptome analysis of pho3